BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477247
Length=613
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80100.1 | Symbols: AHP6, HP6 | histidine phosphotransfer pr... 950 0.0
> AT1G80100.1 | Symbols: AHP6, HP6 | histidine phosphotransfer
protein 6 | chr1:30133726-30134735 FORWARD LENGTH=640
Length=640
Score = 950 bits (514), Expect = 0.0
Identities = 588/621 (95%), Gaps = 15/621 (2%)
Strand=Plus/Plus
Query 1 aaaaa-aaa-aTATAGAAAGAGGAAAGATCGAAGCGGAAAACGGGACAAGACGGGTGTGC 58
||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 25 AAAAACAAATATATAGAAAGAGGAAAGATTGAAGCGGAAAACGGGACAAGACGGGTGTGC 84
Query 59 CGTTGTGGATGTTGGGGTTGGGTGTGGACCGGCTTCAAGCCGACATCAACCGGCTCCTAG 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85 CGTTGTGGATGTTGGGGTTGGGTGTGGACCGGCTTCAAGCCGACATCAACCGGCTCCTAG 144
Query 119 CCTCTCTTTTCCACCAGGGAGTGCTGGACGAGCAGTTCTTGCAGCTTCAGCAGCTTCAAG 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 CCTCTCTTTTCCACCAGGGAGTGCTGGACGAGCAGTTCTTGCAGCTTCAGCAGCTTCAAG 204
Query 179 ATGAGACTTCACCAAACTTTGTGTATGATGTCATTAATATCTACTTTGACGAATCCGAGA 238
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 205 ATGAGACTTCACCAAACTTTGTGTATGATGTCATTAATATCTACTTTGATGAATCCGAGA 264
Query 239 AGTTACTCCGGAACCTTAGATTATTGCTGATGGATAGAGAATTCTCGGACTACAAGAAAA 298
|||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 265 AGTTACTCCGCAACCTTAGATTATTGTTGATGGATAGAGAATTCTCGGACTATAAGAAAA 324
Query 299 TAGGATTACACCTGAATCAGTTGGTGGGAAGCAGTTCCAGCATTGGTGCTCGTAGGGTTC 358
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 325 TAGGATTACACCTGAATCAGCTGGTGGGAAGCAGTTCAAGCATTGGTGCTCGTAGGGTTC 384
Query 359 GTAACGTATGCGTTGC-TTTGCGTTCTGCTTCTGAACTTAGCAACCGCCCAGGGTGCTTG 417
||||||| |||||||| ||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 385 GTAACGTCTGCGTTGCCTTT-CGTTCTGCTTCCGAGCTTAGCAACCGCCCAGGGTGCTTG 443
Query 418 AGAGGACTGGAGGTAGTAGAGCATGAGTATCATTACCTCAAGAACATGATGCATGAACTC 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 AGAGGACTGGAGGTAGTAGAGCATGAGTATCATTACCTCAAGAACATGATGCATGAACTC 503
Query 478 TTCCAGCTGGAGCAGCAGAGGCTATTAGCTGCAGGAGTCAGATATCCAATGTAGAATAAT 537
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
Sbjct 504 TTCCAGCTGGAGCAGCAGAGAATATTAGCTGCAGGAGTCAGATATCCAATGTAAAATTAG 563
Query 538 AATTTTAATTTGTCATAAAAAT--GAGAAAGC-TAATTAGTGTGTGAT-AGT-GTGTGTT 592
|||||| ||||||||||| |||||| | ||||||||||||||| | | |||||||
Sbjct 564 AATTTT-----GTCATAAAAATCAGAGAAAACCTAATTAGTGTGTGATGA-TAGTGTGTT 617
Query 593 GTAAGGTACCGAAGCGAAACC 613
|||| |||||||||||||||
Sbjct 618 ATAAGCTACCGAAGCGAAACC 638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29537678436
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5