BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477234
Length=1831
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80210.1 | Symbols: BRCC36A, AtBRCC36A | Mov34/MPN/PAD-1 fam... 1773 0.0
AT3G06820.2 | Symbols: BRCC36B, AtBRCC36B | Mov34/MPN/PAD-1 fam... 1613 0.0
AT1G80200.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 255 8e-67
> AT1G80210.1 | Symbols: BRCC36A, AtBRCC36A | Mov34/MPN/PAD-1 family
protein | chr1:30162835-30165755 REVERSE LENGTH=1870
Length=1870
Score = 1773 bits (960), Expect = 0.0
Identities = 1068/1120 (95%), Gaps = 8/1120 (1%)
Strand=Plus/Plus
Query 30 ATCTCTTCCGAAGAAGTAATAATGTCTCTGACATGCGTTAATATGTCCGAGGATGTCTGG 89
||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct 110 ATCTCTTCCGAAGAAGT--T-ATGTCTCTTACATGCGTTAATATGTCCGAGGATGTCTGG 166
Query 90 TTGACTTGCCTCACTCACGCATTATCCACCGAGACCGAAGAGATCATGGGTCTCCTTCTC 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 TTGACTTGCCTCACTCACGCATTATCCACCGAGACCGAAGAGATCATGGGTCTCCTTCTC 226
Query 150 GGCGACATCGAGGCACTCAAAGAACGGCG-AAGTGCCACAGCTATGATCTGGGGAGCATC 208
|||||||||||| |||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct 227 GGCGACATCGAGT-ACTCAAAGGACGGGGGAAGTGCCACAGCTATGATCTGGGGAGCATC 285
Query 209 GCCTCAGTCACGGTCTGATCGGCAGAAGGATCGAGTTGAAACCAATCCTGAACAATTGGC 268
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 286 GCCTCAGTCACGGTCTGATCGGCAGAAGGATAGAGTTGAAACCAATCCTGAACAACTGGC 345
Query 269 TGCTGCTTCTGCTCAGGCTGATAGAATGACGATATCAACGGGCAGAACTACACGGGTGAT 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 346 TGCTGCTTCTGCTCAGGCTGATAGAATGACGATATCAACGGGCAGAACTACACGGGTCAT 405
Query 329 TGGATGGTACCACTCCCATCCTCATATTACCGTTCTTCCTTCCCATGTTGATGTTCGGAC 388
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 406 TGGATGGTACCACTCCCATCCTCATATTACCGTTCTTCCTTCCCATGTCGATGTTCGAAC 465
Query 389 ACAAGCTATGTATCAGCTTTTAGATTCTGGTTTTATTGGCCTCATAGTCTCCTGTTTTAG 448
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 466 ACAAGCTATGTATCAGCTTTTAGATTCTGGTTTTATTGGCCTCATCTTTTCCTGTTTTAG 525
Query 449 TGAAGATGCTAACAAGGTTGGTAGAATCCAAGTTATTGCTTTCCAGTCTTCTGATGGAAA 508
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 526 TGAAGATGCTAACAAGGTTGGCAGAATCCAAGTTATCGCTTTCCAGTCTTCTGATGGAAA 585
Query 509 GCCGAATAGTATTCCTAAACCAGTCAGCCTGGTACTTGCAAATAAAGACTCTGTCATCGA 568
||||||||||||||||||| || | |||||||| |||||||||||||| ||||| |||||
Sbjct 586 GCCGAATAGTATTCCTAAATCAATGAGCCTGGTTCTTGCAAATAAAGATTCTGTTATCGA 645
Query 569 TTTAGAATCGTCATTTAGTTCTTCGGACTCGATATACCAGAGATCCTCTTCTGCTCGGGG 628
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 646 TTTAGAATCTTCATTTAGTTCTTCGGACTCGATATACCAGAGATCGTCTTCTGCTCGGGG 705
