BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477288
Length=1381
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79810.1 | Symbols: TED3, PEX2, ATPEX2 | Pex2/Pex12 N-termin... 2130 0.0
AT1G79820.1 | Symbols: SGB1 | Major facilitator superfamily pro... 154 2e-36
> AT1G79810.1 | Symbols: TED3, PEX2, ATPEX2 | Pex2/Pex12 N-terminal
domain-containing protein / zinc finger (C3HC4-type RING
finger) family protein | chr1:30019744-30022486 FORWARD LENGTH=1532
Length=1532
Score = 2130 bits (1153), Expect = 0.0
Identities = 1313/1387 (95%), Gaps = 24/1387 (2%)
Strand=Plus/Plus
Query 1 AACTTTGCCTTGTTGTCTATTGCCGGAATTTCAAACCCTAGCCCTGCTACACCGCCAATG 60
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 144 AACTTTGCCTTGTTGTCTATCGCCGGAATTACAAACCCTAGCCCTGCTACACCGCCAATG 203
Query 61 ACGCCGTCTCCGCCTCCGCCTCCAGACGATGCTTGGATCCGCTCTTACCACCGCTTGCTT 120
||||||||| ||||| | |||||||||||||||||||||||||||| |||||||||
Sbjct 204 ACGCCGTCTACGCCT--G----CAGACGATGCTTGGATCCGCTCTTACCAGCGCTTGCTT 257
Query 121 CCTGAATCGCAGTCTCTTCTCGCTTCCCGCCGGTCAATTATACCGGTTGCAATCTCTAGA 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 258 CCTGAATCGCAGTCTCTTCTCGCTTCCCGCCGGTCAGTTATACCGGTTGCAATCTCTAGA 317
Query 181 GTGAATCAGTTTGACGCAGCACGACTAGATGTTGAAATGTCAGCCATGTTGAAGGAACAG 240
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 318 GTGAATCAGTTCGACGCAGCACGACTAGATGTGGAAATGTCAGCCATGTTGAAGGAACAG 377
Query 241 CTGGTTAAGGTTTTCACTTTGATGAAGCCAGGAATGCTCTTTCAATACGAACCAGAACTT 300
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 378 CTCGTTAAGGTTTTCACTCTGATGAAGCCAGGAATGCTCTTTCAATACGAACCAGAGCTT 437
Query 301 GATGCTTTCCTTGAGTTTCTCATTTGGAGATTCTCTATTTGGGTTGACAAACCCACCCCC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 GATGCTTTCCTTGAGTTTCTCATTTGGAGATTCTCTATTTGGGTTGACAAACCCACCCCC 497
Query 361 GGAAATGCTCTCATGAATCTTAGATACAGAGATGAAC---GAGTCGTAGCCAAAGTGTAC 417
||||| ||||||||||||||||||||||||||||||| ||||||| | | | | ||
Sbjct 498 GGAAACGCTCTCATGAATCTTAGATACAGAGATGAACGAGGAGTCGTTG-CTCA--GCAC 554
Query 418 TCT-CGTATAGTCAGAACAGGACTGGAAGGACCCGGACTTACTGCTCCTCAAAAGATTTG 476
| | | | |||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 555 T-TGGGGAAAGTCAGAACAGGACTGGAAGGACCCGGACTTACTTCTCCCCAAAAGATTTG 613
Query 477 GTACTGTGTTGCCTCCGTTGGTGGTCAGTACCTCTTCTCCCGTTTGCAGTCATTTTCTGC 536
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 GTACTGCGTTGCCTCCGTTGGTGGTCAGTACCTCTTCTCCCGTTTGCAGTCATTTTCTGC 673
Query 537 TTTCCGTAGATGGGGTGATTCTGAGCAGAGACCATTGGCTAGGCGACTTTGGACCCTCAT 596
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 674 TTTCCGTAGATGGGGTGATTCTGAGCAGAGACCATTGGCAAGGCGACTTTGGACCCTCGT 733
Query 597 ACAACGAATCGAAGGCATCTACAAAGCTGCTTCTTTTCTTAACCTATTGTCATTTCTTTA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 ACAACGAATCGAAGGCATCTACAAAGCTGCTTCTTTTCTTAACCTATTGTCATTTCTTTA 793
Query 657 TACGGGAAGGTACAGGAACCTCATTGAAAAAGCTTTAAAAGCTAGGCTTGTCTATAGGAG 716
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 TACGGGAAGGTATAGGAACCTCATTGAAAAAGCTTTAAAAGCTAGGCTTGTCTATAGGAG 853
Query 717 TCCCCATATGAACCGATCTGTCAGCTTCGAGTACATGAACCGCCAACTTGTGTGGAATGA 776
