BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477286
Length=1935
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79820.1 | Symbols: SGB1 | Major facilitator superfamily pro... 2743 0.0
AT1G79810.1 | Symbols: TED3, PEX2, ATPEX2 | Pex2/Pex12 N-termin... 172 9e-42
> AT1G79820.1 | Symbols: SGB1 | Major facilitator superfamily protein
| chr1:30022351-30027377 REVERSE LENGTH=1825
Length=1825
Score = 2743 bits (1485), Expect = 0.0
Identities = 1667/1753 (95%), Gaps = 19/1753 (1%)
Strand=Plus/Plus
Query 186 GAGCGTGTTTCCCA-AGGGGATGGATTCTGTTCGACGCACTTACACCATTATGCGAGGCC 244
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 89 GAGCGTGTTT-CCAGAGGGGATGGATTCTGTTCGACGCACTTACACCATTATGCGAGGTC 147
Query 245 GTCACATAGACAAGCGTGTTCCTTCTAAAGACTTTCTCTCTGCTTTGGATAAAGCTGAAA 304
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 148 GTCACATAGACAAGCGTGTTCCTTCTAAAGAGTTTCTCTCTGCTTTGGATAAAGCTGAAA 207
Query 305 CTGCAGTACGTCTGCCTACTGGGACGGGAAAAGACAACGGGAATCCTTCCTGGAAGCGAT 364
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 208 CTGCAGTACGTCTTCCTACTGGGACGGGAAAAGACTGCGGGAATCCTTCCTGGAAGCGAT 267
Query 365 CTCTGCCTCACGTGCTCGTTGCATCCCTGACTTCTCTTTTATTCGGCTATCATCTCGGGG 424
|||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 268 CTCTGCCTCACGTGCTCGTTGCTTCTCTGACTTCGCTTTTATTCGGCTATCATCTCGGGG 327
Query 425 TTGTTAATGAAACTCTCGAAAGCATATCAATTGACCTTGGCTTTAGTGGAAACACCATCG 484
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 328 TTGTTAATGAAACTCTCGAAAGCATATCAATTGACCTTGGCTTTAGTGGGAACACCATAG 387
Query 485 CTGAAGGTCTTGTGGTTAGCACGTGCTTAGGCGGCGCCTTTATTGGGTCTCTGTTTAGTG 544
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 388 CTGAAGGTCTTGTGGTTAGCACCTGCTTAGGCGGCGCCTTTATTGGGTCTCTGTTCAGTG 447
Query 545 GGTTGGTAGCGGATGGTGTTGGGCGCCGTAGAGCTTTCCAGTTGAGCGCTCTACCCATGA 604
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 448 GGTTGGTAGCTGATGGTGTTGGGCGCCGTAGAGCTTTCCAGTTGAGCGCTTTACCAATGA 507
Query 605 TTGTTGGAGCTTCAGTGAGTGCATCAACTGAGAGTCTTGA-GGGCATGCTCCTGGGAAGG 663
||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 508 TTGTTGGAGCTTCTGTGAGTGCATCAACTGAGAGTCTT-ATGGGCATGCTCCTGGGAAGG 566
Query 664 TTTTTGGTCGGAATTGGGATGGGCATAGGTCCTTCTGTTACGGCTCTCTATGTAACTGAG 723
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 567 TTTTTGGTCGGAATTGGGATGGGCATAGGTCCTTCTGTTACAGCTCTCTATGTCACTGAG 626
Query 724 GTGTCACCTGCTTATGTGAGAGGTACATATGGGAGTTCTACCCAAATCGCCACATGTATT 783
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 627 GTGTCACCTGCTTATGTGAGAGGTACATATGGGAGTTCTACCCAAATCGCAACATGTATT 686