Query 629 AGACACTCCCGAGCTAGACACAAGTGATACAGCTACAACTTCCGGATCTAAGGGTGGAGG 688
||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 AGACAATCCTGAGCTCGACACAAGTGATACAGCTACAACTTCCGGATCTAAGGGTGGAGG 765
Query 689 ACGGGTTTCAGATTTTGGGGCTTTCTTTGTCAACAATACTGAGGCCAACAGCACCGGAGG 748
||| ||||||||||||| |||||||||||| ||||||||||||||||||| |||| || |
Sbjct 766 ACGCGTTTCAGATTTTGAGGCTTTCTTTGTGAACAATACTGAGGCCAACAACACCAGAAG 825
Query 749 AGATGGAACAAGTGGAAACTACAGCA-CA--GCTATCGAAATTGACTCGATGGACATGTC 805
|||||||||||||||||||||||||| || || || |||||||||||||||||||||||
Sbjct 826 AGATGGAACAAGTGGAAACTACAGCAGCACAGCAATAGAAATTGACTCGATGGACATGTC 885
Query 806 TGAAAGTATGCAAGAGGCGATGCTCCGTTCAAATTTAGAAACCAGTGGTGTGGAGTATGT 865
|||||||||||||||||| |||| ||| ||||||||||||||||||||||||| ||||||
Sbjct 886 TGAAAGTATGCAAGAGGCAATGCACCGCTCAAATTTAGAAACCAGTGGTGTGGGGTATGT 945
Query 866 TAGAAAAGAAGTCCCACTTCATGTTTTGCCGACTTCATCCCTTCTTCAACTGAATTCACC 925
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 946 TAGAAAAGAAGTCCCACTTCATGTTTTGCCGACTTCATCCCTTCTTCAACTCAATTCACC 1005
Query 926 TTTAGCATCTTTTAGAAGCCTGCAACGAGTACTCTATGAGGAAGAACGAGCAGCGTACCA 985
|||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1006 TTTAGCATCTTTTAAAAGCCTGCAACGAGTACTCTACGAGGAGGAACGAGCAGCGTACCA 1065
Query 986 CCAATCCGTGCAGCAAAGCATGAGAGACGGGAGAGTTCATCCTCTTGCTTTCATTCACAA 1045
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1066 CCAATCCGTGCAGCAAAGCAAGAGAGACGGGAGAGTTCATCCTCTTGCTTTCATTCACAA 1125
Query 1046 CACATCAACATATCAGGCTTCCATGTGCAAGTTGATCGAATACTGCTTGAGTCCTGCCAT 1105
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1126 CACATCAACATATCAGGCTTCCATGTGCAAGTTAATAGAATACTGCTTGAGTCCTGCCAT 1185
Query 1106 TAACGCACTTCAAGATAGGCTGAAGGAGAACAAGATCCGG 1145
||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 TAACGCACTTCAAGATAGGCTGAAGGAGAACAAGATCCGG 1225
Score = 924 bits (500), Expect = 0.0
Identities = 607/657 (92%), Gaps = 13/657 (2%)
Strand=Plus/Plus
Query 1177 GTTAGCAATGCTGATGCATGAAGCTGAGGTTTTGGAAGCACAGAAACTTAAAGGAGCAGA 1236
|||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1225 GTTAGCAATGCTGATGGATGAAGCTGAAGTTTTGGAAGCACAGAAACTGAAAGGAGCAGA 1284
Query 1237 GACAAGCGGGGGACCATCTCGTCTGGTTCACGGTTCTGGCAGCCGAAGCAGAAGAGGATC 1296
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1285 GACAAGCGGGGGAGCATCTCGTCTGGTTCACGGTTCTGGCAGCCGAAGCAGAAGACGATC 1344
Query 1297 GTAGAAAGATGTGCGACTAAAGGCGCATGCCTTCCTCTTTGTGTATGTTTCTATTTGGGC 1356
|||||||||| || |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1345 GTAGAAAGATCTGTGACTAAAGGCACATGCCTTCCTCTTTGTGTATGTTTCTATTTGGAT 1404
Query 1357 ATTTGTTTTCTTACAACTGTATCATAGGCAGACATCTGTTGTTAGTTTACCCATCTGTAG 1416
