BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477280
Length=1647
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79860.1 | Symbols: ATROPGEF12, ROPGEF12, MEE64 | RHO guanyl... 2608 0.0
> AT1G79860.1 | Symbols: ATROPGEF12, ROPGEF12, MEE64 | RHO guanyl-nucleotide
exchange factor 12 | chr1:30042092-30044175 REVERSE
LENGTH=1711
Length=1711
Score = 2608 bits (1412), Expect = 0.0
Identities = 1560/1632 (96%), Gaps = 8/1632 (0%)
Strand=Plus/Plus
Query 1 TCTCAAGAGAGGCCCTTTTGAT-C-ctctctatctctctctctcctctctaattctctct 58
||||||||||||||| |||||| | |||||| |||||||||||||||||||||||||| |
Sbjct 5 TCTCAAGAGAGGCCCATTTGATCCTCTCTCTTTCTCTCTCTCTCCTCTCTAATTCTCTAT 64
Query 59 TGCCATCAAGAAACCAGGAATGGTTCGTGCCTCGGAACAAGAACAGGAAAGCTATAGGAG 118
||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 65 TGCCATCAAGAGACCAGGAATGGTTCGTGCTTCGGAACAAGAACAGGAAACCTATAGGAG 124
Query 119 CAGGCTCTTCAATTTCAAATGGAGGAACAACGACAACAATAGTGCTACGAGACACAACAA 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 CAGGCTCTTCAATTTCAAATGGAGGAACAACGACAACAATAGTGCTACGAGACACAACAA 184
Query 179 GAGTCTCAGCGTCGAGACCGGTTTAGATGAGGCTGCCACCGGATCTCATGGCGCTGAACC 238
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 185 GAGTCTCAGCGTCGAGACCGGTTTAGATGAGGCTGCCACCGGATCCCATGACGCTGAACC 244
Query 239 GTTGACCATAATTCATCCTAGTCAGGGTCCCCCACTTTCAAGATCAGCTGCGGATGAAGC 298
|||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 245 ATTGACCATTATTCATCCTAGTCAGGGTCCACCACTTTCAAGATCGGCTGCGGATGAAGC 304
Query 299 AG-CACTGGCCGCCCTTGCCGCCGCACAGGCTAGAGAAAAGCAGCTTTTGGCAGACATGG 357
|| | || |||||||| |||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 305 AGTC-CTCGCCGCCCTCGCCGCCTCACAGGCTAGAGAAAGGCAGCTTTTGGCAGACATGG 363
Query 358 AGCAGATGAAAGAGCGCTTCTCCAAGCTGTTGCTGGGAGAGGACAATTCCGGTGGAGGCA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 AGCAGATGAAAGAGCGCTTCTCCAAGCTGTTGCTGGGAGAGGACAATTCCGGTGGAGGCA 423
Query 418 AAGGAGTATCATCTGCTCTCGCCCTTTCAAACGCAATCACAAACCTTGCAGCTTCCGTGT 477
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 AAGGAGTATCCTCTGCTCTCGCCCTTTCAAACGCAATCACAAACCTTGCAGCTTCCGTGT 483
Query 478 TCGGAGAGCAACGTCGCTTGGAGCCAATGCCTGCAGAGAGGAGAGCCAGATGGAGAAAAG 537
||||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 484 TCGGAGAGCAACGGCGCTTGGAGCCAATGCCTGCAGAAAGAAGAGCAAGATGGAGAAAAG 543
Query 538 AGATCGATTGGCTTCTCTCCGTGACCGAGTACGTTGTTGAGTTTGCTCCATCTCAGCaaa 597
|||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 544 AGATTGATTGGCTTCTCTCCGTGACCGATTACGTGGTTGAGTTTGCTCCATCTCAGCAGA 603
Query 598 aaaaTAAAGATGGGACCAATATGGAGATAATGACCACACGCCAACGTACTGACCTCCACA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 AAAATAAAGATGGGACCAATATGGAGATAATGACCACACGCCAACGTACTGACCTCCACA 663
Query 658 TGAATATCCCCGCATTGAAGAAATTGGACGCCATGCTCATCGATTGTCTAGAAAATTTCA 717
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 664 TGAATATCCCCGCATTGAAGAAACTGGACGCCATGCTCATCGATTGTCTAGAAAATTTCA 723
Query 718 AGGACCAAAGCGAGTTCAGCTATGTCTCAAAAGACTCCCCAGACTCAGACGGTAAGAGAA 777
||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||
Sbjct 724 AGGACCAAAGCGAGTTCAGCTATATCTCAAAAGACTCCCCTGACTTAGACGGTAAGAGAA 783
