BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477264
Length=3051
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79950.1 | Symbols: | RAD3-like DNA-binding helicase protei... 4839 0.0
> AT1G79950.1 | Symbols: | RAD3-like DNA-binding helicase protein
| chr1:30073580-30079537 FORWARD LENGTH=3123
Length=3123
Score = 4839 bits (2620), Expect = 0.0
Identities = 2893/3022 (96%), Gaps = 30/3022 (1%)
Strand=Plus/Plus
Query 45 TCTTGTTCGTCTTCTCCGGAGAGG--TT-T--TG----CGGCGGAATCCGAGGCGAAAAT 95
|||| ||||||||||||||||||| || | || ||||||||||||| || ||
Sbjct 78 TCTTCTTCGTCTTCTCCGGAGAGGTTTTGTGGTGTTATCGGCGGAATCCGACCCG--AA- 134
Query 96 AATGCCAAATTACAGCATCAGAGGAATCAATGTTGATTTCCCATTCGAGGCGTACCAGTC 155
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 135 AATGCCAAATTACAGCATCAGAGGAATCAATGTTGAATTCCCATTCGAGGCGTACCAGTC 194
Query 156 TCAGATCATTTACATGGACAGAGTCATCGAGTCTCTTCAAAACAAATGCCATGCGCTTTT 215
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 195 TCAGATCATATACATGGACAGAGTCATCGAGTCTCTTCAAAACAAATGTCATGCGCTTTT 254
Query 216 GGAGAGTCCTACTGGAACTGGGAAAACTCTTTGTCTTCTCTGTGCCACCTTAGCCTGGCG 275
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 GGAGAGTCCTACGGGAACTGGGAAAACTCTTTGTCTTCTCTGTGCCACCTTAGCCTGGCG 314
Query 276 AAAGAGTCTGGGCTCTTTCTCAACCCGTAAGGATCGCAAGAACTGTTCCATTCCTTGGTC 335
|||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||
Sbjct 315 AAAGAGTCTGGGCTCTTTCTCAACCCGTAAGGATCGGAAGAACAGTGCCATTCCTTGGTC 374
Query 336 AGATTCTGACGA-CCTAATGTCACAATCC------------GGAGGAGCTTTTCCTACCA 382
||||| ||||| ||| ||||||||||| |||||||||||||| ||||
Sbjct 375 CGATTCAGACGAGCCT-CTGTCACAATCCGGAGGAGGAGGAGGAGGAGCTTTTCCCACCA 433
Query 383 TTA-TTTATGCGTCCCGGACTCATAGTCAGCTCCGCCAAGTGATCAAAGAATTAAAAAGA 441
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 -TAGTTTATGCGTCCCGGACTCATAGTCAGCTCCGCCAAGTGATCAAAGAATTAAAAAGA 492
Query 442 AGTAGCTACAGGCCTAAGATGGTGGTCCTAGGATCGCGGGAGCAATTATGCGTTAATGAG 501
|||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||
Sbjct 493 AGTAGCTACAGGCCTAAGATGGTGGTGCTTGGATCACGGGAGCAGTTATGCGTTAATGAG 552
Query 502 GAAGTCAACTCACTCCGTGGCAAAGCACTCACAAATGCTTGTCAGTACCTTTGCAAAAAG 561
||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 553 GAAGTCAACTCCCTCCGTGGCAAAGCACTCACTAATGCCTGTCAGTACCTTTGCAAAAAG 612
Query 562 CGCGGTAAACGCCAATGCAACCATTTCAATCGCATTCCAGATTATTTGAAGCATAACACT 621
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 613 CGCGGTAAACGCCAATGCAACCATTTCAATCGCCTTCCAGATTATTTGAAGCATAACCCT 672
Query 622 CATATTGGCGACGAACCACTTGACATTGAGGATTTGGTCAATATTGGAAAAGATTCCGGA 681
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 673 CATATTGGCGACGAACCTGTTGACATTGAGGATTTGGTCAATATTGGAAAAGATTCTGGA 732
Query 682 CCATGCCCGTATTATATCACAAGAGAGCTTCACAAGGACGTGGACATCATATTTGCACCT 741