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1405 ATTTGTTTTCTTACAACTGTATCATAGGCAGACATCTGTTCTTAGTTTACTCATCTGTAG 1464
Query 1417 CATTATT-GGtttttttctttttCATGGAAGATGAACTTTTTCCAAGAGATGCTGTAATA 1475
||||||| || ||||||| |||||||||||||| ||| ||||||||||||| |||| | |
Sbjct 1465 CATTATTGGGGTTTTTTCATTTTCATGGAAGATTAACCTTTTCCAAGAGAT-CTGT-A-A 1521
Query 1476 TATGTATAGCAAATTCATAATGAATATGAGGAGGAAAAGAAAAAGTGAACCTTGATTGCC 1535
|| ||| ||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1522 TA--TAT--CAAATTCATAATGGATATGAGGTGGAAAAGAAAAAGTGAACCTTGATTGCA 1577
Query 1536 TAATCATGATGAAAATTTGATGGTAAAGTTACAGCAGCTTTTTGTCTCAGAAAATAACAG 1595
|| |||||||||||| ||||||| |||||||||| ||| |||| ||||||||||||||||
Sbjct 1578 TATTCATGATGAAAA-TTGATGGGAAAGTTACAGAAGC-TTTT-TCTCAGAAAATAACAG 1634
Query 1596 TTTCTGTGTTGGCTAGAGGAAAAGTGAGTTCTTCTACGTCATGGAATCTAAGAAGTTAGT 1655
||||| ||||| || |||||||||||||||||||| || ||||||||| |||||||||
Sbjct 1635 TTTCTCTGTTGTTTAAAGGAAAAGTGAGTTCTTCTAGGTGTTGGAATCTATGAAGTTAGT 1694
Query 1656 GAAGCAGAAGCCTAGTCTCCTTTAGAGGATTTGGAAAGGG-GCATAGATGTACAACATCT 1714
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||
Sbjct 1695 GAAGCAGAAGCCTAGTCTCCTTTAGAGGATTTGGAAAGGGTG-ATAGATGTACAACACCT 1753
Query 1715 GATGATCTTCCTGACGTCGCTTCGCATGGAGAGAAATGCAGAAAGTGAAGCGAGAAAGAG 1774
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1754 GATGATCTTCCTGACGTCGCTTCGCATGGAGAGAAATGCAGAAAGTGAAGCTAGAAACAG 1813
Query 1775 GGTTGGGTAGACACGAACAGAGTCTCTATGGGGGCTTATCCAATCGTGAGCGGAGTC 1831
|||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||
Sbjct 1814 TGTTGGGTAGACACGAACAGAGTTTCTGTGGGGGCTTATCCAATCGTGAGCAGAGTC 1870
Score = 56.5 bits (30), Expect = 9e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1 AAAGAGGCAAAATCAAATCGAATTCTCGAA 30
||||||||||||||||||||||||||||||
Sbjct 45 AAAGAGGCAAAATCAAATCGAATTCTCGAA 74
> AT3G06820.2 | Symbols: BRCC36B, AtBRCC36B | Mov34/MPN/PAD-1 family
protein | chr3:2150847-2153440 REVERSE LENGTH=1574
Length=1574
Score = 1613 bits (873), Expect = 0.0
Identities = 1047/1128 (93%), Gaps = 24/1128 (2%)
Strand=Plus/Plus
Query 30 ATCTCTTCCGAAGAAGTAATAATGTCTCTGACATGCGTTAATATGTCCGAGGATGTCTGG 89
|||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 156 ATCTCTTCGGAAGAAGTAATAATGTCTCTGACATGCGTAAATATGTCGGAGGATGTCTGG 215
Query 90 TTGACTTGCCTCACTCACGCATTATCCACCGAGACCGAAGAGATCATGGGTCTCCTTCTC 149
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 216 TTGACTTGCCTCACTCACGCATTATCCACCGAGACCGAAGAAATCATGGGTCTCCTTCTC 275
Query 150 GGCGACATCGAGGCACTCAAAGAACGGCG-AAGTGCCACAGCTATGATCTGGGGAGCATC 208
||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 276 GGCGACATCGA-GTACTCAAAGAACGGCGAAAGTGCCACAGCTATGATCTGGGGAGCATC 334
