BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477244
Length=1352
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1831 0.0
> AT1G80130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:30140961-30142646 REVERSE LENGTH=1375
Length=1375
Score = 1831 bits (991), Expect = 0.0
Identities = 1258/1381 (91%), Gaps = 42/1381 (3%)
Strand=Plus/Plus
Query 1 ATATATACACTTATCTTTTACTGTCTAAA-TTAACTAGGCGGCTTACCATTATATAAAGA 59
||||||||||||||||||||| ||||||| |||| || ||||||||||||||||| ||||
Sbjct 5 ATATATACACTTATCTTTTACAGTCTAAATTTAATTATGCGGCTTACCATTATAT-AAGA 63
Query 60 CTCTAGAAGGCTACTCTCA-T-TATACATTATCTAG-TACTCATAAGTGGTTCTTGTTTA 116
|||| | || ||||||||| | |||||||||| || |||| || |||||||||||||||
Sbjct 64 CTCTGGTAGACTACTCTCATTATATACATTATAAAGATACTGATGAGTGGTTCTTGTTTA 123
Query 117 ATGGAGTTTTTAATTT-AAAATATTTGGTAACCGAGTGGATCATCATGTTATTGAGAAGC 175
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 ATGGAGTTTTAAATTTAAAAATATTTGGTAACCGAGTGGATCATCATGTTATTGAGAAGC 183
Query 176 ACATCTGCTCCGATTCTGAACTCGTGGCTTCCACAACACTGCTCCAGAGAATCGTCTCCG 235
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 184 ACATCTGCTCCGATACTGAACTCGTGGCTTCCACAACACTGCTCGAGAGAATCGTCTCCG 243
Query 236 GAGCCGGAGTCACAGCTCCAGCGCAGGTCAAGATCGTTGTCTCTTTTCTCATCAAAGTCA 295
|| ||||||||||||||| |||| |||||| ||| |||||||||||||||||||||||
Sbjct 244 GAACCGGAGTCACAGCTCTGGCGCCGGTCAACATCATTGTCTCTTTTCTCATCAAAGTCC 303
Query 296 ATAGATGGACACACTGGGGAGGTGTTGCATCAAGCTCTCTCCGACCACAAGGAG---AGT 352
||||||||||||||||||||| | |||| ||||||||||| ||| |||||||| | |
Sbjct 304 ATAGATGGACACACTGGGGAGCAGCTGCACCAAGCTCTCTCTGACAACAAGGAGATTATT 363
Query 353 GTTCTTAAATCAAACAGCAGCGAGCACAGCTATAAAACTCCAACATCAAGCAGGCAACGC 412
||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 364 ATTCTTAAATCAAAAAGCAACGAGCACAGCTACAAAACTCCAACATCAAGCAGGCAACGC 423
Query 413 AGGTCATCTTTAGATGAAACACGCTATACaaaaaaaaCTTTGGATCGGTCGTCACCTTTC 472
|||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 424 AGGTCATCTTTAGATGAAACACGCTACACAAAAAAGACTTTGGATCGGTCATCACCTTTC 483
Query 473 TTAGTGGAGAGGCTCTTCTCGAGCTCTGGACTGGGAGACAAGGCCAGTAGTGATGATCGT 532
||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||
Sbjct 484 TTAGTGGAGAGGCTCTTCTCGAGCTCTGGACAGGGAGATAAGGCCAGTAGTAATGATCGT 543
Query 533 CTGGAGACTCTTGTTAGTGGTGGTGGTGGCGGGATGGGAAGCAGCGGCGGCAAGATTTGT 592
|||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 544 CTGGAGACTCTTGTGAGTGGTGGTGGTGGCGGGATGGGAGGCAGCGGCGGCAATATTTGT 603
Query 593 -TC--TGGCGGTGGTGTGGGTGGAAGTGGTATTGACGGCGGTGGGAGTGAGGACGCTACC 649
| ||||||||||| |||||||||||| | ||||||||| |||||||||||||||||
Sbjct 604 AACGGCGGCGGTGGTGTCGGTGGAAGTGGTGTGGACGGCGGTAGGAGTGAGGACGCTACC 663