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 CCATGCCCTTATTATATCACAAGAGAGCTTCACAAGGACGTGGACATCATATTTGCACCT 792
Query 742 TACAACTACTTGATCAGCAATGGCTATAGAAAGTTTTTGAAAGTCAACTGGAATAATAGT 801
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 793 TACAACTACTTGATCAGCAATGGGTATAGAAAGTTTTTGAAAGTCAACTGGACTAATAGT 852
Query 802 GTCCTTATTTTTGATGAAGCGCACAATCTGGAAAGTTTATGCGCAGACTCAGCTTCATTT 861
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 853 GTCCTTATTTTTGATGAAGCGCACAATCTGGAAAGTTTATGCGCAGACTCTGCTTCATTT 912
Query 862 GACCTTCCTTCAGTTCTTCTATCGGCTTGCATTTCTGAAGCACAAGAATGTGTACAACTT 921
||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 913 GACCTTCCTTCTGTTCTTTTATCGGCTTGCATTTCTGAAGCGCAAGAATGTGTACAACTT 972
Query 922 GCGGCAGCAAGAAGGAATTCATTAAATGACGTTTCCATAAACCCTGAGAATTTTGCTATA 981
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 GCGGCAGCAAGAAGGGATTCATTAAATGACGTTTCCATAAACCCTGAGAATTTTGCTATA 1032
Query 982 CTTAAAGGACTGCTTCTTAAGCTGCAGGAACTGATTTCTAAAGTGCCAATTCCAAAAAGG 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1033 CTTAAAGGACTGCTTCTTAAGCTGCAGGAACTGATTTCTAAAGTGCCAATTCCCAAAAGG 1092
Query 1042 GACGAGGGATTTACCAAGCCTGGCCCTTACATATATGAAATGCTTAAAAGCCTTAACATC 1101
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1093 GACGAGGGATTTACCAAGCCTGGGCCTTACATATATGAAATGCTTAAAAGCCTTAACATC 1152
Query 1102 ACTCACGAAACTGCTCCTAAACTCATTGGTACAGTTGAGGAGGCTGCAGTGTTCCTGGAG 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 ACTCACGAAACTGCTCCTAAACTCATTGGTACAGTTGAGGAGGCTGCAGTGTTCCTGGAG 1212
Query 1162 GAGGAGAAACAACGAACAGCGACCAACTCTGGAAGCAAACTAGAAATCATTGCTGACATG 1221
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1213 GAGGAAAAACAACGAACAGCGACCAACGCTGGAAGCAAACTAGAAATCATTGCTGACATG 1272
Query 1222 CTTAAGCTGATCTTTAGAGAAAATGGAAGTAACCATGCAGATGTTTATCGTGTTCATGTA 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 CTTAAGCTGATCTTTAGAGAAAATGGAAGTAACCATGCAGATGTTTATCGTGTTCATGTA 1332
Query 1282 CAAGAGCTGGAGCAAAATTCTACTGATATGATGAAAGGCAGGGTATCAAGAACGCTTAGC 1341
|| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1333 CAGGAGCTGGAGCAAAATTCTACTGATGTGATGAAAGGCAAGGTATCAAGAACGCTTAGC 1392
Query 1342 TGGTGGTGTTTCAGTCCTGGGATTACCATGCTGGACATAGCaaaaaaaGGTGTTGGGTCT 1401
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1393 TGGTGGTGCTTCAGTCCTGGGATTACCATGCTGGACATAGCACAAAAAGGTGTTGGGTCT 1452
Query 1402 ATCATTTTAACATCGGGGACTTTGTCTCCCATGGATTCATTGGCTCAAGAACTAAAACTA 1461
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1453 ATCATTTTAACATCAGGGACCTTGTCTCCCATGGATTCATTGGCTCAAGAACTAAAACTG 1512
Query 1462 GACTTTCCCGTTCGGTTGGAGAATCCCCATGTTATATCTTCAAATCAGCTATGGGCTGGA 1521
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1513 GACTTTCCCATTCGGTTGGAGAATCCCCATGTTATATCCTCAAATCAGCTATGGGCTGGA 1572
