BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477275
Length=2607
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79890.1 | Symbols: | RAD3-like DNA-binding helicase protei... 3629 0.0
AT1G09995.1 | Symbols: | DNA repair DEAD helicase RAD3/XP-D su... 224 3e-57
> AT1G79890.1 | Symbols: | RAD3-like DNA-binding helicase protein
| chr1:30048655-30052203 FORWARD LENGTH=2649
Length=2649
Score = 3629 bits (1965), Expect = 0.0
Identities = 2164/2259 (96%), Gaps = 17/2259 (1%)
Strand=Plus/Plus
Query 365 ACGATCAAGAATTTTTGCTGGAAGAATACCAAAGCCAAGATGAATCATCCCCGGGCGGAG 424
||||||||||||||||| |||| |||||| ||||||||||||||||||| ||||||||||
Sbjct 392 ACGATCAAGAATTTTTGTTGGATGAATACGAAAGCCAAGATGAATCATCTCCGGGCGGAG 451
Query 425 GCAACTCTAAGAGAAAACCTGCCCGAGCTTTTGAC---ACTTCATC-----ATCA-GAGG 475
|||||||||| |||||||||||||||| ||||||| | |||||| || | || |
Sbjct 452 GCAACTCTAAAAGAAAACCTGCCCGAGGTTTTGACAGTAGTTCATCAGAGGATGAGGAAG 511
Query 476 ATGAGGATGACTGCTCCGATGACGAAC-A--ATGCTTCAAGGTTTTCTTTTGCAGCCGCA 532
||||| |||||||||| |||||||||| | | |||||||||||||||||||||||||||
Sbjct 512 ATGAGAATGACTGCTCGGATGACGAACAAGGAGGCTTCAAGGTTTTCTTTTGCAGCCGCA 571
Query 533 CACATTCACAGCTTTCCCAGTTTGTCAAGGAGTTGAGGAAGACTGTGTTTTCCTCAAAAC 592
||||||||||||||||||||||||||||||||||||| |||||||| ||| || |||||
Sbjct 572 CACATTCACAGCTTTCCCAGTTTGTCAAGGAGTTGAGAAAGACTGTCTTTGCCAAAAAAC 631
Query 593 TCAATGTTGTCTGTCTCGGCTCCCGAAAGAACTTGTGCATTAACGAAGATGTTCTTAAGC 652
|||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 632 TCAAAGTTGTGTGTCTCGGCTCCCGAAAGAACTTGTGCATAAACGAAGATGTTCTTAAGC 691
Query 653 TTGCGAATGTGACCCGAATCAACGAGAGCTGCTTGGACTTGCAAAAGAAGAAGAAATCTC 712
||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 692 TTGGGAATGTGACCCGAATCAACGAGAGGTGCTTGGACTTGCAAAAGAAGAAGATATCTC 751
Query 713 AAGTCTCTAAAAAGAAGAATTTAGGTGCAAATGTAAGAATAGGACGAACCAAAGCTTCTT 772
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 752 AAGTCTCTAAAAAGAAGAATTTAGGTGCAAATGTAAGAATAGTACGAACCAAAGCTTCTT 811
Query 773 GCGGATGCCCACTGCTTAGAAAACATAAACTACAGAGAGAATTCAAGGCTGAGAGTTTTC 832
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 GCAGATGCCCAATGCTTAGAAAACATAAACTACAGAGAGAATTCAAGGCTGAGAGTTTTC 871
Query 833 AACAAGAAGCCATGGACATTGAGGATCTTGTTCAGCTTGGACGACAAATGAGAACTTGTC 892
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 872 AACAAGAAGCCATGGACATTGAGGATCTTGTTCAGCTTGGACGAGAGATGAGAACTTGTC 931
Query 893 CATACTACGGTTCTAGAAGAATGGCCCCCGCAGCTGATCTTGTTATTCTTCCATATCAGT 952
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 932 CATACTACGGTTCTAGAAGAATGGCCCCGGCAGCTGATCTTGTTATTCTTCCATATCAAT 991
