BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg477243

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G80133.1 | Symbols:  | unknown protein; LOCATED IN: endomemb...   658    0.0  


> AT1G80133.1 | Symbols:  | unknown protein; LOCATED IN: endomembrane 
system; Has 154 Blast hits to 154 proteins in 15 species: 
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants 
- 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 
| chr1:30143628-30144255 REVERSE LENGTH=540
Length=540

 Score =  658 bits (356),  Expect = 0.0
 Identities = 497/559 (89%), Gaps = 34/559 (6%)
 Strand=Plus/Plus

Query  1    ATGGATTCATCAAGAAATTATAAACGATGTAGTTTTGGAGCTGCACTGTTCGTTGTC-AA  59
            |||||||| |||||||| |||||||||||| |||||||||||||||||||||||| | ||
Sbjct  1    ATGGATTCGTCAAGAAAATATAAACGATGTGGTTTTGGAGCTGCACTGTTCGTTG-CTAA  59

Query  60   CATCTTCTTCTCTCT-CATATCTCTACACTACAATATATCTGGGGCACATGGTCATCAAC  118
            ||||||||||||||| | | |||||||||| |   |||||||||||||||||||||||||
Sbjct  60   CATCTTCTTCTCTCTGC-TCTCTCTACACTGC---ATATCTGGGGCACATGGTCATCAAC  115

Query  119  AAAGAATGAAACAATCGGTTTTTGGTTCAGAGCCTCCCGTGTGTGCGACAAAGTGCCTGA  178
            ||||||||||| |||||||| | ||||||||||||||||||||||||||||| |||| ||
Sbjct  116  AAAGAATGAAAGAATCGGTTATGGGTTCAGAGCCTCCCGTGTGTGCGACAAAATGCCGGA  175

Query  179  ACTGCAAGCCTTGCCTTCCTTATCTATTTGACATTCGTGGTGCTCatgatgatgatgatg  238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  176  ACTGCAAGCCTTGCCTTCCTTATCTATTTGACATTCGTGGTGCTCATGATGATGATGATG  235

Query  239  atAGTGAACCATACTATCCGGTTAAGTGGATTTGTAGATGTAGAGACAGAGTATTTGAAC  298
            |||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct  236  ATAGTGAACCATACTATCCGGTAAAGTGGATATGTAGATGTAGAGATAGAGTATTTGAAC  295

Query  299  CTTAAGAACAGTAT--ATATA--CATTATTTATATAGTGTTTTGCTAATGATTCTCATGG  354
            |||||||| |||||  |||||  |||||||||| |||||| |||||  |    |||||||
Sbjct  296  CTTAAGAATAGTATCTATATATACATTATTTATCTAGTGTCTTGCT--T----CTCATGG  349

Query  355  ACGTTCATGAT--G-CCCATGAATGATGGTATCATGATGATGGTTCATTGAAAATTGTCG  411
            | |||||||||  | |||||||||||||| ||||||||| |||||||||| | |||||||
Sbjct  350  ATGTTCATGATCTGACCCATGAATGATGGCATCATGATGGTGGTTCATTGGATATTGTCG  409

Query  412  GGA-TTATACAATCTTTTGATATATAATCAGGTAAACATCTACTCGTTGCTTCGCATGTG  470
            ||| ||||||||||||| ||||| ||||||||||||||| ||||||| |||| |||||||
Sbjct  410  GGAATTATACAATCTTTCGATATGTAATCAGGTAAACATTTACTCGTGGCTTGGCATGTG  469

Query  471  TTCATAATTGATAGTGATGGTGTATTGGTTTGTAATTGTATTAAGAAAAGaaaaaaaaaa  530
            |||||  | |||||| |||||||||||||  ||    ||||||||||| ||||||||   
Sbjct  470  TTCAT--T-GATAGTCATGGTGTATTGGT--GT----GTATTAAGAAAGGAAAAAAA---  517

Query  531  aGTTGATGATGTGTTTGTC  549
             ||||||||||||||||||
Sbjct  518  -GTTGATGATGTGTTTGTC  535



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26322693028


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5