Query 1522 GTTGTAAGTACTGGTCCATCAGGGTACGTTCTTAACTCTAGCTACCGCAATCGTGATGTA 1581
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1573 GTTGTAAGTACTGGTCCATCAGGGTACGTTCTTAATTCTAGCTACCGCAATCGTGATGTC 1632
Query 1582 CCAGAGTACAAACAAGAACTTGGGAATGCCATAGTCAACTTTTCTCGAGTCGTGCCAGAA 1641
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1633 CCAGAGTACAAACAAGAACTTGGGAATGCCATAGTTAACTTTTCTCGAGTCGTGCCTGAA 1692
Query 1642 GGACTGCTGATATTTTTCCCTTCCTATTACCTTATGGACTCTTGCATTTCATTTTGGAAA 1701
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1693 GGACTGCTGATATTTTTCCCTTCCTATTACCTTATGGACTCTTGCATTACATTTTGGAAA 1752
Query 1702 AATGGGTGTCACAGGAACTCAATGACAGTATGGGAAAGAATTTGCAAGCTCAAGAAACCT 1761
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1753 AATGGGTGTTACAGAAACTCAATGACAGTATGGGAAAGAATTTGCAAGCTCAAGAAACCT 1812
Query 1762 GTCATTGAACCTAAGGATTCGTCCCTCTTTCCTGCAGCAATGCAGGACTTTTCAGAAAAA 1821
||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 1813 GTCATTGAACCCAAGGATTCCTCCCTCTTTCCTGCAGCAATGCGGGACTTTTCAGAAAAA 1872
Query 1822 TTGCAAGACAGATCGACTTCGGGTGTGGTATTTTTTGCCGTTTGTCGTGGTAAGGTCAGT 1881
|||||||||||| | |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1873 TTGCAAGACAGAGCAACTTCGGGTGTGGTGTTTTTTGCCGTTTGTCGCGGTAAGGTCAGC 1932
Query 1882 GAAGGACTGGATTTTGCTGACGGTGCTGGCAGAGCTGTCGTCATTACTGGGTTACCTTAT 1941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1933 GAAGGACTGGATTTTGCTGACGGTGCTGGCAGAGCTGTCGTCATTACTGGGTTACCTTAT 1992
Query 1942 GCCAGGGTGACAGATCCTAGGG-TAATATTGAAACGAGAGTTTCTGGATGAACAATCACA 2000
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1993 GCCAGGGTGACAGATCCTAGGGTTAA-ATTGAAACGAGAGTTTCTGGATGAACAATCACA 2051
Query 2001 ACTTGCAGATGTCAAGCTTCCAAGATCAACCCTTCTATCTGGAAGCATGTGGTACAGTCA 2060
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2052 ACTTGCAGATGTTAAGCTTCCAAGATCAACCCTACTATCTGGAAGCATGTGGTACAGTCA 2111
Query 2061 AGAAGCCGCACGGGCTGTGAATCAAGCAATTGGACGTGTAATCCGCCATCGCCATGATTA 2120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2112 AGAAGCCGCACGGGCTGTGAATCAAGCAATTGGACGTGTAATCCGCCATCGTCATGATTA 2171
Query 2121 TGGAGCTATCATCTTTTGTGATGACAGATTTGAACAACCGTCCCAGCAATCCAAGATATC 2180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2172 TGGAGCTATCATCTTTTGTGATGACAGATTTGAACAACCATCCCAGCAATCCAAGATATC 2231
Query 2181 ACTTTGGATACGACCTAACGTCAAGTGCTACTCTAGATATGGAGAGGTTATTTCTGACCT 2240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2232 ACTTTGGATACGACCTAACGTCAAGTGCTACTCTAGATATGGAGAGGTTATTTCTGACCT 2291
Query 2241 TGCTCGATTTTTCCGGACTGAAAGATCAAATTTTCCTGCAAGGCTTGTAACAGATCAAGA 2300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2292 TGCTCGATTTTTCCGGACTGAAAGATCAAATTTTCCTGCAAGGCTTGTAACAGAACAAGA 2351
