BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477260
Length=1933
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80000.1 | Symbols: | CASC3/Barentsz eIF4AIII binding | chr... 2361 0.0
> AT1G80000.1 | Symbols: | CASC3/Barentsz eIF4AIII binding | chr1:30092924-30097165
FORWARD LENGTH=2345
Length=2345
Score = 2361 bits (1278), Expect = 0.0
Identities = 1553/1681 (92%), Gaps = 37/1681 (2%)
Strand=Plus/Plus
Query 231 GACTCTG-C-CC-CTGATCTTGTTGATGGAGAGCACCATAAGAAGAAGGAACCTTTCGCA 287
||||||| | || |||||||||| ||||||||| | || ||||||||||||||||| |||
Sbjct 529 GACTCTGCCGCCACTGATCTTGTGGATGGAGAGGAACAAAAGAAGAAGGAACCTTTTGCA 588
Query 288 GTGCCAACTGCTGGAGCTTTCTATATGCATGATAACAGATTTCAGGAAATT-GATGCCGC 346
||||| ||||||||||||||||||||||||||| |||||||||||| |||| ||||||||
Sbjct 589 GTGCCTACTGCTGGAGCTTTCTATATGCATGATGACAGATTTCAGG-AATTGGATGCCGC 647
Query 347 CTCTAATAGGCGAATGCGTGGTGGTAGGAGGCTCTGGCAATCCAGAGATGAAAGAAAGTG 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 CTCTAATAGGCGAATGCGTGGTGGTAGGAGGCTCTGGCAATCCAGAGATGAAAGAAAGTG 707
Query 407 GGGACATGACAAATACGAGGAAATGAATACACCGGAAA-AGCAATATGATAGGCGGACTT 465
|||||||||||||| |||||||||||||||| | |||| |||||||||||||| ||||||
Sbjct 708 GGGACATGACAAATTCGAGGAAATGAATACA-CAGAAACAGCAATATGATAGGAGGACTT 766
Query 466 CGAGAGGCCGAGGCAGAGGTCGTGGTCAGGGTAGGGGTCAGGATCGTGGACATTCTCGAG 525
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 767 CGAGAGGCCGAGGCAGAGGTCGTGGTCAGGGTAGGGGTCAGGACCGTGGACAGTCTCGGG 826
Query 526 GGAACAATTCTAAAGAATTTACTGGCAATGGACACCAAAATCAGCTTCCTAAGGCTGTCA 585
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 827 GGAACAATTCTAAAGAATTTACTGGCAATGGACACCAAAATCAGTTTCCGAAGGCTGTCA 886
Query 586 CGAGAGGGAGGGGCCCCAGAAGATATGAGGTTGCATTGAGAAATGGGAATCAAGCACCTT 645
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 CGAGAGGGAGGGGGGCCAGAAGATATGAGGTTGCATTGAGAAATGGGAATCAAGCACCTT 946
Query 646 CTGTGCAAACCAAACGGTCCCAAAATTCGTTTGTGAAAGTGTCACACGTTAATTCAGGGC 705
||||||||||||||| |||||||||||||| |||| |||||||||||||| ||| |||||
Sbjct 947 CTGTGCAAACCAAACAGTCCCAAAATTCGTCTGTGGAAGTGTCACACGTTGATTTAGGGC 1006
Query 706 TTCCACCAACAGAAACAGCTAGCATAGAGACCGAAGCCATCCAAGCCAAAAAGAATGTAT 765
|||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||
Sbjct 1007 GTCCACCAACAGAAACAGCTACCTTAGAGACTGAAGCCATCCAAGCCAAAAAGAATGTAT 1066
Query 766 TAGCTTCAAGTTTAAATTCAGCTTCTCCTCCATTTTATCCTTCAGGATCCTCCAATAACT 825
| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1067 TTGCTTCAAGTTTAAATTCAGCTTCTCCTCCATTTTATCCTTCAAGATCCAACAATAACT 1126
Query 826 TGGCACAAAAGGATGTACAAGCTGGCATGGGTAGACTGCACATTAGTGAAAACCCTACTC 885
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||
Sbjct 1127 TGGCACAAAAGGATGTACAAGCTGGCATGGGTAGGCTGCACATTAATGAAAACCCTAATC 1186
Query 886 CGACTGGAAAGAAGTTTGGGAATACAAAATCCAGCTCTTTGTGGGTACCCACTGCTCAAC 945
||||||||||||||||||||||||||||||||||||| ||||||| || | | |
Sbjct 1187 CGACTGGAAAGAAGTTTGGGAATACAAAATCCAGCTCCTTGTGGG----GAC-G--C-A- 1237
Query 946 CTTCTCAGACTACAAGTCATGGTAGAGGTGCACCTCCTCGTGAGCAAGTGCTTTACCAGC 1005
|| ||||||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 1238 CTGCTCAGACTACAAGTCATGGTAGAGGTGTACCTCCTCATGGGCAAGTGCTTTACCAGC 1297
Query 1006 AATCTCCTAATCAAGGTGACAAAGTTTCTCCGCCAATGCAAATCCGGGGAATGCCAAAAG 1065
||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| ||||
Sbjct 1298 AATCTCCTAATCAAGGTGACAAAGTTTCTTCGCCGATGCAAATCCGTGGAATGCCTAAAG 1357
Query 1066 GCACTGACCAAAGCTGTACTCAACTTCCTGGTCAGGCTTTTGATCAACATTCGGCTGTTT 1125
|||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1358 GCACTGACCAGAGCTGTACTCAACTTCCTGGTCAGGTTTTTAATCAACATTCGGCTGTTA 1417
Query 1126 TCAGTTTGCTGCCTTCTTCTCCACCAAAAACCGGATCATCA-AAAAACCAGTATCTTTCT 1184
|||||||||||||||||||||| |||||||||||||||||| |||| || ||||||||||
Sbjct 1418 TCAGTTTGCTGCCTTCTTCTCCTCCAAAAACCGGATCATCAGAAAATCC-GTATCTTTCT 1476
Query 1185 GGTGAAATAGAGTCAGCCGCAGAAACCGGTGCTCTGGTTGCCAAGGGAAAAGGGTCACTC 1244
||||||||||||||||||| |||||| |||||| |||||||||||||||||||||| |||
Sbjct 1477 GGTGAAATAGAGTCAGCCGTAGAAACAGGTGCTTTGGTTGCCAAGGGAAAAGGGTCTCTC 1536
Query 1245 CAGCCTACTGGAAGGGGACCTTTGATGTATGGAGGGACACAGTTTATGGGGCCTGCCGGG 1304
|| |||| |||||||||| |||| |||||||||||||||||||||||||| |||||||||
Sbjct 1537 CAACCTAGTGGAAGGGGATCTTTTATGTATGGAGGGACACAGTTTATGGGCCCTGCCGGG 1596
Query 1305 ATGGCAGCTGGTCATGGCAATCCAAATTTCCCTGCTTTTCTGCCTGTTATGCAATTCAGT 1364
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1597 ATGGCAGCTGGTCACGGCAATCCAAATTTCCCTGCTTTTCTACCTGTTATGCAATTCGGT 1656
Query 1365 GGTCAGCATGGCGGGGTTCCCACCTTTGGAATGGCTCTTCCAGGATATGTCCAACCAGAA 1424
||||||||||| |||||||| || |||||||||||||||||||| ||| |||||||||||
Sbjct 1657 GGTCAGCATGGTGGGGTTCCAACTTTTGGAATGGCTCTTCCAGGTTATTTCCAACCAGAA 1716
Query 1425 CACGGTACCGGAAATCCTGAGATGACATGGCTGCCAATTTTGGCTGGCCCCGGAGCATTA 1484
