BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477272
Length=1178
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79910.1 | Symbols: | Regulator of Vps4 activity in the MVB... 1622 0.0
> AT1G79910.1 | Symbols: | Regulator of Vps4 activity in the MVB
pathway protein | chr1:30054884-30057170 FORWARD LENGTH=1471
Length=1471
Score = 1622 bits (878), Expect = 0.0
Identities = 1088/1181 (92%), Gaps = 48/1181 (4%)
Strand=Plus/Plus
Query 1 ttttttttGGAAAGGCAAAATGTTTGATGGGCTGTTCAAACCCAAGTTCTATACGAAATG 60
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 148 TTTTTTTTCGAAAGGCAAAATGTTTGATGGGCTGTTCAAACCCAAGTTTTATACGAAATG 207
Query 61 CAAGTCGTTGGTCAAGATAACGAAGACAAGAGTAGACACGGTGAAGAGGAAGAAAAACTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 CAAGTCGTTGGTCAAGATAACGAAGACAAGAGTAGACACGGTGAAGAGGAAGAAAAACTC 267
Query 121 GGTTTGCAAATATCTCAAGAACGACATTGTCGATCTTCTCAAGAACAGCCTCGATTACAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 GGTTTGCAAATATCTCAAGAACGACATTGTCGATCTTCTCAAGAACAGCCTCGATTACAA 327
Query 181 TGCATATGGCAGG--A-A-GGGCTTATAGAGGAGAAAAGGAGGCTGGCTTGTTATGAGTT 236
||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 328 TGCATATGGCAGGGCAGAAGGGCTTATAGAGGAGAAAAGGAGGCTGGCTTGTTATGAGTT 387
Query 237 TTTGGAGCAATTCTGCATCTGTGTTGCATCCAATGTCTCTCTCTTACAGAAATCCAGCGG 296
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| | |
Sbjct 388 TTTGGAGCAATTCTGCAACTGTGTTGCATCCAATGTCTCTCTATTACAGAAATCCATCCG 447
Query 297 GTGCCCCGATGAGTGTCGCGAGGCCATCTCCTCCCTTGTATATGCAGCGGCTAGAGTCTC 356
|||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 448 GTGCCCTGATGAGTGCCGCGAGGCCATCTCCTCCCTTGTATATGCAGCCGCTAGAGTCTC 507
Query 357 TGAAGTGCCTGAGCTACGCGACCTCAGATCTTTATTTGCTGAGAGATACGGGAACAAACT 416
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 508 TGAAGTCCCTGAGCTACGCGACCTCAGATCTTTATTTGCTGAGAGATACGGAAACACACT 567
Query 417 TGAACAGTTTGTGAATCCTGAGTTTGTAGAGAGATTCAAAGCAGAGCCGCCGTCAAAGGA 476
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 TGATCAGTTTGTGAACCCTGAGTTTGTAGAGAGATTCAAAGCAGAGCCGCCGTCAAAGGA 627
Query 477 AATGAAGGTGGAGCTGCTGCAGGAAATCGCAAGAGAGTACTCCATAAAATGGGATGCCAA 536
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 628 AATGAAAGTGGAGCTGCTGCAGGAAATCGCCAGAGAGTACTCCATAAAATGGGATGCCAA 687
Query 537 GTCTTTAGAGCAGAGATTGTACACACCAGCTCATCATCAT-A---C-----GGAAACTGA 587
|||||||||||||||||||||||||||| ||||||||||| | | |||||||||
Sbjct 688 GTCTTTAGAGCAGAGATTGTACACACCACCTCATCATCATCATGTCCATACGGAAACTGA 747
Query 588 AGAGCCAAAAACAGAGAAGTCCAA--G-GACCCCGAAA---C---G-A---GA-A-GCAG 632
||| ||||||||||||||| |||| | || ||||||| | | | || | ||||
Sbjct 748 AGAACCAAAAACAGAGAAGACCAACAGCGAACCCGAAAAGACCATGGAAAAGAGAAGCAG 807
Query 633 CCTTTGGTTCCATGGCAGAGAAGACTCAATGGATGACAGCAACAAGTCCATAATGAGTAC 692
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 808 CCTTTCGTTCCATGGCAGAGAAGACTCGATGGATGACAGCAACAAGTCCATAATGAGTAC 867
Query 693 AAGCGAAGAAGACTCCATGAGTACAAGCGGGAGTTGTGTGACTGGCCCGGAGGAGGATCC 752
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 868 AAGCGAAGAAGACTCCATGAGTACAAGCGGGAGTTGTATGACTGGCCCGGAGGATGATCC 927
Query 753 TGAAACGAAACCCTTGTACTACAGATTCATGACTCCTGCTGCGCCATACACCAAACCCAA 812
||||| |||||| || ||||||||||||||||||||||| || | ||||||||||||||
Sbjct 928 TGAAATGAAACCTTTCTACTACAGATTCATGACTCCTGC-GC-CT-TACACCAAACCCAA 984
Query 813 AATCGAAAAACAGGAAAGCCTTCCGGAGAAGATGACCAAATCTGATCTCATGGACACCGA 872
||||||||||||||||| ||||||||||||||||| | |||| ||||||||||||||||
Sbjct 985 GATCGAAAAACAGGAAAGTCTTCCGGAGAAGATGACTACATCTCATCTCATGGACACCGA 1044
Query 873 ATCGCCGA-GGGCCGGAAAAGCAAAGCCGAGATCAGTGAGACGAAGATTCGCAAACCCGA 931
|||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1045 ATCGCCGACGGGC-GGAAAACCAAAGCCGAGATCAGTGAGACGAAGATTCGCAAACCCG- 1102
Query 932 CC-CCTGAAGCGGAA--GG--GG--AAGCATTGAAACAGGAGAGTA-AGAAG-AAGAACA 982
|| |||||||||||| || || ||||||||||| | | |||| ||| | |||||||
Sbjct 1103 CCACCTGAAGCGGAAACGGAAGGGGAAGCATTGAAATTGAA-AGTAGAGA-GTAAGAACA 1160
Query 983 TAATGAGAACATCAGATTCGATGGGGAAAGCAAGCGGAGGAGAGGGGTTTAGGAGAATGA 1042
| |||||| ||||||| |||||||||||||||||||||| || || |||||||||||||
Sbjct 1161 TGATGAGAGCATCAGAGTCGATGGGGAAAGCAAGCGGAG-AG-GGT-TTTAGGAGAATGA 1217
Query 1043 GTCGTCGAACAGCCTCGTGGCAGCATAAGCCCTCCAGCTGCGTCCCCGATTTTGATGAGG 1102
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1218 GTCGTCGAACAGCCTCGTGGCAGCATAAGCCCTCCTCCTGCGTCCCCGATTTTGATGAGG 1277
Query 1103 TCGCCGCTCGCGTCGATGCCCTCTCACGAAATTGATTTTCT 1143
||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1278 TCGCCGCTCGCGTCGATGCCCTCTCCCGATATTGATTTTCT 1318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57831027840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5