BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477277
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79880.1 | Symbols: | RNA recognition motif (RRM)-containin... 1816 0.0
> AT1G79880.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:30046028-30048378 REVERSE LENGTH=1436
Length=1436
Score = 1816 bits (983), Expect = 0.0
Identities = 1261/1388 (91%), Gaps = 47/1388 (3%)
Strand=Plus/Plus
Query 23 CCTCCTTCGACGAAGAAACCGCCAAGAAGTTGCTTACCCAGGTGGAGTTCTACTTCAGTG 82
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 50 CCTCCTTCAACGAAGAAACCGCCAAGAAGTTGCTTACCCAGGTTGAGTTCTACTTCAGTG 109
Query 83 ACAGTAATCTACCCACTGACGGATTTCTCAACAGGGAAGTCACCAAGAGCAAAGATGGTC 142
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 110 ACAGTAATCTACCCACAGACGGATTTCTCAACAGGGAAGTCACCAAGAGCAAAGATGGCC 169
Query 143 TCGTTAGTTTGCCTCTGGTTTGTTCCTTCTCTCGTGTGAGGAACCTCCTTGGCCTCGGTA 202
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 170 TGGTTAGTTTGCCTCTGGTTTGTTCCTTCTCTCGTATGAGGAACCTCCTTGGCCTCGGTA 229
Query 203 ACATCAATAGAGAAGACTTCCCTCCGAGTATCGTGGACCAAGTCGCTAATCTCTTGCGCA 262
||||||||||||||||| |||||||||| || ||||| |||| ||||||||||||||||
Sbjct 230 ACATCAATAGAGAAGACATCCCTCCGAGGATTGTGGAGGAAGTTGCTAATCTCTTGCGCA 289
Query 263 CCTCTGATTTTCTTAAAGTTTCCAACAATGGACAAAGGATTGGTAGAGGATCAAAACTCT 322
||||||||||||||||||||||||| |||||||||||||| ||||||||| | |||||||
Sbjct 290 CCTCTGATTTTCTTAAAGTTTCCAATAATGGACAAAGGATCGGTAGAGGAACTAAACTCT 349
Query 323 CCAAACCGGAAAAGGTGCTTGAACAAGTCCACAGAAGAACCCTTGCGGCTTCACCTTTTG 382
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 CCAAACCGGAAGAGGTGCTTGAACAAGTCCACAGAAGAACCCTTGCGGCTTCACCTTTTG 409
Query 383 AGTACAACACTAAGATGGAGGATGTCGCATCTTTCTTCTCCCAATATGCCAAGGTGAACA 442
|||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 410 AGTACAGCATTAAGATGGAGGATGTCTCATCTTTCTTCTCCCAATATGCCAAGGTGAACA 469
Query 443 GTGTGAGGCTACCTCACCA-CATCGCAGATAAGCGACGCTTTTGTGGCACTGCCTTGGTT 501
||||||| ||||||| ||| |||||| |||||||||||||||||||||||||| ||||||
Sbjct 470 GTGTGAGACTACCTC-CCAACATCGCTGATAAGCGACGCTTTTGTGGCACTGCGTTGGTT 528
Query 502 GAGTTCTCCTCTGAACAAGACACTGAACATATTTTGAGCCAGAGCTTGGTCTATGCAGGC 561
|| ||||||||||||||||||||| || |||||||||| |||||||||||||||||||||
Sbjct 529 GAATTCTCCTCTGAACAAGACACTCAAGATATTTTGAGGCAGAGCTTGGTCTATGCAGGC 588
Query 562 GCTGACTTACTATTAATACCAAAGAGTGATTTTGACTGTCAAAGAGAGAATATGATTAAG 621
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 589 GCTGACTTAGTATTAATACCAAAGAGTGATTTTGACTGTCAAAGAGAGAATATGATCAAG 648
Query 622 CAACTCGGAAAATCAGGGTCAATTCATAGAGACAACGAATTCCGCAGAGGACAGCTTGTC 681
|||||||||||||||| ||| || ||||||||||||||||||||| |||||
Sbjct 649 CAACTCGGAAAATCAGAGTCC---CA------CAACGAATTCCGCAGAGGACAAATTGTC 699