Query 650 GATACGTATTACAAGGAGATGATCGACTCGAGTCCAGGAAACTCGCTTTTGACTGGAAAC 709
|| ||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 664 GACACGTATTACCGGGAGATGATCGACTCGAATCCAGGAAACTCGCTTTTGACCGGAAAC 723
Query 710 TACGCCAAGTTCTTGAAAGAGGTGAAAGGAGACATGAAGAAAGCAGAAGAGTATTGTGAA 769
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 724 TACGCCAAGTTCTTGAAAGAGGTGAAAGGAGACATGAAAAAAGCAGAAGAGTATTGTGAA 783
Query 770 AGAGCAATTTTGGGGAACACCAACGATGGAAACGTTCTATCTCTCTATGCTGATCTCATT 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 AGAGCAATTTTGGGGAACACCAACGATGGAAACGTTCTATCTCTCTATGCTGATCTCATT 843
Query 830 TTGCACAACCACCGAGATCGTCAAAGAGCCCACTCTTACTATCAGCAAGCCGTCAAAATG 889
||||||||||| | |||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 844 TTGCACAACCATCAAGATCGTCAAAGAGCCCACTCTTACTATAAGCAAGCCGTCAAGATG 903
Query 890 TCCCCGGAAGATTGCTATGTGCAAGCTTCATACGCAAGGTTTCTGTGGGATGTGGAAGAG 949
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 904 TCCCCGGAAGATTGTTATGTGCAAGCTTCATACGCAAGGTTTCTGTGGGATGTGGATGAG 963
Query 950 GACGAAGA---TGAAG-----G-AGAAGAAGAAGAGCAAAG-GAGTGATGAAACTGGCCA 999
|||||||| ||||| | ||||||||||||| || ||||||||||||||||||
Sbjct 964 GACGAAGAAGATGAAGCATTAGGAGAAGAAGAAGAG-AACTTGAGTGATGAAACTGGCCA 1022
Query 1000 TGTGCCTCCAACTACCATCTTCCGTGATTTTCCCCAACACACTTCTATTACCGCATCATC 1059
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 TGTGCCTCCAACTACCATGTTCCGTGATTTTCCCCAACACACTTCTATTACCGCATCATC 1082
Query 1060 CTAAGACACATATATGTACACCTTCGTGAGTGTTCGCATTTAAATAAATAACATATATAG 1119
||||||||||||| | |||||||||||| |||||| ||||| ||||||||||||||||
Sbjct 1083 CTAAGACACATAT--GAACACCTTCGTGAATGTTCGTATTTAGGTAAATAACATATATAG 1140
Query 1120 AAGCATGTTTAATACACATATTTAAATGCAATATGCGTGTATAATATATGTTAAGAATCT 1179
|||||| ||||||||||||| | ||||||||||||||||||||||||||||| |||||||
Sbjct 1141 AAGCATATTTAATACACATACTCAAATGCAATATGCGTGTATAATATATGTTCAGAATCT 1200
Query 1180 TTGTATATGTTCTGTAGTCTTTACTCTTTATAATATGGATATGTACTGCTATTTGCAGTA 1239
||||||||||||||||||||| | |||||| || |||||||| |||||||||||
Sbjct 1201 TTGTATATGTTCTGTAGTCTT--C-----ATAATAAGGGTATGTACTTATATTTGCAGTA 1253
Query 1240 TATATGTGTTCTTTTTGTATTGTAAA-T--GAAACTTACCC-TGTTCCTATCGAGATAGA 1295
| ||||||| ||||||||||| |||| | ||||||||||| ||| ||||||||||||||
Sbjct 1254 TTTATGTGT-CTTTTTGTATTATAAAGTATGAAACTTACCCATGT-CCTATCGAGATAGA 1311
Query 1296 CAAAATATTAGGCAGATGTTTGCTGAAA----GTATGATGGAATTGATGATACAGATCGA 1351
|||||||||||||| |||||| | ||| |||||||| |||||||||||||||||||
Sbjct 1312 CAAAATATTAGGCATTTGTTTGTTAAAAAAAAGTATGATGAAATTGATGATACAGATCGA 1371
Query 1352 T 1352
|
Sbjct 1372 T 1372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66565922670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5