Query 2301 GAACAATATAGTTTCAACATTGGTACCAATGGAATCAACCAAGGATAATCCTACACCAGC 2360
|||||||||||||||||||||| ||||| ||||||||| | |||||||||||||||||||
Sbjct 2352 GAACAATATAGTTTCAACATTGTTACCAGTGGAATCAATCGAGGATAATCCTACACCAGC 2411
Query 2361 CTTTGGTAATAGTAATTTGAAAAACGTTGGGGTTGCGCAGAATGAGTTGAGTAGACTGGA 2420
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 2412 CTTTGGTAATAGTAATTTGAAAAACGTTGGGGTTGCACAAAATGAGTTGAGTAGACTGGA 2471
Query 2421 AGCATTTCCTCCTGCAAATCGGGCTTCACCCTTGGAGCGTGACGGAAATAATGTTAAATG 2480
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2472 AGCGTTTCCTCCTGCAAATCGGGCTTCACCCTTGGAGCGTGACGGAAATAATGTTAAACG 2531
Query 2481 GAAAGGCCTGACCATTCTTAAACATACGGGCAAGATACCTCGCATTGTAAAGGGAGATGT 2540
||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2532 GAATGGTTTGACCATTCTTAAACATACAGGCAAGATACCTCGCATTGTAAAGGGAGATGT 2591
Query 2541 TATGCAGGGTTGTTCTTCACGGAAGGCTAAGTTAGTGGAACTAAGTGATGATGAGGAGAC 2600
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2592 TATGCAGGGTTGTTCTTCACGGAAGGCTAAGTTGGTGGAACTAAGTGATGATGAGGAGAC 2651
Query 2601 TCTGGTAGAGAGGAGATGTGAAGTAGTGGATCTAGAATGCGACAACTGTGAGAAGCAGAC 2660
|| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 2652 TCCGGTAGAGAGGAGATGTGAAGTAGTGGATCTAGAAAGCGACAACTGTGAGACGCAGAC 2711
Query 2661 CTGTGAAACAGAAGTGCTTGCATCAAGCACATGTTTCAACACAATGGGACTaaaaaaaaa 2720
||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2712 CTGTGTAACTGAAGTGCTTGCATCAAGCACATGTTTGAACACAATGGGACTAAAAAAAAA 2771
Query 2721 GCGAAAGGTTCAAGAGAGTCAGGGAAGTGCATCGTCGTCAGTGTTGACAGCGAAAGGAAA 2780
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2772 GCGAAAGGTTCCAGAGAGTCAGGGAAGTGCATCGTCGTCAGTGTTGACAGCGAAAGGGAA 2831
Query 2781 TGGAGGTGGTAATAAAAAGGAAGCAAGTGCATCTGCATTTTTGAGTCAAGTCAAAGAGAA 2840
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2832 TGGAGGTGGTGATAAAAAGGAAGCAAGTGCATCTGCGTTTTTGAGTCAAGTCAAAGAGAA 2891
Query 2841 GCTCAACACAGAAGAATATAAGAAGTTCATTGGATACATGCAAGCATTGAAGAAGAAGGA 2900
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2892 ACTCAACACAGAAGAATATAAGAAGTTCATTGGATACATGCAAGCATTGAAGAAGAAGGA 2951
Query 2901 GATTAAGTTAGCAAACGTGATGGAGTCGATTGTGCAACTGTTCTGTGGAGGAGAGAGGGA 2960
|||||||||||||||||||||| |||| ||||||||||||||||||||| | ||||||||
Sbjct 2952 GATTAAGTTAGCAAACGTGATGCAGTCCATTGTGCAACTGTTCTGTGGAAGTGAGAGGGA 3011
Query 2961 TCATCTTCTCATGGGATTCAAGGACTTTGTGCCAGTAAAGTATCGTCCTGCCTATGAGGA 3020
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 3012 TCATCTTCTAATGGGATTCAAAGACTTTGTGCCAGTAAAGTATCGTCCTGCCTACGAGGA 3071
Query 3021 ATGCATTAAAACGAGAAAAAGA 3042
||||||||||||||||||||||
Sbjct 3072 ATGCATTAAAACGAGAAAAAGA 3093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 151704835632
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5