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1717 CATGGTACCGGAAATCCTGAGATGACATGGCTGCCAATTTTGGCTGGCCCTGGAGCATTA 1776
Query 1485 GGGGGTTCATATTGTCCACCTTATGCTGCCCTTGATGGTTCTTACCAAGCACACAAACCA 1544
|||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||
Sbjct 1777 GGGGGTTCATATTGTCCACCTTATACTGTCCTTGATGGTTCTTACCAAGCAGACAAACCA 1836
Query 1545 GGGTTACCTTCCTCTGCGGGATCCTCCAGCTATGAGAACAGTTCCAATAATCCTAATGAT 1604
||||||||||||||||| ||||| |||||| | |||||||||||||||||||||||||||
Sbjct 1837 GGGTTACCTTCCTCTGCCGGATCGTCCAGCCAAGAGAACAGTTCCAATAATCCTAATGAT 1896
Query 1605 GAAGAGCCCATGGATAGACCTGAGGTTACAAACAATGGGAATTCCCAACGGTCAAATAGC 1664
|||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1897 GAAGAGCCCATGGAGAGACCTGAGGTTACGAACAATGGGAATTCTCAACGGTCAAATAGC 1956
Query 1665 AACCAAAACAAGCAGCCTCGTAGATACTCGGAGATGAGCTTTAGCAAGTGAGTGAAGAAG 1724
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1957 AACCCAAACAAGCAGCCTCGTAGATACTCGGAGATGAGCTTTAGCAAGTGAGTAAAGAAG 2016
Query 1725 AGTGCAAAGGAAG--G-TCGTCTAGTTTGAATAAGTGGAGTGAAAGGAGG-G--TGAGAG 1778
|||| |||||||| | || |||| ||||| ||||||||||||||||||| | ||||||
Sbjct 2017 AGTGGAAAGGAAGAAGGTCATCTAATTTGACTAAGTGGAGTGAAAGGAGGAGGGTGAGAG 2076
Query 1779 AGAAG--CTCCTTAG---CAGCAGGCCCCTGGTGCTTCTCCAAGCTGCCTGATTTAAGGA 1833
||||| |||||||| |||||||||| |||||||||||||| |||| | || | | |
Sbjct 2077 AGAAGAGCTCCTTAGGAGCAGCAGGCCCTTGGTGCTTCTCCAA-CTGC-T--TT-ATGAA 2131
Query 1834 GCAGTTTGGGCTGCTATTGTTG---CCTATTTTGATTAGGAGGTTGTTGTGCAATTAAAA 1890
|| ||||||||||||||| ||| |||||||| |||||||||||||||||||||| |||
Sbjct 2132 GCCGTTTGGGCTGCTATTATTGTTACCTATTTTTATTAGGAGGTTGTTGTGCAATTGAAA 2191
Query 1891 A 1891
|
Sbjct 2192 A 2192
Score = 154 bits (83), Expect = 3e-36
Identities = 126/145 (87%), Gaps = 9/145 (6%)
Strand=Plus/Plus
Query 1 TGATGGCCCCTGTTGGCGTTGAAGAcccccccGACTACGAGAGTGATCCCGACGAATTGA 60
|||||||||||| |||||||||||| | ||||||| ||||||||||||||||| ||||
Sbjct 188 TGATGGCCCCTGATGGCGTTGAAGA---CTCCGACTATGAGAGTGATCCCGACGAGTTGA 244
Query 61 ATCGCTCCTTGGCTACACGGAGGAGAGAAGCCAGCGATGATGAGGACGACCATGAT-A-G 118
| ||||||||||||||||||||||||||||||||||||||||| || || |||| | |
Sbjct 245 ACCGCTCCTTGGCTACACGGAGGAGAGAAGCCAGCGATGATGATGAGGATGATGAAGAAG 304
Query 119 -GGAC--C-ATGATAAGCTGCGAGC 139
|||| | ||||||||||||||||
Sbjct 305 CGGACGACCATGATAAGCTGCGAGC 329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95732439315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5