BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477224
Length=1944
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80270.1 | Symbols: PPR596 | PENTATRICOPEPTIDE REPEAT 596 | ... 2896 0.0
AT1G15480.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 885 0.0
> AT1G80270.1 | Symbols: PPR596 | PENTATRICOPEPTIDE REPEAT 596
| chr1:30180988-30183507 FORWARD LENGTH=2071
Length=2071
Score = 2896 bits (1568), Expect = 0.0
Identities = 1844/1972 (94%), Gaps = 39/1972 (2%)
Strand=Plus/Plus
Query 1 ATGTTTGCTCTTTCCAAGGTTTTGCGGAGAACGCAGAGACTCCGACTGGGAGCTTGTTCT 60
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 105 ATGTTCGCTCTTTCCAAGGTTTTACGAAGAACGCAGAGACTCCGACTGGGAGCTTGTTCT 164
Query 61 GCTGTGTACTCAAAAGATATACAGTCAGGAGGAGAAAGGAGCTTTGTCTCTCTTGAATCC 120
||||||| |||||||||||||| | |||||||||||||| | || |||| |||
Sbjct 165 GCTGTGTTTTCAAAAGATATACAATTAGGAGGAGAAAGGA-----G---CT-TTGATTCC 215
Query 121 AATTCGATTGTTTCTAGTAAACGTGAAGCTGTGCCAAGATTTTACCAGATCTCCTCTTTG 180
|||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 216 AATTCGATTGCTTCTACTAAACGTGAAGCTGTGCCAAGATTTTACGAGATCTCCTCTTTG 275
Query 181 AGTAAACGTGCACTTTCCTCTAATGCTGGCACTAAAAGCGATCAAGAGGACGACGACCTC 240
||||| ||||| |||||||| | ||||||||||||||| ||||||||||| |||||||||
Sbjct 276 AGTAATCGTGCTCTTTCCTCCAGTGCTGGCACTAAAAGTGATCAAGAGGAAGACGACCTC 335
Query 241 GAAGACGGTTTCTCAGAACTGGGAA-GTTCAAAGTCTGCCCAAGATACTACAAGTAGTGA 299
|||||||||||||||||||| |||| |||||||||||| ||||| | | || ||||||||
Sbjct 336 GAAGACGGTTTCTCAGAACT-GGAAGGTTCAAAGTCTGGCCAAGGTTCAACTAGTAGTGA 394
Query 300 TGATGATGAGGGAAAGCTCTCCGCTGATGAAGAAGAAGAACTAGAACTAGACCTCATTG- 358
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 395 TGAAGATGAGGGAAAGCTCTCCGCTGATGAAGAAGAAGAAGAAGAACTAGACCTCATTGA 454
Query 359 -A-TGA---TAGTA-ATAGAACCGCTGAAAAGAAACCATCTGAGCTATTTAAGACCATTG 412
| || ||||| | | ||| | ||||||||||| |||||||||||||||||||||||
Sbjct 455 AACCGACGTTAGTAGA-AAAACAGTTGAAAAGAAACAATCTGAGCTATTTAAGACCATTG 513
Query 413 TCTCCGCACCAGGTCTGTCTATAGGTAGTGCACTTGATAAGTGGGTGGAAGAAGGAAATG 472
|||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 514 TCTCCGCACCCGGTCTGTCTATAGGTAGTGCTCTTGATAAATGGGTGGAAGAAGGAAATG 573
Query 473 AGATCACTCGAGTCGAGGTTGCTAAGGCAATGCTCCAGCTGCGCAGGCGTCGGATGTATG 532
||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 574 AGATCACTCGAGTTGAGATTGCTAAGGCAATGCTCCAGCTGCGCAGGCGTCGCATGTATG 633
Query 533 GAAGAGCGTTGCAGATGTCAGAATGGTTGGAAGCAAATAAGAAAATTGAAATGAATGAGA 592
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 634 GAAGAGCGTTACAGATGTCAGAATGGTTGGAAGCAAATAAGAAAATTGAAATGACTGAGA 693