Query 682 AAATTTACATTGAAATGGATTGCCAGTGGGgaaaaggtaacaaacaaagaaaaaaccagg 741
|||||| ||||||||||||| ||||||| ||||| |||||||||||||||||| ||||
Sbjct 700 AAATTTGCATTGAAATGGATAGCCAGTGAAGAAAAAGTAACAAACAAAGAAAAACCCAGC 759
Query 742 gctctgaaaaagaaaatcaaagATAAGGAGGCAGGCATTGCTGAGAGATTGGAAG-GAAA 800
||||||||||| ||||| ||||| ||||| | | | | |||| | || | |
Sbjct 760 GCTCTGAAAAATAAAATTAAAGAGAAGGAAG-ATA-A--G--GAGACA--GGCATTGC-- 809
Query 801 TGATAGAGTCAAGGAAAGTGGAGATTCACAGGCAGATAACTCATGTGCTAGCTTGTGCAA 860
|||||||| ||||||| | | || |||||||||||||||||||||||||||
Sbjct 810 TGATAGAGAGAAGGAAA----A--T-----GG-AGATAACTCATGTGCTAGCTTGTGCAA 857
Query 861 GGAGAAAATCGACAACGCTGATCAACTTGTGGTTCCCCCTTGGAACAACAGTGATTCTGT 920
||| || | || ||||||||||||||||||||| |||||||||||| |||||||
Sbjct 858 GGACAA---C-AC-----TGATCAACTTGTGGTTCCCCCATGGAACAACAGTAATTCTGT 908
Query 921 GGGCTCTGAGGTTCTCAAGGATCTTTTTCAAAGATTTGGCAGCGTTAAACACATAGAATA 980
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 909 CAGCTCTGAGGTTCTCAAGGATCTTTTTCAAAGATTTGGCAGCGTTGAACACATAGAATA 968
Query 981 CTCTGGTGGATTGGATTCGGGTTACGTTTGGTTCATAGATTCGGAAACAGCAATGAAAGC 1040
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 969 CTCTGGTGGATTGGATTCGGGTTACGTTTGGTTCACAGATTCAGAAACAGCAATGAAAGC 1028
Query 1041 CCGTGCAGCTGTGGAGTTTGTTGGAGGTTTAGTTGTGAAGAATAACTTCTTAGTAGCCTT 1100
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1029 CCGTGCAGCTGTGGAGTTTGTTGGAGGTTTAGTTGTGAAGAATAACTTCTCAGTAGCCTT 1088
Query 1101 AGAAGCAATTAATGGGGAGATGGAGAGAGAGTTGTGGAAAAGACTATCATCAGCTGAGCT 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 AGAAGCAATTAATGGGGAGATGGAGAGAGAGTTGTGGAAAAGACTATCATCAGCTGAGCT 1148
Query 1161 AGAAGGAGGAGGGAAAGGTGGTCACAAAAAGGAAAAAGGCACAGATGAGTGTTTTGAAAC 1220
|||||||| | |||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1149 GGAAGGAGG-G--AAAGAAGGTCACAAAAAGGAAAAAGGCAAAGATGAGTGTTTTGAAAA 1205
Query 1221 CATGCAACCGACCAAGAAGGCTCGAAAGGAGCCCTAATTAAAGCTTTGGGTTTTGTGTTA 1280
| ||||||| ||||||||||| ||||||||||||||||||||| |||||||||||| |||
Sbjct 1206 CGTGCAACCTACCAAGAAGGCCCGAAAGGAGCCCTAATTAAAGTTTTGGGTTTTGTTTTA 1265
Query 1281 TGTCATACTCTTCTCTAC-TTTTTAGAGGTTCAGCAGATTCTCAACAAAATAGATATTGC 1339
|||||| ||||||||||| ||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1266 TGTCATCCTCTTCTCTACGTTTTTTTAGGTTCAGCTGATTCTCAACAAAATAGATATTGC 1325
Query 1340 TTCACTTCACTGACATCTATAAGTGGTTTGGTAAACGTTTCTTGGTCTGGGATGGTTAAT 1399
||||||| |||||||||||| ||| |||| |||||||||| |||||||||||||||||||
Sbjct 1326 TTCACTTGACTGACATCTATGAGTAGTTTTGTAAACGTTTTTTGGTCTGGGATGGTTAAT 1385
Query 1400 GACTTGAC 1407
||||||||
Sbjct 1386 GACTTGAC 1393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69326952645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5