Query 953 CTCTTCTATCAAAGTCCTCACGAGAATCTCTTGGCCTAAGCTTGAAAAACAGTGTTGTTA 1012
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 992 CTCTTCTATCAAAGTCGTCACGAGAATCTCTTGGCCTAAGCTTGAAAAATAGTGTTGTTA 1051
Query 1013 TCATAGACGAGGCTCACAATTTGGCTGACATTCTTCTCAGTATGCACGATGCAAAAATAA 1072
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1052 TCATAGACGAGGCTCACAATTTGGCTGACACTCTTCTCAGTATGCACGATGCAAAACTAA 1111
Query 1073 CACTGTCACAGTTGGAGGATATACAGTGCAGTATAGAGAGTTATCTGGGAAGATTCCAGA 1132
|| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1112 CAGTGTCACAGTTGGAGGATATACATTGCAGCATAGAGAGTTATCTGGGAAGATTCCAGA 1171
Query 1133 ATCTCTTGGGAGCTGGAAACCGGAGATATATCCAAATTATGTTGATTCTTACCCGAGCTC 1192
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1172 ATCTCTTGGGAGCTGGAAACAGGAGATATATCCAAATTATGTTGATTCTTACCCGAGCTT 1231
Query 1193 TCCTCAAACCTCTTGCTAGTGATTGGAATCTGAACAGCGTAAATGTTGGGCTTGATACTG 1252
||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||
Sbjct 1232 TCCTCAAACCTCTTGCTAGTGATAGGAATCTGAGTAGCGTAAATGTTGGTCTTGATACTG 1291
Query 1253 GAAACCCCTCGAAAAGCAAACCTTGTGGTGCTTGTTCGATGGCAATAAATGACTTTTTAT 1312
||||||||| |||||||| ||||||||||||||||| ||||||||| |||||||||| |
Sbjct 1292 AAAACCCCTCTAAAAGCAAGCCTTGTGGTGCTTGTTCAATGGCAATATATGACTTTTTGT 1351
Query 1313 TTTCTCTGAATATAGACAACATCAATTTGGTCAAATTACTCGCCTATATAAAGGAAAGCA 1372
||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 1352 TTTCTCTCAATATAGACAATATAAATTTGGTCAAGTTACTCGCCTATATAAAGGAAAGCA 1411
Query 1373 ATATCATTCATAAGGTCAGTGGATATGGAGAGAGAGT---TGCTATGTTGCAGAAAGATC 1429
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1412 ATATCATTCATAAGGTCAGTGGATATGGAGAGAGAGTCGCTGCTATGTTGCAGAAAGATC 1471
Query 1430 CAGTGGCTCATGAGGAAATGAGCAAGTTAACAAGTTTTAGAGCGTTTTCTGATATGTTGG 1489
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472 CAGTGGCTCATGAAGAAATGAGCAAGTTAACAAGTTTTAGAGCGTTTTCTGATATGTTGG 1531
Query 1490 TGGCGCTTACTAATAACAATGGTGATGGGCGGATAATAATCTCAAGGACGAGTTCGTCTG 1549
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 TGGCGCTCACTAATAACAATGGTGATGGGCGGATAATAATCTCAAGGACGAGTTCGTCTA 1591
Query 1550 CCTCTGGCCAACAAGGAGGGTACATCAAATATGTCATGCTCACTGGAGCGAAATTATTTT 1609
||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1592 CCTCTGGCCAACATGGAGGGTACATTAAATATGTCATGCTCACTGGAGCGAAGTTATTTT 1651
Query 1610 CGGAGGTGGTGGATGAAGCGCATGCTGTCATATTGGCCGGTGGGACTCTTCAACCTATAG 1669
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1652 CAGAGGTGGTGGATGAAGCGCATGCTGTCATATTGGCCGGTGGGACTCTTCAACCTATAG 1711
Query 1670 AAGAGACAAGGGAACGACTCTTTCCATGGCTACCATCAGATCAGCTGCAGTTCTTCTCAT 1729