Query 593 GAGATTATTCTTCTCGGTTAGATCTGACAGTTAAGATACGTGGCTTAGAAAATGGAGAAG 652
|||||||| |||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 694 GAGATTATGCTTCTCGGTTAGATCTGACAGTTAAGATTCGTGGTTTAGAAAAGGGAGAAG 753
Query 653 CTTATATGCAGAAGATCCCGAAATCTTTCAAAGGGGAAGTGATTTACCGTACCCTCTTGG 712
||| ||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||
Sbjct 754 CTTGTATGCAGAAGATCCCAAAATCTTTTAAAGGGGAAGTGCTTTACCGTACCCTCTTGG 813
Query 713 CGAACTGTGTGGCTGCTGGCAATGTGAAGAAATCCGAACTGGTGTTCAACAGAATGAAGG 772
|||| ||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 814 CGAATTGTGTTGCTGCTGGCAATGTGAAGAAATCCGAACTGGTGTTTAACAAAATGAAGG 873
Query 773 ACTTGGGATTCCCTCTCTCTGGATTTACTTGTGATCAGATGCTTCTCCTCTACAAGAGGA 832
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 874 ACTTGGGATTCCCTCTCTCTGGATTTACTTGTGATCAGATGCTTCTGCTCCACAAGAGGA 933
Query 833 TCGACAGGAAGAAAATTGCTGATGTGCTATTGCTCATGGAGAAAGAAAATGTCAAGCCAA 892
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 934 TCGACAGGAAGAAAATTGCTGATGTACTATTGCTCATGGAGAAAGAAAATATCAAGCCAA 993
Query 893 GTCTTCTCACTTACAAAATCCTGATTGATGTCAAAGGGGCAACAAATGACATAAGTGGGA 952
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 994 GTCTTCTCACTTACAAAATCCTGATTGATGTCAAAGGTGCAACAAATGACATAAGTGGTA 1053
Query 953 TGGAGCAAATTTTGGAGACAATGAAAGATGAAGGTGTTGAACCGGACTTCCAGACACAAG 1012
||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1054 TGGAGCAAATTCTGGAGACAATGAAAGATGAAGGTGTTGAACTGGACTTCCAGACGCAAG 1113
Query 1013 CTCTCACTGCTAGACACTATTCGGGAGCTGGGCTTAAAGAGAAAGCCGAGAAAGTCTTGA 1072
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1114 CTCTCACTGCTAGACACTATTCGGGAGCTGGCCTTAAAGATAAAGCCGAGAAAGTCTTGA 1173
Query 1073 AAGAGATGGAAGGTGAAAGCTTAGAGGCAAATCGCCGGGCGTTCAAAGATTTGCTCTCCA 1132
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1174 AAGAGATGGAAGGTGAAAGCTTAGAGGCAAATCGCCGGGCATTCAAAGATTTGCTCTCCA 1233
Query 1133 TCTATGCCTCTCTTGGGAGAGAAGATGAAGTGAAGAGAATATGGAAGATCTGTGAATCAA 1192
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1234 TCTATGCCTCTCTTGGGAGAGAAGATGAAGTGAAAAGAATATGGAAGATCTGTGAATCAA 1293
Query 1193 AGCCCTACTTTGAGGAATCCCTTGCTGCAATCCACGCTTTTGGAAAGCTCAATAAAGTGC 1252
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1294 AGCCCTACTTTGAGGAATCCCTTGCTGCAATCCAAGCTTTTGGAAAGCTCAATAAAGTGC 1353
Query 1253 AAGAAGCAGAGGCGATTTTTGAGAAGATTGTGAAGATGGGCAGAAGAGCTTCTTCTAATA 1312
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1354 AAGAAGCAGAGGCGATTTTTGAGAAGATTGTGAAGATGGACAGAAGAGCTTCTTCTAGTA 1413
Query 1313 CTTACTCCGTTCTCTTGAGGGTTTACGTAGATCACAAGATGCTCTCAAAGGGTAAGGATC 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 CTTACTCCGTTCTCTTGAGGGTTTACGTAGATCACAAGATGCTCTCAAAGGGTAAGGATC 1473