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 854 TCCCCATATGAACCGATCTGTCAGCTTCGAGTACATGAATCGGCAACTTGTGTGGAATGA 913
Query 777 ATTTTCGGAAATGCTTTTGTTGCTTCTTCCGCTGCTCAACTCTTCAGCTGTGAAGAATAT 836
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 914 ATTTTCGGAAATGCTTTTGTTGCTTCTCCCGCTGCTCAACTCTTCAGCTGTTAAGAATAT 973
Query 837 TCTTAGTCCATTTGCCAAGGACAAGTCCTCAAGCACTAAAGAGGATACAGTGAATTGCCC 896
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 974 TCTTAGTCCATTTGCCAAGGACAAGTCCTCAAGCACTAAAGAGGATACAGTGACTTGCCC 1033
Query 897 TATTTGCCAAGTGGATCCTGCAATTCCTTTTATTGCTCTGCCTTGTCAGCACAGGTACTG 956
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1034 TATTTGCCAAGTGGATCCTGCAATTCCGTTTATAGCTCTGCCTTGTCAGCACAGGTACTG 1093
Query 957 TTACTACTGCATAAGGACCCGCTGCGCTTCAGCAGCATCGTTCCGGTGTCTTAGATGTAA 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 TTACTACTGCATAAGGACCCGCTGCGCTTCAGCAGCATCGTTCCGGTGTCTTAGATGTAA 1153
Query 1017 CGAGCCTGTGGTTGCCATACAACGGGAAGGTGTTTCAAGTGGCAAATGAAAGGAGGTGAC 1076
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1154 CGAGCCTGTGGTTGCCATACAACGGGAAGGTGTTTCAAGTGGCAAATGAATGGAGGTGAC 1213
Query 1077 GAATTGTTGAGTCATGCCACCAAGTCTTGAAGAATAAGCAGCTGCAATAGTGGAAGTGTA 1136
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1214 AAATTGTTGAGTCATGCCACCAAGTCTTGAAGAATAAGCAGATGCAATAGTGGAAGTGTA 1273
Query 1137 AAAAGCTAAGGCAAGCAGCCGAAAGCAGAGAAGAATCTGATAGGCGTTCGTTTGCAAACA 1196
|||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||| |||
Sbjct 1274 AAAAGCCAAGGCAAGCAGCCGAAAGCAGAGAAGAATCTGATAGGTGTTTGTTTGCAGACA 1333
Query 1197 GGCTGTACAA-AAGGGAACATCATCGA-TGTGATGCAGCAAAGAAATTTAGATAGGTACA 1254
| || ||||| ||||||||||||| || ||||||||| |||| ||||| |||||||| ||
Sbjct 1334 GACTATACAATAAGGGAACATCAT-GAATGTGATGCAACAAAAAAATT-AGATAGGTGCA 1391
Query 1255 TTTCTGTACATGAGTTGAGAACCTACCAATACCATTATTGAATGAAGTTGGGTCTTATGT 1314
||||||||||||||||||||||||||| | | |||||||||||| ||||||||||
Sbjct 1392 CTTCTGTACATGAGTTGAGAACCTACCA-T----TG-TTGAATGAAGTTTGGTCTTATGT 1445
Query 1315 TTACTATAAAATCAGTTGAAACGTCGGCTATACTTGAATGAATAATATCCATTTCCTTAC 1374
||| || ||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1446 TTATTACAAAATCAGTTGAAACGTTGGCTATACTCGAATGAATAATATCCATTTCCTTAC 1505
Query 1375 ATGTTGT 1381
|||||||
Sbjct 1506 ATGTTGT 1512
> AT1G79820.1 | Symbols: SGB1 | Major facilitator superfamily protein
| chr1:30022351-30027377 REVERSE LENGTH=1825
Length=1825
Score = 154 bits (83), Expect = 2e-36
Identities = 110/122 (90%), Gaps = 6/122 (5%)
Strand=Plus/Minus
Query 1260 GTACATGAGTTGAGAACCTACCAATACCATTATTGAATGAAGTTGGGTCTTATGTTTACT 1319
|||||||||||||| | ||| ||||||| |||||||||||| ||||||||||||| |
Sbjct 1825 GTACATGAGTTGAG-A---ACC--TACCATTGTTGAATGAAGTTTGGTCTTATGTTTATT 1772
Query 1320 ATAAAATCAGTTGAAACGTCGGCTATACTTGAATGAATAATATCCATTTCCTTACATGTT 1379
| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1771 ACAAAATCAGTTGAAACGTTGGCTATACTCGAATGAATAATATCCATTTCCTTACATGTT 1712
Query 1380 GT 1381
||
Sbjct 1711 GT 1710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68021738475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5