Query 784 GGACTCTTAGGTTCGCTGTTTGCTGGAATCCCGGCAAAAGATAACTTGGGCTGGTGGCGT 843
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 GGACTCTTAGGTTCGCTGTTTGCTGGAATCCCGGCAAAAGATAACTTGGGCTGGTGGCGC 746
Query 844 ATATGTTTTTGGATATCCACAGTCCCAGCCGCAATGCTTGCTGTCTTCATGGAACTCTGC 903
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 747 ATATGTTTTTGGATATCCACAGTCCCAGCTGCAATGCTTGCTGTCTTCATGGAACTCTGC 806
Query 904 GTGGAAAGTCCTCAGTGGCTTTTTAAGAGGGGAAGGGCAGCTGAAGCTGAAGCCGTGTTT 963
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 807 GTGGAAAGTCCTCAGTGGCTTTTTAAGAGGGGAAGGGCAGCTGAAGCTGAAGCTGTGTTT 866
Query 964 GAGAAGCTATTGGGAGGGTCATACGTCAAAGCTTCTATGGCAGAGTTAATGAAGTCGGAT 1023
|||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||
Sbjct 867 GAGAAGCTATTGGGAGGGTCGTACGTCAAAGCTGCTATGGCAGAGTTAGTGAAGTCGGAT 926
Query 1024 AGGGGAGATGACGCGGATTCAGCCAAATTGTCGGAGTTGCTTTTCGGGCGCAGTTTTAGA 1083
|||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 927 AGGGGAGATGACGCCGATTCAGCCAAATTGTCGGAGTTGCTTTTTGGACGCAGTTTTAGA 986
Query 1084 GTGGTTTTCATTGGATCTACCCTTTTTGCTTTACAACAGTTGTCGGGGATAAACGCTGTG 1143
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 987 GTGGTTTTCATTGGATCTACCCTTTTTGCTTTACAACAGTTGTCTGGGATAAATGCTGTG 1046
Query 1144 TTCTATTTCTCATCAACCGTCTTCAAGAAAGCTGGTGTACCTTCAGCCTCTGCAAACATA 1203
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 TTCTATTTCTCATCAACTGTCTTCAAGAAAGCTGGTGTACCTTCAGCCTCTGCAAACATA 1106
Query 1204 TGTGTAGGAGTTTGCAACCTCTTAGGTTCAACTGTAGCGGTGGTTTTGATGGATAAGCTG 1263
|||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 1107 TGTGTAGGAGTTTGCAACCTCTTAGGATCAACTGTTGCTGTGGTTTTGATGGATAAGCTG 1166
Query 1264 GGGAGAAAAGTGTTGCTTATTGGGAGTTTTGCAGGCATGGCAGTATCGCTGGGTCTCCAA 1323
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1167 GGGAGAAAAGTGTTGCTTATTGGGAGTTTTGCGGGCATGGCAGTATCGCTGGGTCTCCAA 1226
Query 1324 GCAATAGCATATACTTCGCTTTCATCGCCCTTTGGAACCTTGTTTCTCTCAGTTGGTGGA 1383
||||||||||||||||||||| | |||||||||||||||||||||||||| ||||| |||
Sbjct 1227 GCAATAGCATATACTTCGCTTCCTTCGCCCTTTGGAACCTTGTTTCTCTCGGTTGGAGGA 1286
Query 1384 ATGCTACTGTTTGTGTTGTCGTTCGCAACTGGAGCTGGTCCTGTTCCAAGTCTTCTCCTG 1443
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1287 ATGCTGCTGTTTGTGTTGTCGTTTGCAACTGGAGCGGGTCCTGTTCCAAGTCTTCTCCTG 1346
Query 1444 TCTGAGATATGCCCTGGTCGACTTCGGGCAACAGCGTTGGCCGTTTGTCTTGCTGTTCAC 1503
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||
Sbjct 1347 TCTGAGATATGCCCTGGTCGACTTCGAGCAACTGCGTTGGCTGTTTGTCTTGCCGTTCAC 1406
