BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477231 Length=764 Score E Sequences producing significant alignments: (Bits) Value AT1G80230.1 | Symbols: | Rubredoxin-like superfamily protein |... 1114 0.0 > AT1G80230.1 | Symbols: | Rubredoxin-like superfamily protein | chr1:30169456-30171101 REVERSE LENGTH=946 Length=946 Score = 1114 bits (603), Expect = 0.0 Identities = 721/776 (93%), Gaps = 16/776 (2%) Strand=Plus/Plus Query 1 TTGAAGGAGGTAGTCGGAGACTGAGAATCATCTGAGATCGG-AACGATAAACCTAATTTT 59 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 23 TTGAAGGAGGTAGTCGGAGACTGAGAATCATCTGAGATCGGAAACGACAAACCTAATTTT 82 Query 60 CCCGAAGAATCGTCACCATTATGTGGAGGAGAATCCTTTCATCGAATCTTAAATCCATCT 119 |||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 83 CCCGAAGAATCGAGACCATTATGTGGAGGAGAATCGTTTCATCGCATCTTAAATCCATCT 142 Query 120 CCGCCGGT-TGGTCCTGCGCGGCTCCGTCGTGTAGACACGCCGTTGTTGAGTCCACTCAC 178 ||||| || |||||||||||||||||||||| || |||||||| || |||||||||||| Sbjct 143 CCGCC-GTCGGGTCCTGCGCGGCTCCGTCGTGCAGGCACGCCGTCGTAGAGTCCACTCAC 201 Query 179 CTTTCTCTCTCGACTCGTGCATCCTCCATTCCCGCATATTCCTCGGTTTTCTCTCGTCAA 238 |||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | Sbjct 202 CTTTCTCTCTCGACTCGTGCATCCTCCATTCCCGCATATTCCTCCATATTCTCTCGTTTA 261 Query 239 ATCGGCTCCACTGCAGCGGATACTGCTGTGAAGAAGCGTGTTGAAGATGTGATGCCGATT 298 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 262 ATCGGCTCCGCTGCAGCGGATACTGCTGTGAAGAAGCGTGTTGAAGATGTGATGCCTATT 321 Query 299 GCAACTGGGCACGAGAAAGAGGAACTAGAAGCCGAATTGGAGGGAAGGAAGCTGGACGAT 358 ||||| || |||||||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct 322 GCAACCGGTCACGAGAAAGAGGAACTACAAGCCGAATTGGAGGGGAGGAAGCTGGACGAT 381 Query 359 ATAGACTTTCCCGAGGGGCCTTTTGGAACAAAGGAAGCTCCTGCTGTAGTCAAATCCTAC 418 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 382 ATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGGAAGCTCCTGCTGTAGTCAAATCCTAC 441 Query 419 TACGACATGAGAATTGTTGGTTGCCCTGGAGGTGAAGGAGAGGATGAGCATGATGTTGTC 478 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 442 TACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAGAGGATGAGCATGATGTTGTC 501 Query 479 TGGTTTTGGTTGGAGAAGGGCAAG-CATTTTGAATGCCCTGTGTGTACTCAGTACTTTAA 537 ||||||||| ||||||| |||||| | ||||||||||||||||||||| |||||||| || Sbjct 502 TGGTTTTGGCTGGAGAAAGGCAAGTC-TTTTGAATGCCCTGTGTGTACACAGTACTTCAA 560 Query 538 GCTTGAAGTGGTCGGCCCTGGAGGACCACCTGACGGACATGGTGATGACCATCACTGATC 597 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 561 GCTTGAAGTGGTCGGCCCTGGAGGACCTCCTGACGGACATGGTGATGACCATCACTGATC 620 Query 598 CAAGGAAA-CAATCTATTGTAATAAGAAAGAGTATGGCTTCTG--AAATGTGAAGC--C- 651 |||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||| | Sbjct 621 CAAGGAAAACAATCTATTGTAATAAGAAATAGTGTGGCTTCTGCTAAATGTGAAGCAGCC 680 Query 652 TCGTCTTGTTCttttttttt--ttttAAGTTC-ATCCTCAGTGCTCTACCAATTGCCTCA 708 |||||||||| ||||||||| |||||| ||| | ||||||| ||||||||||||| ||| Sbjct 681 TCGTCTTGTTTTTTTTTTTTGGTTTTAA-TTCTACCCTCAGTTCTCTACCAATTGCTTCA 739 Query 709 GCGATTGCCTCAGACCGACGAAAATAGGATGGTCCATCTTCAGGCTCTCGTCGCCA 764 | |||||||| | |||| ||||||||| |||||||||||||||||||||||||||| Sbjct 740 GTGATTGCCTTAAACCGCCGAAAATAG-ATGGTCCATCTTCAGGCTCTCGTCGCCA 794 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37123034633 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5