BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477239
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80170.1 | Symbols: | Pectin lyase-like superfamily protein... 2266 0.0
> AT1G80170.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:30153408-30155713 REVERSE LENGTH=1603
Length=1603
Score = 2266 bits (1227), Expect = 0.0
Identities = 1402/1486 (94%), Gaps = 14/1486 (1%)
Strand=Plus/Plus
Query 1 TCTAAATTATGAGTTATTCATGCGGTACTACTGTTGTTGTCACCCTTTTG-T--TACTAG 57
|||||||||||||||||||| |||| ||| | ||||||| |||||| | ||||||
Sbjct 23 TCTAAATTATGAGTTATTCACGCGGCGGTAC---TCTTGTCACTCTTTTGTTACTACTAG 79
Query 58 TGGTGGCCTCCTCACTCGCTCTGACCGCAAACGCGGATTCGTTCGAATCGCTCCTCCAGC 117
| || ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 80 TCGTAGCCTCCTCACTCGCTTTGACCGCAAACGCGAATTCGTTCGAATCGCTCCTCCAGC 139
Query 118 TCCCGCGAAGACAGTCGCGCTCGACCCGACCCAGATCCGAAAGGCTCCTCCACGTCGGCA 177
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 140 TCCCGCGGAGACAGTCGCGCTCGACCCGACCCAGATCCGAACGGCTCCTCCACGTTGGCA 199
Query 178 AATTTGGTGCCAAAGGCAATGGCTTCACCGACGACACTAAAGCGTTTGCAGATGCTTGGA 237
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 200 ATTTTGGTGCCAAAGGCAATGGCGTCACCGACGACACTAAAGCGTTTGCAGATGCTTGGA 259
Query 238 AGACAGCTTGTTCTTCCAAAGTCAAAACCAGAATCTTGGTGCCTGAAAACTACACCTGTC 297
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 260 AGACAGCTTGTTCTTCCAAAGTCAAAACCAGAATCTTGGTGCCTGAAAATTACACTTGTC 319
Query 298 TCCTCCGGCCCATTGATCTTTCTGGACCTTGTAAAGCAAGACTCACACTCCAGATCTCTG 357
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 TCCTTCGGCCTATTGATCTTTCTGGACCTTGTAAAGCAAGACTCACACTCCAGATCTCTG 379
Query 358 GTACAATCATTGCTCCCAATGATCCAGATGCTTGGGAAGGTCTAAACCGCCGCAAATGGC 417
|||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||
Sbjct 380 GTACAATCATTGCTCCCAATGATCCAGATGTTTGGGAAGGTCTTAACCGCCGAAAATGGC 439
Query 418 TGTATTTCCATGGTTTGAGCCGCTTGACGGTTGAAGGAGGTGGCACTGTTAATGGAATGG 477
| ||||||||||||||||||||||| || ||||||||||| ||||||||||| || ||||
Sbjct 440 TATATTTCCATGGTTTGAGCCGCTTAACTGTTGAAGGAGGCGGCACTGTTAACGGGATGG 499
Query 478 GCCAAGAATGGT-GGACAAGATCTTGCAAACACAATCATTCCAACCCTTGTCGAGGCGCT 536
| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 500 GGCAAGAATGGTGGGA-AAGATCTTGCAAACACAATCATTCCAACCCTTGTCGAGGTGCT 558
Query 537 CCAACGGCCATAACATTCCACAAGTGCAAGAATATGAGAGTTGAAAACCTCAATGTGATT 596
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 559 CCAACGGCCTTAACATTCCACAAGTGCAAGAATATGAGAGTTGAGAACCTCAATGTGATT 618
Query 597 GATAGCCAACAAATGCACATTGCCTTCACCAGCTGTCGCCGTGTGGCCATCTCTGGTTTA 656
||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 619 GATAGTCAACAAATGCACATTGCCTTAACCAGCTGTCGCCGTGTGACCATCTCTGGTTTA 678
Query 657 AAGGTCATTGCTCCTGCTACTAGTCCCAATACTGATGGAATTCACATAAGCGTCTCCCGT 716
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 679 AAGGTCATAGCTCCTGCTACTAGTCCCAATACTGATGGAATTCACATAAGCGTCTCTCGT 738