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1712 AAGAGACAAGGGAACGACTCTTTCCATGGCTACCATCAAATCAGCTGCAGTTCTTCTCAT 1771
Query 1730 GTAGTCACATTGTTCCTTCTGAGAGCATAATGCCAATTGCAGTTTCACATGGTCCTTCTG 1789
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1772 GTAGTCACATTGTTCCTCCTGAGAGCATAATGCCAATTGCAGTTTCACATGGTCCTTCTG 1831
Query 1790 GTCAGTCTTTTGACTTTAGCCACAGTTCAAGAGGCTCAACAGGAATGATACAGGAGTTAG 1849
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1832 GTCAGTCTTTTGACTTTAGCCACAGTTCAAGAAGCTCAATAGGAATGATACAGGAGTTAG 1891
Query 1850 GACTCTTAATGAGCAACCTGGTGGCAGTGGTTCCTGAAGGAGTTATCGTCTTCTTCTCCT 1909
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1892 GACTCTTAATGAGCAACCTTGTGGCAGTGGTTCCTGAAGGAATTATCGTCTTCTTCTCCT 1951
Query 1910 CCTTTGAGTATGAAACACAGGTGCACACAGCGTGGAGTAACTCAGGGATACTCAGAAGAA 1969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1952 CCTTTGAGTATGAAACACAGGTGCACACAGCGTGGAGTAACTCAGGGATACTCAGAAGAA 2011
Query 1970 TAATGAAGAAGAAGCGTGTGTTCAGAGAACCCA-GAAGAAACACTGAAGTAGAAGCTGTC 2028
|| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 2012 TAGTGAAGAAGAAGCGTGTGTTCAGAGAACCCAGGAA-AAACACTGAAGTAGAAGCTGTT 2070
Query 2029 CTCAGAGATTACAAGGAAGCAATAGAAAGCGAAAGAGGGGCAATAATGCTAGCTGTGGTT 2088
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2071 CTCAGAGATTACAAGGAAGCGATAGAAAGCGAAAGAGGGGCAATAATGCTAGCTGTGGTT 2130
Query 2089 GGTGGGAAGGTGTCAGAAGGAATCAACTTCAGCGACAGCATGTGTCGGTGTGTTGTGATG 2148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2131 GGTGGGAAGGTGTCAGAAGGAATCAACTTCAGCGACAGCATGTGTCGGTGTGTTGTGATG 2190
Query 2149 GTTGGTCTGCCGTATCCCAGCCCGTCTGACATTGAGTTGTTAGAGAGAATAAAGCATATA 2208
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2191 GTTGGTTTGCCGTATCCCAGCCCGTCTGACATAGAGTTGTTAGAGAGAATAAAGCATATA 2250
Query 2209 GAAGGTCTTGGAGATTCAGATTCCGTAAAACCTTCTGTGACTTTGGTTGATGATTCTTAC 2268
||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2251 GAAGGTCGTGCAGATTCAGATTCCATAAAACCTTCTGTGACTTTGGTTGATGATTCTTAC 2310
Query 2269 TACAGTGGAGATGTTCAAGCAGGATTTGGCGTGTTAAAGAGCTGCAAACGGAGAGGAAAA 2328
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2311 TACAGTGGAGATGTTCAAGCAGGATTTGGCGTGTTAAAGAGCTGCAAACGGAGAGGGAAA 2370
Query 2329 GAATACTATGAAAATCTGTGTATGAAAGCGGTTAACCAATCAATCGGTAGGGCAATCAGA 2388
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2371 GAATACTATGAAAATCTGTGTATGAAAGCAGTTAACCAATCAATCGGTAGGGCAATCAGA 2430
Query 2389 CACGAAAAGGACTATGCATCCATTTTACTGGTAGATGCTCGATATTCTAATGATCCATCC 2448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2431 CACGAAAAGGACTATGCATCCATTTTACTGGTAGATGCTCGATATTCTAATGATCCATCC 2490
Query 2449 AAAAGAACATCTCATTCTCATCCATCCAACAAGCTCCCAAAGTGGATCAAAGATTGTCTT 2508