Query 1373 TCGTTAAACGAATGGCTGAGAGCGGTTGCAGGATCGAGGCAACGACATGGGATGCACTCA 1432
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1474 TGGTTAAACGAATGGCTGAGAGCGGTTGCAGGATCGAGGCAACGACATGGGATGCACTCA 1533
Query 1433 TCAAGCTCTATGTGGAAGCTGGGGAAGTTGAAAAGGCTGATTCTTTGCTGGACAAGGCAT 1492
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1534 TCAAGCTCTATGTGGAAGCTGGAGAAGTTGAAAAGGCTGATTCTTTGCTGGACAAGGCAT 1593
Query 1493 CAAAACAGAGCCATACAAAACTGATGATGAACTCCTTCATGTATATCATGGACGAATACT 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1594 CAAAACAGAGCCATACAAAACTGATGATGAACTCCTTCATGTATATCATGGACGAGTACT 1653
Query 1553 CAAAACGGGGAGATGTTCATAACACAGAGAAGGTATTCCTAAAAATGAGGGAAGTTGGGT 1612
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1654 CAAAACGGGGAGATGTTCATAACACAGAGAAGATATTCCTAAAAATGAGGGAAGCTGGGT 1713
Query 1613 ATACATCTCGGCTTAGGCAGTTCCAAGCTCTCCTGCAGGCTTACATAAACGCCAAAGCCC 1672
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| | |
Sbjct 1714 ATACATCTCGGCTTAGGCAGTTCCAAGCCCTCATGCAGGCTTACATAAACGCCAAATCTC 1773
Query 1673 CTGCATATGGAATGCGAGATAGAATGAAAGCCGATAATATATTTCCAAACAAATCCATGG 1732
||||||||||||||||||||||| |||| || |||||||| |||||||||||||||||||
Sbjct 1774 CTGCATATGGAATGCGAGATAGATTGAAGGCGGATAATATCTTTCCAAACAAATCCATGG 1833
Query 1733 CTGCACAGTTGGCTCAAGGTGATCCATTTAAGAAGACAGCTATCTCTGATATTCTGGATT 1792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1834 CTGCACAGTTGGCTCAAGGTGATCCATTTAAGAAGACAGCTATCTCTGATATTCTGGATT 1893
Query 1793 GAGTAGTCTCTCTCTCTTCACTTTTCTTATTTCTCCTTGCAAGAAGTATCTCATTTGTAG 1852
|||||||||||||| || |||||||||| | ||| ||||||||||||||||||||||| |
Sbjct 1894 GAGTAGTCTCTCTCCCTACACTTTTCTTCTATCTGCTTGCAAGAAGTATCTCATTTGTCG 1953
Query 1853 TCCTAACGTTTAGCTT-A-AGA--A---T------------C-TGCTTAGTTGCTGTGTT 1892
||||||||||||| || | ||| | | | |||||||||||||||||
Sbjct 1954 TCCTAACGTTTAGTTTGAGAGAGTAACGTTAAGTTTAAGAACCTGCTTAGTTGCTGTGTT 2013
Query 1893 TTAAATGTTTCTGTTGGGTTCTTTGGTGATCACACTTCAGAGACCTTCAAGT 1944
|| ||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 2014 TTTAATGTTTCTATTCGGTTCTTTGGTGATCACACTTCAGAGACCTTCAAGT 2065
> AT1G15480.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:5318011-5320594 FORWARD LENGTH=2081
Length=2081
Score = 885 bits (479), Expect = 0.0
Identities = 1137/1449 (78%), Gaps = 68/1449 (5%)
Strand=Plus/Plus
Query 382 AAGAAACCATCTGAGCTATTTAAGACCATTGTCTCCG-CACCAGGTCTGTCTATAGGTAG 440
|||| |||||| ||| | |||||| ||||||| || | | | |||||||||| |||| ||
Sbjct 497 AAGAGACCATCGGAGATGTTTAAGGCCATTGTTTCTGTCTC-AGGTCTGTCTGTAGGGAG 555
