BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477231
Length=764
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80230.1 | Symbols: | Rubredoxin-like superfamily protein |... 1114 0.0
> AT1G80230.1 | Symbols: | Rubredoxin-like superfamily protein
| chr1:30169456-30171101 REVERSE LENGTH=946
Length=946
Score = 1114 bits (603), Expect = 0.0
Identities = 721/776 (93%), Gaps = 16/776 (2%)
Strand=Plus/Plus
Query 1 TTGAAGGAGGTAGTCGGAGACTGAGAATCATCTGAGATCGG-AACGATAAACCTAATTTT 59
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 23 TTGAAGGAGGTAGTCGGAGACTGAGAATCATCTGAGATCGGAAACGACAAACCTAATTTT 82
Query 60 CCCGAAGAATCGTCACCATTATGTGGAGGAGAATCCTTTCATCGAATCTTAAATCCATCT 119
|||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 83 CCCGAAGAATCGAGACCATTATGTGGAGGAGAATCGTTTCATCGCATCTTAAATCCATCT 142
Query 120 CCGCCGGT-TGGTCCTGCGCGGCTCCGTCGTGTAGACACGCCGTTGTTGAGTCCACTCAC 178
||||| || |||||||||||||||||||||| || |||||||| || ||||||||||||
Sbjct 143 CCGCC-GTCGGGTCCTGCGCGGCTCCGTCGTGCAGGCACGCCGTCGTAGAGTCCACTCAC 201
Query 179 CTTTCTCTCTCGACTCGTGCATCCTCCATTCCCGCATATTCCTCGGTTTTCTCTCGTCAA 238
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct 202 CTTTCTCTCTCGACTCGTGCATCCTCCATTCCCGCATATTCCTCCATATTCTCTCGTTTA 261
Query 239 ATCGGCTCCACTGCAGCGGATACTGCTGTGAAGAAGCGTGTTGAAGATGTGATGCCGATT 298
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 262 ATCGGCTCCGCTGCAGCGGATACTGCTGTGAAGAAGCGTGTTGAAGATGTGATGCCTATT 321
Query 299 GCAACTGGGCACGAGAAAGAGGAACTAGAAGCCGAATTGGAGGGAAGGAAGCTGGACGAT 358
||||| || |||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 322 GCAACCGGTCACGAGAAAGAGGAACTACAAGCCGAATTGGAGGGGAGGAAGCTGGACGAT 381
Query 359 ATAGACTTTCCCGAGGGGCCTTTTGGAACAAAGGAAGCTCCTGCTGTAGTCAAATCCTAC 418
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 ATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGGAAGCTCCTGCTGTAGTCAAATCCTAC 441
Query 419 TACGACATGAGAATTGTTGGTTGCCCTGGAGGTGAAGGAGAGGATGAGCATGATGTTGTC 478
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 TACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAGAGGATGAGCATGATGTTGTC 501
Query 479 TGGTTTTGGTTGGAGAAGGGCAAG-CATTTTGAATGCCCTGTGTGTACTCAGTACTTTAA 537
||||||||| ||||||| |||||| | ||||||||||||||||||||| |||||||| ||
Sbjct 502 TGGTTTTGGCTGGAGAAAGGCAAGTC-TTTTGAATGCCCTGTGTGTACACAGTACTTCAA 560
Query 538 GCTTGAAGTGGTCGGCCCTGGAGGACCACCTGACGGACATGGTGATGACCATCACTGATC 597
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 561 GCTTGAAGTGGTCGGCCCTGGAGGACCTCCTGACGGACATGGTGATGACCATCACTGATC 620
Query 598 CAAGGAAA-CAATCTATTGTAATAAGAAAGAGTATGGCTTCTG--AAATGTGAAGC--C- 651
|||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||| |
Sbjct 621 CAAGGAAAACAATCTATTGTAATAAGAAATAGTGTGGCTTCTGCTAAATGTGAAGCAGCC 680
Query 652 TCGTCTTGTTCttttttttt--ttttAAGTTC-ATCCTCAGTGCTCTACCAATTGCCTCA 708
|||||||||| ||||||||| |||||| ||| | ||||||| ||||||||||||| |||
Sbjct 681 TCGTCTTGTTTTTTTTTTTTGGTTTTAA-TTCTACCCTCAGTTCTCTACCAATTGCTTCA 739
Query 709 GCGATTGCCTCAGACCGACGAAAATAGGATGGTCCATCTTCAGGCTCTCGTCGCCA 764
| |||||||| | |||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 740 GTGATTGCCTTAAACCGCCGAAAATAG-ATGGTCCATCTTCAGGCTCTCGTCGCCA 794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37123034633
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5