Query 717 GGTATCGTGATAGACAACACTACTGTCAGCACAGGAGATGACTGTGTTTCGATAGTTAAA 776
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 739 GGTATCGTTATAGACAACACTACTGTCAGCACAGGAGATGACTGCATTTCGATAGTTAAA 798
Query 777 AACTCTTCACAGATCTCCATCAGCAACATTATATGTGGTCCTGGCCATGGCATAAGCATT 836
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 AACTCTACACAGATCTCCATCAGCAACATTATATGTGGTCCTGGCCATGGCATAAGCATT 858
Query 837 GGAAGCCTAGGAAAATCAGAATCTTGGGAAGAAGTTAGAGACATAACGGTTGATACAGCC 896
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||
Sbjct 859 GGAAGCCTAGGAAAATCAAAATCTTGGGAAGAAGTTAGAGACATAACAGTTGATACGGCC 918
Query 897 TTCATCTCTGACACTGCGAATGGTGTTCGGATCAAAACATGGCAGGGAGGGAGTGGTTTG 956
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 ATCATCTCTGACACTGCGAATGGTGTTCGGATCAAAACATGGCAGGGAGGGAGTGGTTTG 978
Query 957 GTCTCAAAAATTATCTTTAGGAACATCAAGATGAACAATGTGTCAAACCCCATCATCATC 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 GTCTCAAAAATTATCTTTAGGAACATCAAGATGAACAATGTGTCAAACCCCATCATCATC 1038
Query 1017 GATCAGTATTACTGCGATTCTCGGAAGCCGTGTGCGAATCAGACATCAGCTCTTAGCATT 1076
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1039 GATCAGTATTACTGCGATTCTAGGAAGCCGTGTGCGAATCAGACATCAGCTATTAGCATT 1098
Query 1077 GAGAACATCTCATTTGTTCACGTGAGGGGCACTTCAGCAACAAAACAAGCAATCAAGATC 1136
|||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||
Sbjct 1099 GAGAACATCTCATTTGTTCACGTGAGGGGCACCTCAGCATCAAAGGAAGCAATCAAGATC 1158
Query 1137 TCTTGCAGCGATAGTTCACCATGTCGCAACATACTTCTACAAGACGTTGATCTTGAACCA 1196
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1159 TCTTGCAGCGATAGTTCACCATGTCGCAACATACTTCTACAAGACATTGATCTTGAACCA 1218
Query 1197 TCAAGCGGCGATGGTTTCACAGAATCTTTCTGTTGGGAAGCTTATGGTTCTAGTTCGGGT 1256
|||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1219 TCAAACGGTGATGGTTTCACAGAGTCTTTCTGTTGGGAAGCTTATGGTTCTAGTTCGGGT 1278
Query 1257 CAAGTGTACCCTCCTCCTTGCCTTTCAGATGACACAAGCTTCTTGGAACAGTCGGTTCAG 1316
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1279 CAAGTGTACCCTCCTCCTTGTCTTTCAGATGACACAAGCTTCTTAGAACAGTCGGTTCAG 1338
Query 1317 TCCGGGATCACATCTGCATACCTTTGAATTCATGGTTTCAGATTGCAAATCT-GCCACGT 1375
|||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||
Sbjct 1339 TCCGGGATCACATCTGCATACCTTTGAATTCATGTTTTCAGATTGAAAATCTTGCCACGT 1398
Query 1376 TTTTAGTGCACAAGCCAAATG-TTTTAA-ATATATGGTCACATTTTGGCAAATTCAGCTC 1433
|||| ||||||| |||||||| ||||| ||||| | ||| ||||||||||||||| ||
Sbjct 1399 TTTT-GTGCACACGCCAAATGCTTTTATGATATA-G-TCATGTTTTGGCAAATTCAGTTC 1455
Query 1434 ACTAATCTTTCCCTTATCATCGAGTTTATCTCTTATTGCACTCAAT 1479
|| | || ||||||||||| |||||| ||||||||||||||||||
Sbjct 1456 ACCAGTCCATCCCTTATCATTGAGTTTCTCTCTTATTGCACTCAAT 1501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72941391885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5