Query 209 GCCTCAGTCACGGTCTGATCGGCAGAAGGATCGAGTTGAAACCAATCCTGAACAATTGGC 268
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 GCCTCAGCCACGATCTGATCGGCAGAAGGATCGAGTTGAAACCAATCCTGAACAATTGGC 394
Query 269 TGCTGCTTCTGCTCAGGCTGATAGAATGACGATATCAACGGGCAGAACTACACGGGTGAT 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 395 TGCTGCTTCTGCTCAGGCTGATAGAATGACGATATCAACGGGCAGAACTACACGGGTCAT 454
Query 329 TGGATGGTACCACTCCCATCCTCATATTACCGTTCTTCCTTCCCATGTTGATGTTCGGAC 388
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 455 TGGATGGTACCACTCCCATCCTCATATTACCGTTCTTCCTTCCCATGTCGATGTTCGGAC 514
Query 389 ACAAGCTATGTATCAGCTTTTAGATTCTGGTTTTATTGGCCTCATAGTCTCCTGTTTTAG 448
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 515 ACAAGCTATGTATCAGCTTTTAGATTCTGGTTTTATTGGCCTCATATTTTCCTGTTTTAG 574
Query 449 TGAAGATGCTAACAAGGTTGGTAGAATCCAAGTTATTGCTTTCCAGTCTTCTGATGGAAA 508
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 575 TGAAGATGCTAACAAGGTTGGTAGAATCCAAGTTATCGCTTTCCAGTCTTCTGATGGAAA 634
Query 509 GCCGAATAGTATTCCTAAACCAGTCAGCCTGGTACTTGCAAATAAAGACTCTGTCATCGA 568
||||||||||||||||||| || | |||||||| ||||| |||||||| |||||||||||
Sbjct 635 GCCGAATAGTATTCCTAAATCAATGAGCCTGGTTCTTGCTAATAAAGATTCTGTCATCGA 694
Query 569 TTTAGAATCGTCATTTAGTTCTTCGGACTCGATATACCAGAGATCCTCTTCTGCTCGGGG 628
| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||
Sbjct 695 TATAGAATCTTCATCTAGTTCTTCGGACTCGATATACCAGCGATCCTCTTCTTCTA---- 750
Query 629 AGACACTCCCGAGCTAGACACAAGTGATACAGCTACAACTTCCGGATCTAAGGGTGGAGG 688
|| | | | ||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 751 AG-C-C-C--GAGCTAGACACAATTGATACTGCTACAACTTCCGGATCTAAGGGTGGAGG 805
Query 689 ACGGGTTTCAGATTTTGGGGCTTTCTTTGTCAA-CAATACTGAGGCCAACAGCACCGG-A 746
||||||||||||||||||| |||||||| ||| ||||| ||||||||| | |||||| |
Sbjct 806 ACGGGTTTCAGATTTTGGGCCTTTCTTTA-CAAACAATATTGAGGCCAATATCACCGGCA 864
Query 747 GGAGATGGAAC--A-AG-T--GGAAA-CT-A-CAGCACAGCTATCGAAATTGACTCGATG 797
| ||||| ||| | | | || || || | ||||||| |||| | |||||||||||||
Sbjct 865 G-AGATGAAACTCACAAATCAGGCAATCTCAGCAGCACAACTATAGGAATTGACTCGATG 923
Query 798 GACATGTCTGAAAGTATGCAAGAGGCGATGCTCCGTTCAAATTTAGAAACCAGTGGTGTG 857
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
Sbjct 924 GACATGTCTGAAAGTATGCAAGAGGCAATGCTCCGTTCAAATTTAGATACCAGTGGTGCG 983
Query 858 GAGTATGTTAGAAAAGAAGTCCCACTTCATGTTTTGCCGACTTCATCCCTTCTTCAACTG 917
| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
Sbjct 984 GGGTATGTTAGAAAAGAAGTCCCACTTCATGTTTTGCCAACTTCATCCCTTCTTCCAGTC 1043
Query 918 AATTCACCTTTAGCATCTTTTAGAAGCCTGCAACGAGTACTCTATGAGGAAGAACGAGCA 977