Query 778 ACGACGACAAATGGTGGATTCCGACCGTCAAAGTTGCC-CCAGATGGTCTATCAGAAGCT 836
||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 784 ACGACGAAAAATGGTGGATTCCGACCGTCAAAGTT-CCACCAGATGGTCTATCAGAAGCT 842
Query 837 TCAAGAAGGTTCTTGCAATACCAGAAAGATTGTGTAAACCAGGTTCTAAAGGCAGCCATG 896
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 TCAAGAAGGTTTTTGCAGTACCAGAAAGATTGTGTAAACCAGGTTCTAAAGGCAGCCATG 902
Query 897 GCCATAAACGCACAGGTTTTGTTCGAGATGGAGATACCAGAGAGCTACATCGACTCTCTC 956
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 903 GCCATAAACGCACAGGTTTTGTTCGAGATGGAGATACCTGAGAGCTACATCGACTCTCTC 962
Query 957 CCCAAGAACGGGAGGGCGAGTCTCGGGGATCAGATGTACAAGAATATAACGGTGGACTTC 1016
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CCAAAGAACGGGAGGGCGAGTCTCGGGGATCAGATGTACAAGAATATAACGGTGGACTTC 1022
Query 1017 TTTGACCCGGACCAGTTCCTGAGCAGCATGGACATGTCGTCGGAGCACAAGATCGTCGAC 1076
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1023 TTTGACCCGGACCAGTTCCTGAGCAGCATGGACATGTCGTCGGAGCACAAGATCGTGGAC 1082
Query 1077 CTCAAAAACAGGATCGAGGCATCAATCATTATATGGAAACGCAAAATGGTTTATAAAGAC 1136
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 CTCAAAAACAGAATCGAGGCATCAATCATTATATGGAAACGCAAAATGGTTTATAAAGAC 1142
Query 1137 AGCAAATCATCGGCACCATGGGCCTCCGGAGTAAGTCTGGAGAAGCGAGAGGTTTTCGAG 1196
| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1143 AACAAATCATCGGCACCCTGGGCCTCCGGAGTAAGTCTGGAGAAGCGAGAGGTCTTCGAA 1202
Query 1197 GAGCGAGCTGAGACCATTTTGCTCATTCTCAAGCAAAGATACCCTGGGATATCTCAGTCG 1256
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 1203 GAGCGAGCTGAGACCATTTTGCTCATTCTCAAGCAAAGATACCCCGGGATTTCTCAATCT 1262
Query 1257 GCACTCGACATCAGCAAAATCCAGTTCAACAAGGACGTGGGTCAAGCGGTGCTGGAGAGC 1316
||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||
Sbjct 1263 TCACTCGACATCAGCAAAATCCAGTTCAACGAGGACGTGGGCCAGGCGGTGCTGGAGAGC 1322
Query 1317 TACTCGAGAATACTGGAGAGCTTGGCGTACACGGTACTGTCGAGAATCGATGACGTTTTA 1376
||||||||||||||||| |||||||| ||||||||||| || ||||||||||||||||||
Sbjct 1323 TACTCGAGAATACTGGAAAGCTTGGCCTACACGGTACTTTCCAGAATCGATGACGTTTTA 1382
Query 1377 GAGGCAGATCGAGCGGGGAGCAAGAGGAACACGCCGAT-GGAATCAGAGGACGAGACGCT 1435
||||||||||||||||||| ||||||||||||||| || |||| ||||||| ||||||||
Sbjct 1383 GAGGCAGATCGAGCGGGGAACAAGAGGAACACGCC-ATTGGAAGCAGAGGAAGAGACGCT 1441
Query 1436 GGTTGGGAGCATGACGCTGTCGGATTTCATGGGATGGGACTTCGATCAGGCCGGGAACGC 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1442 GGTTGGGAGCATGACGCTGTCGGATTTCATGGGATGGGACTTCGATCAGGCCGCGAACGC 1501
Query 1496 CGACTTGGAGTCGAAGAGGGATCTATCGGATGATCCGTTGGTGAAGGAGAAGCTAAGCGT 1555
||| ||||||||||||| ||||||| |||||||||||||| | |||||||||||||||||
Sbjct 1502 CGAATTGGAGTCGAAGAAGGATCTACCGGATGATCCGTTGATAAAGGAGAAGCTAAGCGT 1561
Query 1556 CGTCACGACCAAGAAGACATCATACCTCGAAACCCTAGGCGGCGTCAAGAGTCCAACGGC 1615
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1562 CGTCACGACCAAGAAGACCTCATACCTCGAAACCCTAGGCGGTGTCAAGAGTCCAACGGC 1621
Query 1616 GCGGCATTGATA 1627
|||||||||||
Sbjct 1622 ACGGCATTGATA 1633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81375083445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5