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2491 AAAAGAACATCTCATTCTCATCCATCCAACAAGCTCCCAAAGTGGATCAAAGATCGTCTT 2550
Query 2509 ATTTATTCCACCAAAGGCTATGGAGATGTTCACAGACTGTTGCACCAATTCTTTAAACAT 2568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2551 ATTTATTCCACCAAAGGCTATGGAGATGTTCACAGACTGTTGCACCAATTCTTTAAACAT 2610
Query 2569 AAAAATGTTGAAAATTCATCCGAAACCAATCAGCACTAG 2607
||||||||||||||||||||||||||||||||||| |||
Sbjct 2611 AAAAATGTTGAAAATTCATCCGAAACCAATCAGCATTAG 2649
Score = 414 bits (224), Expect = 2e-114
Identities = 280/306 (92%), Gaps = 8/306 (3%)
Strand=Plus/Plus
Query 1 ATGACGGAGAAACGAGAGTTCCCGGCGTTTCCATACAAGCCGTACTCGATCCAAATCGAT 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGACGGAGATACGAGAGTTCCCGGCGTTTCCATACAAGCCGTACTCGATCCAGATCGAT 60
Query 61 TTCATGAATGCGCTCTATCAGTTTCTCGACAAAGGAGGCGTCTCCATGCTCGAAAGCCCT 120
|||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 61 TTCATGAATGCGCTCTATCAATTTCTCGATAAGGGAGGCGTCTCCATGCTCGAAAGCCCC 120
Query 121 ACCGGGACTGGAAAATCTCTAAGCATTATCTGCAGTGCTCTCCAGTGGCTGATTGACCGC 180
|| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 121 ACTGGGACTGGAAAATCTCTAAGCATTATCTGCAGTGCTCTCCAGTGGCTTACTGACCGC 180
Query 181 AAGGAGAAACGAAACTCAGAAT---C--A-GAATCCCACAAGGTTGATGGCAACGATGAT 234
||||||||||||||||||| || | | |||||||| ||||||||||| |||||||||
Sbjct 181 AAGGAGAAACGAAACTCAGGATTGACCGAAGAATCCCATAAGGTTGATGGAAACGATGAT 240
Query 235 GAGGACGAGCCCGATTGGATGCG-AACTTTTACTCCCAACGAAGAAGATAGAGCCAGTGA 293
||||||||||||||||||||| | || |||||||| |||||||| |||| |||||| ||
Sbjct 241 GAGGACGAGCCCGATTGGATGAGGAA-TTTTACTCTCAACGAAGCAGATGGAGCCAATGG 299
Query 294 TGACAA 299
||||||
Sbjct 300 TGACAA 305
> AT1G09995.1 | Symbols: | DNA repair DEAD helicase RAD3/XP-D
subfamily protein | chr1:3262265-3263612 REVERSE LENGTH=724
Length=724
Score = 224 bits (121), Expect = 3e-57
Identities = 137/145 (94%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 1082 AGTTGGAGGATATACAGTGCAGTATAGAGAGTTATCTGGGAAGATTCCAGAATCTCTTGG 1141
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 261 AGTTGGAGGATATACACTGCAGCATAGAGAGTTATCTGGGAAGATTCCAGAATCTCTTGA 320
Query 1142 GAGCTGGAAACCGGAGATATATCCAAATTATGTTGATTCTTACCCGAGCTCTCCTCAAAC 1201
||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 321 GAGCTGGAAACATGAGATATATCCAAATTATGTTGATTCTCACCCGAGCTTTCCTCAAAC 380
Query 1202 CTCTTGCTAGTGATTGGAATCTGAA 1226
|||||||||||||| ||||||||||
Sbjct 381 CTCTTGCTAGTGATAGGAATCTGAA 405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129430712940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5