Query 441 TGCACTTGATAAGTGGGTGGAAGAAGGAAATGAGATCA-CTCG-AGTCGAGGTTGCTAAG 498
||| |||||||||||||| ||| ||||||| || | || | || | ||| ||| |||
Sbjct 556 TGCTCTTGATAAGTGGGTTGAACAAGGAAAGGATACCAAC-CGTAAA-GAGTTTGA-AAG 612
Query 499 -GCAATGCTCCAGCTGCGCAGGCGTCGGATGTATGGAAGAGCGTTGCAGATGTCAGAATG 557
|| ||||| || || || | |||||||||| ||| ||||| ||||||||| |||||||
Sbjct 613 TGCGATGCTACAACTCCGTAAACGTCGGATGTTTGGGAGAGCATTGCAGATGACAGAATG 672
Query 558 GTTGGAAGCAAATAAGAAAATTGAAATGAATGAGAGAGATTATTCTTCTCGG-TTAGATC 616
||| || | ||||||| | |||||||| | |||||||||||| ||| |||| || ||||
Sbjct 673 GTTAGACGAAAATAAGCAGTTTGAAATGGAGGAGAGAGATTATGCTTGTCGGCTT-GATC 731
Query 617 TGACAGTT--AAGATACGTGGCTTAGAA-AATGGAGAAGCTTATATGCAGAAGA-TCCCG 672
||| || ||| ||||||||| | | || |||||||||||||| || || | |||||
Sbjct 732 TGAT--TTCCAAGGTACGTGGCTG-GTACAAGGGAGAAGCTTATAT-CAAAACAATCCCG 787
Query 673 AAATCTTTCAAAGGGGAAGTGATTTACCGTACCCTCTTGGCGAA-CTGTGTGGCTGCTGG 731
||||||||| ||||||| || | ||||| |||||| ||||||| | |||||| || |
Sbjct 788 GAATCTTTCAGAGGGGAATTGGTCTACCGAACCCTCCTGGCGAATCA-TGTGGCAACTAG 846
Query 732 CAATGTGAAGAA-ATCCGAA-CTGGTGTTCAACAGAATGAAGGACTTGGGATTCCCTCTC 789
|||||||| ||| | | ||| | | | ||||||| ||||||||||||||||||||||||
Sbjct 847 CAATGTGA-GAACAGCTGAAGCAGTT-TTCAACAAAATGAAGGACTTGGGATTCCCTCTG 904
Query 790 TCTGGATTTACTTGTGATCAGATGCTTCTCCTCTACAAGAGGATCGACAGGAAGAAAATT 849
|| ||| || ||| ||||||||||| | || ||||| ||| |||||| |||||||||
Sbjct 905 TCAACATTCACCTGTAATCAGATGCTTATTCTTTACAAAAGGGTCGACAAGAAGAAAATA 964
Query 850 GCTGATGTGCTATTGCTCATGGAGAAAGAAAATGTCAAGCC-AAGTCTTCTCACTTACAA 908
|| |||||| ||||||| ||||||| |||||| | ||||| || |||| ||| |||||
Sbjct 965 GCCGATGTGTTATTGCTGTTGGAGAAGGAAAATCTGAAGCCGAA-TCTTAACACATACAA 1023
Query 909 AATCCTGATTGATGTCAAAGGGGCAACAAATGACATAAGTGGGATGGAGCAAATTTTGGA 968
||||||||||||| |||||| || |||||||||||| ||||||||| |||||| ||||
Sbjct 1024 AATCCTGATTGATACCAAAGGATCATCAAATGACATAACTGGGATGGAACAAATTGTGGA 1083
Query 969 GACAATGAAA-GATGAAGGTGTTGAACCGGAC-TTCCAGACACAAGCTCTCACTGCTAGA 1026
|||||||||| | |||||||||||| | ||| ||| | ||| |||||||| ||| |||
Sbjct 1084 GACAATGAAAAG-TGAAGGTGTTGAGCTTGACCTTCGTG-CACGAGCTCTCATTGCAAGA 1141
Query 1027 CACTATTCGGGAGCTGGGCTTAAAGAGAAAGCCGAGAAAGT-CTTGAAAGAGATGGAAGG 1085
|||||| | |||||||||||||||||| || |||||||| || |||||||||||||||
Sbjct 1142 CACTATGCATCAGCTGGGCTTAAAGAGAAGGCTGAGAAAGTGCT-GAAAGAGATGGAAGG 1200
Query 1086 TGAAAGCTTAGAGGCAAATCGCCGGGCGTTCAAAGATTTGCTCTCCATCTATGCCTCTCT 1145
||||||||| |||| |||||| | || ||| |||||||| ||| |||||| || |||
Sbjct 1201 TGAAAGCTTGGAGGAAAATCGGCATATGTGCAAGGATTTGCTTTCCGTCTATGGCTATCT 1260