Query 1504 TGGGTAATAAACTTCTTTGTGGGGTTGCTGTTTCTGAGAATGCTGGAGCAACTAGGTTCG 1563
||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1407 TGGGTTATAAACTTCTTTGTCGGGCTGCTGTTTCTGAGAATGCTGGAGCAACTAGGTTCG 1466
Query 1564 GTGCTTCTAAATGCAATCTTTGGGTTCTTCTGTGTGGTGGCAGTCATCTTTGTGCAGAAG 1623
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 GTGCTTCTAAATGCAATATTTGGGTTCTTCTGTGTGGTGGCAGTCATCTTTGTGCAGAAG 1526
Query 1624 AACGTGGTTGAGACTAAAGGAAAGAGCCTCCAAGAGATAGAAATCAGTCTGCTCTCTTCC 1683
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1527 AACGTGGTTGAGACTAAAGGAAAGAGCCTACAAGAGATAGAAATCAGTCTGCTCTCTTCC 1586
Query 1684 ACCCAGTGATACCCAGTGATCTCTTTATGCAGATAATTCGTATTATTCTTCTGGCTCTCt 1743
|||||||||| |||||||||||| | || ||||||||||||||||||||||||||
Sbjct 1587 ACCCAGTGAT------TGATCTCTTTATTCTGAGAATTCGTATTATTCTTCTGGCTCTCT 1640
Query 1744 ttttttCCTTGGAGGGATACAAGTAAAATGTACTACTAGTATGGAAGTAGGAGTGAGTAG 1803
|||||||||||||| || |||||||| ||||| ||| |||||||||||||||||||||
Sbjct 1641 TTTTTTCCTTGGAGAGACACAAGTAACGTGTAC--CTAATATGGAAGTAGGAGTGAGTAG 1698
Query 1804 TAAGTAGTTCA-CAACATGTAAGGAAATGGATATTATTCATTCAAGTATAGCCGACGTTT 1862
||||||| | | ||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1699 TAAGTAGGTAAACAACATGTAAGGAAATGGATATTATTCATTCGAGTATAGCCAACGTTT 1758
Query 1863 CAACTGATTTTATAGTAAACATAAGACCCAACTTCATTCAATAATGGTATTGGTAGGTTC 1922
||||||||||| || ||||||||||||| |||||||||||| ||||||| ||| | |
Sbjct 1759 CAACTGATTTTGTAATAAACATAAGACCAAACTTCATTCAACAATGGTA--GGT---T-C 1812
Query 1923 TCAACTCATGTAC 1935
|||||||||||||
Sbjct 1813 TCAACTCATGTAC 1825
> AT1G79810.1 | Symbols: TED3, PEX2, ATPEX2 | Pex2/Pex12 N-terminal
domain-containing protein / zinc finger (C3HC4-type RING
finger) family protein | chr1:30019744-30022486 FORWARD LENGTH=1532
Length=1532
Score = 172 bits (93), Expect = 9e-42
Identities = 127/142 (89%), Gaps = 7/142 (5%)
Strand=Plus/Minus
Query 1795 AGTGAGTAGTAAGTA-GTTCACAACATGTAAGGAAATGGATATTATTCATTCAAGTATAG 1853
||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 1532 AGTGAGTAGTAAGTAGGTAAACAACATGTAAGGAAATGGATATTATTCATTCGAGTATAG 1473
Query 1854 CCGACGTTTCAACTGATTTTATAGTAAACATAAGACCCAACTTCATTCAATAATGGTATT 1913
|| ||||||||||||||||| || ||||||||||||| |||||||||||| |||||||
Sbjct 1472 CCAACGTTTCAACTGATTTTGTAATAAACATAAGACCAAACTTCATTCAACAATGGTA-- 1415
Query 1914 GGTAGGTTCTCAACTCATGTAC 1935
||| | ||||||||||||||
Sbjct 1414 GGT---T-CTCAACTCATGTAC 1397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95832840405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5