|||||||||||||||||||||| |||||||||||||||||| || ||||| |||||||||
Sbjct 1044 AATTCACCTTTAGCATCTTTTAAAAGCCTGCAACGAGTACTGTACGAGGAGGAACGAGCA 1103
Query 978 GCGTACCACCAATCCGTGCAGCAAAGCATGAGAGACGGGAGAGTTCATCCTCTTGCTTTC 1037
|||||| ||||||| |||||||||| ||||||||| ||| ||||||||||||||||||||
Sbjct 1104 GCGTACTACCAATCAGTGCAGCAAAACATGAGAGATGGGCGAGTTCATCCTCTTGCTTTC 1163
Query 1038 ATTCACAACACATCAACATATCAGGCTTCCATGTGCAAGTTGATCGAATACTGCTTGAGT 1097
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1164 ATTCACAACACATCAACATATCAAGCCTCCATGTGCAAGTTGATCGAATACTGCTTGAGT 1223
Query 1098 CCTGCCATTAACGCACTTCAAGATAGGCTGAAGGAGAACAAGATCCGG 1145
|||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1224 CCTGCCATTAACGCACTTCAAGATAGGCAGAAGGAGAACAAGATCCGG 1271
Score = 274 bits (148), Expect = 2e-72
Identities = 185/203 (91%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 1177 GTTAGCAATGCTGATGCATGAAGCTGAGGTTTTGGAAGCACAGAAACTTAAAGGAGCAGA 1236
|||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1271 GTTAGCAATGCTGATGGATGAAGCTGAGGTTTTGGAGGCACAAAAACTTAAAGGAGCAGA 1330
Query 1237 GACAAGCGGGGGACCATCTCGTCTGGTTCACGGTTCTGGCAGCCGAAGCAGAAGAGGATC 1296
||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1331 GACAAGCCGGAGACCATCTCATCTGGTTCACGGTTCTGGCAGCCGAAGCAGAAGAGGATC 1390
Query 1297 GTAGAAAGATGTGCGACTAAAGGCGCATGCCT-TCCTCTTTGTGTATGTTTCTATTTGGG 1355
||||||||| ||| ||||||| | |||||| || ||||||||||| |||||||||||
Sbjct 1391 GTAGAAAGACCTGCAACTAAAGACACATGCCCGTCTTCTTTGTGTATATTTCTATTTGGA 1450
Query 1356 CATTTGTTTTCTTACAACTGTAT 1378
|||||||||||||||| |||||
Sbjct 1451 CATTTGTTTTCTTACAT-TGTAT 1472
> AT1G80200.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G11280.1); Has
49 Blast hits to 49 proteins in 13 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:30162034-30162999
FORWARD LENGTH=705
Length=705
Score = 255 bits (138), Expect = 8e-67
Identities = 157/166 (95%), Gaps = 2/166 (1%)
Strand=Plus/Minus
Query 1667 CTAGTCTCCTTTAGAGGATTTGGAAAGGG-GCATAGATGTACAACATCTGATGATCTTCC 1725
||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||
Sbjct 705 CTAGTCTCCTTTAGAGGATTTGGAAAGGGTG-ATAGATGTACAACACCTGATGATCTTCC 647
Query 1726 TGACGTCGCTTCGCATGGAGAGAAATGCAGAAAGTGAAGCGAGAAAGAGGGTTGGGTAGA 1785
|||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 646 TGACGTCGCTTCGCATGGAGAGAAATGCAGAAAGTGAAGCTAGAAACAGTGTTGGGTAGA 587
Query 1786 CACGAACAGAGTCTCTATGGGGGCTTATCCAATCGTGAGCGGAGTC 1831
|||||||||||| ||| ||||||||||||||||||||||| |||||
Sbjct 586 CACGAACAGAGTTTCTGTGGGGGCTTATCCAATCGTGAGCAGAGTC 541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90611983725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5