Query 1146 TGGGAGAGAAGATGAAGTGAAG-AGAATATGGAAGATCTGTGAATCAAAGCCCTACTT-T 1203
||| || ||||||||| | ||| | ||||||||||||||| ||| ||| || |
Sbjct 1261 CCAGAGGGAGGATGAAGTGC-GCAGAGTTTGGAAGATCTGTGAAGAAAACCCCCG-TTAT 1318
Query 1204 GAGGAA-TCCCTTGCTGCAATCCACGCTTTTGGAAAGCTCAATAAAGTGCAA-GAAGCAG 1261
| || ||| ||||||||||| |||||||||||| || ||||||| ||| || ||||
Sbjct 1319 AACGAGGTCC-TTGCTGCAATCTTGGCTTTTGGAAAGATCGATAAAGT-CAAAGATGCAG 1376
Query 1262 AGGCGATTTTTGAGAAGATTGT-GAAGATGGGC-AGAAGAGCTTCTTCTAATACTTACTC 1319
||||| ||||||||||| | || ||||||| | | | ||| |||||||||| ||||||
Sbjct 1377 AGGCGGTTTTTGAGAAGGT-GTTGAAGATGTCCCATA-GAGTTTCTTCTAATGTTTACTC 1434
Query 1320 CGTTCTCTTGAGGGTTTACGTAGATCACAAGATGCTCTCAAAGGGTAAGGATCTCGTTAA 1379
||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| |||||
Sbjct 1435 CGTTCTCTTGAGGGTTTACGTGGATCACAAGATGGTCTCAGAGGGTAAGGATCTTGTTAA 1494
Query 1380 AC-GAATGGCTGAGAGCGGTTGCAGGATCGAGGCAACGACATGGGATGCACTCATCAAGC 1438
| || || | || ||||| |||| || | ||| |||||||||||| | |||||||
Sbjct 1495 GCAGA-TGTCAGACAGCGGGTGCAATATTGGGGCCTTAACATGGGATGCAGTGATCAAGC 1553
Query 1439 TCTATGTGGAAGCTGGGGAAGTTGAAAAGGCTGATTCTTTGCTG-GACAAGGCA-T-CAA 1495
||||||||||||| |||||||| ||||||||||| |||| ||| | ||||||| | ||
Sbjct 1554 TCTATGTGGAAGCCGGGGAAGTAGAAAAGGCTGAGTCTTCACTGAG-CAAGGCAATACAG 1612
Query 1496 AACAGAGCCATACAAAACTGATGATGAACTCCTTCATGTA-TATCATGGACGAATAC-TC 1553
| || || | |||| | |||||| |||||||||||| | | ||| |||| || |
Sbjct 1613 T-C-GAAACAGATTAAACCGTTGATGAGCTCCTTCATGTACT-TAATGCACGAGTATGTG 1669
Query 1554 AAAACGGGGAGATGTTCATAACACAGAGAAGGTATTCCTAAAA-ATGAGGGAAGTTGGGT 1612
| || |||| |||||||||||||||||||| | |||| | | |||| | ||| ||| |
Sbjct 1670 AGAA-GGGGTGATGTTCATAACACAGAGAAAATCTTCC-AGAGGATGAAGCAAGCTGGCT 1727
Query 1613 ATACA-TCTCGGCTTA-GG-CAGTTCCAAGCTCTCCTGCAGGCTTACATAAACGCCAAAG 1669
|| || ||||| ||| || | || |||| | || | || ||||| | || |||||||
Sbjct 1728 AT-CAATCTCG-CTTCTGGGC-GTACCAAACCCTTATCCAAGCTTATGTCAATGCCAAAG 1784
Query 1670 CCCCTGCATATGGAATGCGAG-ATAGAATGAAAGCCGATAATATATTTCCAAACAAATCC 1728
| || || ||||||||| || | ||||||||||| ||||| || || ||||| |||
Sbjct 1785 CTCCAGCTTATGGAATGA-AGGAAAGAATGAAAGCTGATAACATCTTCCCAAATAAAAG- 1842
Query 1729 ATG-GCTGCACAGTTGGCTCAAGGTGATCCATTTAAGAAGACAGCTATCTCTGATATTCT 1787
|| ||||| || | ||| ||| ||||| || |||||||| || |||| ||| | ||
Sbjct 1843 ATTAGCTGCTCAACTCGCTAAAGCCGATCCCTTCAAGAAGACCCCTCTCTCGGATCTCCT 1902
Query 1788 GGATTGAGT 1796
||||||||
Sbjct 1903 TGATTGAGT 1911
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96284645310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5