BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477249
Length=1070
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80090.1 | Symbols: | Cystathionine beta-synthase (CBS) fam... 839 0.0
> AT1G80090.1 | Symbols: | Cystathionine beta-synthase (CBS) family
protein | chr1:30130104-30131940 FORWARD LENGTH=1294
Length=1294
Score = 839 bits (454), Expect = 0.0
Identities = 565/618 (91%), Gaps = 10/618 (2%)
Strand=Plus/Plus
Query 6 ATATGAATAATGAAGTAAACTATGAAAGCATCAAAACAAAGATTAGAAGTTAATCAGCCT 65
|||||||||||||||| ||||| |||||||||||||||||||||||||||| || |||||
Sbjct 8 ATATGAATAATGAAGT-AACTACGAAAGCATCAAAACAAAGATTAGAAGTTCATAAGCCT 66
Query 66 CGTCCCATTTTCCTTCTG-GAC--TGGCTCTGTCCAAAACACAAAACCTCCATGCATTCG 122
||||||||||| ||| || ||| || || | || ||| || ||| || |||||| |||
Sbjct 67 CGTCCCATTTT-CTT-TGAGACTTTGACTATCACCCAAATAC-AAATCTTCATGCAGTCG 123
Query 123 CACAGCCGTTTGATGCAGCTCAAGGTCAAACATCTGATGGTCCACAAGCGGCGGCTGGTC 182
|||||||| |||||||| ||||||||||| |||||||| || |||||||||||||||||
Sbjct 124 TACAGCCGTCTGATGCAGTTCAAGGTCAAAGATCTGATGATCGACAAGCGGCGGCTGGTC 183
Query 183 GAAGTTCCTGATAACGCCACTCTAGCAGACGCCTTGAACACCATGACTATTCTTGGTATC 242
|||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 184 GAAGTTCCTGATAATGCCACTCTAGGGGACGCCTTGAACACTATGACTATTCTTGGTATC 243
Query 243 AAACCGGTGGCAACCCGAGTTAGAGCTGTGCCGGTGGCTGCCAAACCAGACCAATGGCTG 302
||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 244 AAACCGGTGGCAAACCGAGTTAGAGCTGTACCGGTGGCTGCCAAACCAGGCCAATGGCTG 303
Query 303 GGTGCCGGCGGG-TCAATGATAGTAGAGTCGGACAAACAGAGCGGGAGTGCAAGGAAACA 361
|| ||||| ||| |||||||||||||||| ||||||||||||||| |||||||| |||||
Sbjct 304 GGAGCCGG-GGGATCAATGATAGTAGAGTTGGACAAACAGAGCGGAAGTGCAAGAAAACA 362
Query 362 GTACATAGGAGTGGTGACGATGCTGGACGTTGTGGCTCACATCACCGGAGACGACGGCGA 421
|||||||||| ||||||| ||||| |||||||||||||||||| |||| || ||||||||
Sbjct 363 GTACATAGGAATGGTGACCATGCTCGACGTTGTGGCTCACATCGCCGGCGATGACGGCGA 422
Query 422 GAGTGGGCTCGATAAGAAAATGGCTGCTCCTGTCTCTTCTATCATTGGTCATTGTCCTGA 481
||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 423 GAGTGGGCTTGATAAGAAAATGGCTGCCCCTGTCTCTTCTATCATTGGTCATTGCCCTGA 482
Query 482 GGGTCTCAGCCTCTGGTCTCTCAATCCTAATACCAGCATAATGGATTGTATGGAGATGTT 541
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 483 GGGTCTTAGCCTCTGGTCTCTCAATCCTAATACCAGCATCATGGATTGTATGGAGATGTT 542
Query 542 GAGTAAAGGAATCCACAGGGTATTGGTTCCATTGGACAGTAACATAGAAAATATAACAGG 601
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 543 GAGTAAAGGAATCCACAGGGTATTGGTTCCATTGGACAGTAATACAGAAAATATAACAGG 602
Query 602 ACCTGAGTTGGCAAGAGT 619
||||||||||| | ||||
Sbjct 603 ACCTGAGTTGGTA-GAGT 619
Score = 553 bits (299), Expect = 1e-156
Identities = 386/427 (90%), Gaps = 9/427 (2%)
Strand=Plus/Plus
Query 652 AGGAAGAGGATCATAAACAGCTCGTCGACGGGAAAAACCGGAGAGTGTTGTGGACATTCT 711
||| ||||||||||||||||||||||||||||||||| ||||||||| || |||||||||
Sbjct 839 AGGGAGAGGATCATAAACAGCTCGTCGACGGGAAAAATCGGAGAGTGGTGGGGACATTCT 898
Query 712 CGGCTAGTAATCTGAAGGGATGTCATTTAGCCACGTTGTGTTCTTGGTTGCCACTAAATG 771
|||||||| ||||||||||||||||||||||||| ||| |||| |||||||| |||||||
Sbjct 899 CGGCTAGTGATCTGAAGGGATGTCATTTAGCCACATTGCGTTCGTGGTTGCCGCTAAATG 958
Query 772 CACTAGATTTCGTCGAGAAAATCCCAAGAACTCCCTTGTTCACCGCTGCCACCTCAACAC 831
||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 959 CACTAGAGTTCGTCGAGAAAATCCCAAGAACTCTCTTGTTCACCGCTGCTACCTCAACAC 1018
Query 832 CAAGGAGGGAGCTTGTGACGTGTCACGTGACAT-A-CCTTG-CCCAAGTGATCCATATGG 888
|| |||||||||| ||||||||||||||||||| | ||||| |||| |||||||||||||
Sbjct 1019 CAGGGAGGGAGCTCGTGACGTGTCACGTGACATCAACCTTGGCCCAGGTGATCCATATGG 1078
Query 889 TCACCACGAAACGTATTCACAGAGTTTGGGTCGTGGACCAGAACGATAGGCTACAAGGCC 948
|||||||||||||| | |||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1079 TCACCACGAAACGTGTACACAGAGTTTGGGTCGTGGACCAGAACGGTGGGCTACAAGGCC 1138
Query 949 TAGTTTCTCTTACTGACGTCATCGCTGCGGTCCGATCAGCTTTACTTGCCAGAGCTCAGG 1008
| ||||||||||||||| ||||||||| ||||||||| ||||| ||| || |||||| ||
Sbjct 1139 TTGTTTCTCTTACTGACATCATCGCTGTGGTCCGATCCGCTTTGCTTTCCGGAGCTCCGG 1198
Query 1009 ATCTGT---ACCTCT-AGCTTTCAGTCTTCTCTCGAATTAATCAAATTTTCTTTGT-TTT 1063
|||||| | ||| | |||||||||||||||| ||||| ||||||||||||| | |||
Sbjct 1199 ATCTGTTTTAACTCGCAACTTTCAGTCTTCTCTCCAATTACTCAAATTTTCTTT-TATTT 1257
Query 1064 GTTTCTT 1070
|||||||
Sbjct 1258 GTTTCTT 1264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52409368980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5