BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477279
Length=967
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79870.1 | Symbols: | D-isomer specific 2-hydroxyacid dehyd... 1563 0.0
> AT1G79870.1 | Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase
family protein | chr1:30044746-30046027 FORWARD LENGTH=1166
Length=1166
Score = 1563 bits (846), Expect = 0.0
Identities = 929/969 (96%), Gaps = 5/969 (1%)
Strand=Plus/Plus
Query 1 ATGGAATCAATCGGAGTCCTTATGATGTGCCCCATGTCCTCCTACCTCGAGAACGAGCTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 49 ATGGAATCAATCGGAGTCCTTATGATGTGCCCCATGTCCTCCTACCTCGAGAACGAGCTT 108
Query 61 GAGAAGCGCTTCAACCTTCTTCGCTTCTGGACTTGTCCGGAGAAATCCG-CCTTCCTAGA 119
|||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||
Sbjct 109 GAGAAGCGCTTCAACCTTCTTCGCTTCTGGACTTCTCCGGAGAAATCCGTCCT-CCTAGA 167
Query 120 AACTCATCGGAACTCCATCCGCGCCGTCGTTGGGAATGCTTCTGCCGGCGCCGATGCTCA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 AACTCATCGGAACTCCATCCGCGCCGTCGTTGGGAATGCTTCTGCCGGCGCCGATGCTCA 227
Query 180 GCTCATCAACGATCTGCCCAAGCTTGAGATCGTCTCCAGCTTCAGCGTCGGGCTCGACAA 239
|||||||| |||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 228 GCTCATCAGCGATCTGCCCAACCTTGAGATTGTATCCAGCTTCAGCGTCGGGCTCGACAA 287
Query 240 GATCGATTTGGGGAAATGCAAGGAAAAAGGGATCCGCGTCACCAACACCCCCGACGTTCT 299
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 288 GATCGATTTGGGGAAATGCAAAGAAAAAGGGATCCGCGTCACCAACACCCCCGACGTTCT 347
Query 300 CACCGAAGACGTCGCAGATCTCGCGATCGGGCTTATCCTCGCTCTCCTTCGAAGGCTGTG 359
|||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct 348 CACCGAAGACGTCGCAGATCTCGCCATCGGGCTTATCCTGGCTCTCCTTCGACGGCTGTG 407
Query 360 TGAGTGCGATCGCTATGTCAGGAGCGGAAAATGGAAGCAAGGTGACTTCCAACTCACTAC 419
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 408 TGAGTGCGATCGCTATGTAAGGAGCGGAAAATGGAAGCAAGGTGAATTCCAACTCACTAC 467
Query 420 CAAGTTTAGTGGAAAATCCGTGGGCATCATTGGCCTAGGTAGAATTGGGACTGCCATCGC 479
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 468 CAAGTTTAGTGGAAAATCCGTGGGGATCATTGGTCTAGGTAGAATTGGGACTGCCATCGC 527
Query 480 AAAGAGGGCTCAAGCCTTTAGCTGCCCAATCAATTACTACTCAAGAACCGTTAAGCCTGA 539
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 528 AAAGAGGGCTGAAGCCTTTAGCTGCCCAATCAATTACTACTCAAGAACCATTAAGCCTGA 587
Query 540 TGT-GCCCTACAAGTATTATCCAACGGTGGTTGACCTTGCTCAAAACTCAGACATCCTCG 598
||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 588 TGTCGCC-TACAAGTATTATCCGACGGTGGTTGACCTTGCTCAAAACTCAGACATCCTCG 646
Query 599 TTGTGGCATGCCCCTTGACCGACCAGACCAGACACATTGTGGACCGGCAGGTCATGGATG 658
| || |||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 647 TCGTCGCATGCCCGTTGACCGAGCAGACCAGACACATTGTGGACCGGCAGGTCATGGATG 706
Query 659 CATTAGGACCTAAGGGTGTGCTCATAAACATTGGCCGTGGACCACATGTTGATGAGCAAG 718
|||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 707 CATTAGGAGCTAAGGGCGTCCTCATAAACATTGGCCGTGGACCACATGTTGATGAGCAAG 766
Query 719 AGCTTGTCAAAGCTCTAACAGAAGGACGCCTAGGTGGGGCTGCGCTCGATGTGTTTGAGC 778
||||| | ||||||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 767 AGCTTATTAAAGCTCTAACAGAAGGCCGCCTAGGTGGGGCTGCCCTTGATGTGTTTGAGC 826
Query 779 ATGAGCCTCACGTGCCCGAGGAGCTATTTGGCCTTGAGAATGTGGTTCTCCTGCCTCACG 838
| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 827 AGGAGCCTCACGTGCCCGAGGAGCTCTTTGGCCTTGAGAATGTAGTTCTCCTCCCTCACG 886
Query 839 TTGGGAGTGGCACTGTGGAAACACGGAATGCCATGGCCGATCTTGTGGTGGGTAACTTGG 898
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 887 TTGGGAGTGGCACTGTGGAAACACGGAATGCCATGGCCGATCTTGTCGTGGGTAACTTGG 946
Query 899 AAGCACACTTTTCTGGGAAATCACTTCTGACTCCGGTCGTCTGAGTGATGATGACACATT 958
|||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 947 AAGCGCACTTTTCTGGGAAATCACTTCTGACTCCGGTCGTCTGAGTCATG-TGACACATT 1005
Query 959 TGGGATTTG 967
|||||||||
Sbjct 1006 TGGGATTTG 1014
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47320566474
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5