BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477252
Length=1148
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80040.3 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1075 0.0
> AT1G80040.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING:
15 growth stages; BEST Arabidopsis thaliana protein match
is: Ubiquitin system component Cue protein (TAIR:AT5G32440.1).
| chr1:30109147-30111280 REVERSE LENGTH=1309
Length=1309
Score = 1075 bits (582), Expect = 0.0
Identities = 766/850 (90%), Gaps = 32/850 (4%)
Strand=Plus/Plus
Query 292 CAC-GGTTCTTGTCAAGGCACTAGAAGAAAATGGAAGTGATTTGAATGCTGCTATGAAGA 350
||| |||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 429 CACAGGTTCTCGTCAAGGCACTAGAAGATAATGGAAGTGATTTTAATGCTGCTATGAAGA 488
Query 351 GCTTATACTCCATGGCAGCCGCTGAGGAGAAAG-AAGCTGAAGAATCCTCCGCAGGA-G- 407
|||||||||| | ||| | |||||||| ||| |||||||||||| |||||||| |
Sbjct 489 GCTTATACTCTTTCGCATCTTCTGAGGAG-AAGAAAGCTGAAGAATTGGCCGCAGGAGGT 547
Query 408 G-TGCTAATCAGGAAACTGATGCCGTTTCTGGAGGAAATCCCCCGACCAGTGGTGATGAC 466
| ||||| |||||||||||||||||||| ||| ||||| |||||||||||||||||||||
Sbjct 548 GCTGCTACTCAGGAAACTGATGCCGTTTGTGGTGGAAACCCCCCGACCAGTGGTGATGAC 607
Query 467 TGGGTTGAATTGTTAGTTAGGGAAGTGTTACAATCTTCTGGTACAGATGATGCAAAAGTA 526
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 608 TGGGTTGAATTGTTAGTCAGGGAAGTGTTACAATCGTCTGGTACAGATGATGCAAAAGTA 667
Query 527 CGTGCAGCAAGAGTCCTTGAGGCCTTAGAGAAGATGTTAAGTGCACGTGCTCGTGAAGAA 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 CGTGCAGCAAGAGTCCTTGAGGCCTTAGAGAAGATGTTAAGTGCACGTGCTCGTGAAGAA 727
Query 587 GCTGCaaaaaaaTTCCAAGAGGAGAAAGTGGCAGTGCAGCAACAGGTGGAGGCCTTGGTC 646
|||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 728 GCTGGAAACAAATTCCAAGAGGAGAAAGTGGCAGTGCAGCAACAGGTGGAGACCTTGGTG 787
Query 647 AAGGACAACACAGTCCTAAAACGTGCTGTTGCTATCCAGCATGAGCGGCAGAAGGCATTC 706
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 788 AAGGACAACACAGTCCTCAAACGTGCTGTTGCTATCCAGCATGAGCGGCAGAAGGCATTG 847
Query 707 GAAGATGCGAACCAGCAGCTAGAACTTTTGAAGCAACTGATTCCTCAGTACCAGGAAAAG 766
|| ||||||||||| ||||||| |||||||||||||||| |||||||||| |||||||||
Sbjct 848 GAGGATGCGAACCATCAGCTAGGACTTTTGAAGCAACTGGTTCCTCAGTATCAGGAAAAG 907
Query 767 CTAAGAACTCTGGAGGTGAACAACTACGCGTTGAGAATGCAGCTGCAGCAAGTGGAACAT 826
|| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 908 CTTAGAAATCTGGAGGTGAACAATTACGCGTTGAGAATGCAGCTGCAGCAAGTGGAACAT 967
Query 827 GGCAACTCCATGCCAGGAAGATTCAACCCAGACGTCTTCTAAGGCTCTCCAAGAA-ACAA 885
|||||||| ||||||| ||||||||| || |||||||||||| |||||||||||| ||||
Sbjct 968 GGCAACTCAATGCCAGCAAGATTCAATCCGGACGTCTTCTAAAGCTCTCCAAGAAGACAA 1027
Query 886 GGACACTTGCAG-G-AG-A-A-GGCAATAAACGAAAGTagagggagagaaagagagagag 940
|||||||||||| | || | | ||||||||||||||||||||||||||| |||||||||
Sbjct 1028 GGACACTTGCAGAGGAGGAGAAGGCAATAAACGAAAGTAGAGGGAGAGA--GAGAGAGAG 1085
Query 941 agagagTGATCAAACTACAAAACAAAAGCGCTTT-GCGTTGTATTACTACTGTGTAGTCA 999
|| || | |||||||||||||||||||| ||||| || ||||| | |||||||||||||
Sbjct 1086 AGCGA-T-ATCAAACTACAAAACAAAAGTGCTTTTGCATTGTA--A-TACTGTGTAGTCA 1140
Query 1000 GGACAAACAAACAtttttttttttttttttttttttttCT-TCTTTTATTTGGTTTGCTG 1058
||||||||||||||| | ||| ||| |||||||||| | | ||| ||||||||||||
Sbjct 1141 GGACAAACAAACATTCTGTTTCCTTTCCTTTTTTTTTTATATATTTC-TTTGGTTTGCTG 1199
Query 1059 CTGTTTGTCTGTGGTGATCAGGCGCATTAATTG-GGAAATCAAGGATGTGTGTTTGGTAC 1117
|||||||||| |||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 1200 CTGTTTGTCT--------CAGGCGCATTTATTTTGGAAATCAAGGATGTGT-TTTGGTAC 1250
Query 1118 ATAGGACTGT 1127
||||| ||||
Sbjct 1251 ATAGGGCTGT 1260
Score = 279 bits (151), Expect = 3e-74
Identities = 172/181 (95%), Gaps = 5/181 (3%)
Strand=Plus/Plus
Query 118 GGCCATGTCTGCCGTATATTGCGGAACCAAGAGATCTTACTTCGACGAT-ATTCCTTCTC 176
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 226 GGCCATGTCTGCCGTATATTGCGGAACCAAGAGATCTTACTTCGACGATAATT-CTTCTC 284
Query 177 CGCCCTCTTCTAAGAGGTTCCGATGTTTTTCGCCTTCCAATTCTCCAATCTGGTCCTCTC 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 CGCCCTCTTCTAAGAGGTTCCGATGTTTTTCGCCTTCCAATTCTCCAATCTGGTCCTCTC 344
Query 237 CCTCTCCTTCCTCATCGCTCGATCAGCTTCGCACTTCGTTTCCTCATCTTGAACTCACGG 296
| || | ||||||||||||||||||||||| | || ||||||||||| ||||||||||||
Sbjct 345 C-TC-C-TTCCTCATCGCTCGATCAGCTTCACTCTGCGTTTCCTCATATTGAACTCACGG 401
Query 297 T 297
|
Sbjct 402 T 402
Score = 119 bits (64), Expect = 7e-26
Identities = 99/113 (88%), Gaps = 14/113 (12%)
Strand=Plus/Plus
Query 1 AAAAGGAAAACCC-ATCGAAAACCTAAAACCCGATTAGATTTT-T-AGATACGAAACCTC 57
|||||| |||||| ||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 17 AAAAGG-AAACCCAATCGAAAACCTAAAACCCGATTAGATTTTCTTAGATACGAAACCTC 75
Query 58 T-T--C-----TCCTTCCTCAATCTCTCTCGATCGTCGGAGATTTCTT-CTTC 101
| | | ||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 76 TCTTACGACGCTCCTTCCTCAATCTCTCTCGATCGTCGGAGATT-CTTTCTTC 127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56325011490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5