BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477295
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79760.1 | Symbols: DTA4 | downstream target of AGL15-4 | ch... 1417 0.0
> AT1G79760.1 | Symbols: DTA4 | downstream target of AGL15-4 |
chr1:30012048-30013495 FORWARD LENGTH=1359
Length=1359
Score = 1417 bits (767), Expect = 0.0
Identities = 1053/1181 (89%), Gaps = 60/1181 (5%)
Strand=Plus/Plus
Query 1 ACAAAAATGGGAGCTTCTTCTCCTAACTTTCGAGCCCCTCCTCCATCCCCCGTAGCATCC 60
||||||||||||| ||| ||||| |||| |||||||||||||| ||||| |||||||||
Sbjct 1 ACAAAAATGGGAGTTTCCTCTCCCGACTTCCGAGCCCCTCCTCCGTCCCCGGTAGCATCC 60
Query 61 AGCCGCCGGGCCTCCTTCACGGCCAACGAAGACGTCCTCTCGGAGTTCCTGGACAAGTGT 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCCGCCGTGCCTCCTTCACGGCCAACGAAGACGTCCTCTCGGAGTTCCTGGACAAGTGT 120
Query 121 GGTCGAGTCCCAAATCTTGTATTGCCCGATAAAGTCTTCCCCAAGCACACATTCCTTCTG 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGTCGAGTCCCAAATCTTGTATTGCCCGATAAAGTCTTCCCCAAGCACACATTCCTTCTC 180
Query 181 AACCCTCCCACCTTCGATTTCCTCCGGTTGGACTCCCTCTCGACCCTGCTGGATGCCATC 240
|||||||||||||||||||||| ||||||||||||||||||| | ||||| |||||||||
Sbjct 181 AACCCTCCCACCTTCGATTTCCACCGGTTGGACTCCCTCTCGGCTCTGCTTGATGCCATC 240
Query 241 GCCACCATCGGTTGTTTTCAGCTCGTTAACCACGGTGTTCCAGAGGCTATGGTGAAAGCC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCCACCATCGGTTGTTTTCAGCTCGTTAACCACGGTGTTCCAGAGGCTATGGTGAAAGCC 300
Query 301 GTCATGGACAGAACCATTTTCCACGATGAGACGGAGGAGTTTGTTTTTTATAAAGATATT 360
| |||||||| |||||||||||||||||||||||||||||| || ||| |||||||||||
Sbjct 301 GCCATGGACAAAACCATTTTCCACGATGAGACGGAGGAGTTCGTGTTTAATAAAGATATT 360
Query 361 ---GCTGATGATCACACGGCTTGTTATTCAGATTTGAGGGAGTTGATGGGTGAGGCAGAG 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AATGCTGATGATCACACGGCTTGTTATTCAGATTTGAGGGAGTTGATGGGTGAGGCAGAG 420
Query 418 AGGATAGGGAAGGCGGTGAGAGAAAAGCTAGGAGCAGGA--A-GAAGCCAAAAGGAAGAG 474
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
Sbjct 421 AGGATAGGGAAGGCGGTGAGAGAAAAGCTAGGAGCAGGAGGAAGAAGCCAAAAGGAAG-G 479
Query 475 GAAGAAGGGGTTAGGGTTTGCTACGTGAATAAACATAATATTAAGGGTAGCAAAAACGAA 534
| | ||||||| | |||||||||| | ||||||||||| | || ||||
Sbjct 480 G--GTAGGGGTT----T--GCTACGTGAAGAGGCATAATATTAA----A--AA---CGAA 522
Query 535 TCAAAGGAAGAAGCCATAAGGATGCTGATAAGAGGGTATGACGAAAGACATTCTCTGTGT 594
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||
Sbjct 523 TCAAAGGAAGAAGCCATAAGGATGCTGCTAAGAGGCTATGACGAAAGACATTCTCTATGT 582
Query 595 CTCAACTTCTGCCATGCAGAGTTCCACGTCTACTCCAAGAGAGGTTGGGTCTCCTTCTCC 654
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 583 CTCAACTTCTGCCATGCAGAGTTCCACGTCTACTCCAAAAGAGGTTGGGTCTCCTTCTCC 642
Query 655 CCACGTCCGGATGCTGTGGTCGTGACGGTCGGAGATGAAGGCTGGAGCGGCAGATTCAAG 714
|||||||| ||||| ||| |||| || |||||||| ||||||||||||| |||||||||
Sbjct 643 CCACGTCCCGATGCGGTGATCGTCACAATCGGAGATCAAGGCTGGAGCGGAAGATTCAAG 702
Query 715 GGTGTTGTGGGGAAGCCCCTTCTTTACAAATCAGATCTTCATCACAATCTCATTTCTATA 774
|| |||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 703 GGCGTTGTGGGGAGGCCCCTTCTTTACAAATCAGATCTTCATCACAATCTGATTTCCATA 762
Query 775 TCCTTTCTCTACACTAGTAAC-ACTAGTCACAACAACACCGGCAGAAGAATTATCAAAAG 833
||||||||||||||||||| | || | || | ||||||| |||||| ||||| ||||||
Sbjct 763 TCCTTTCTCTACACTAGTA-CTACCACTCTCCACAACACAAGCAGAAAAATTACCAAAAG 821
Query 834 GAAGAAGAAGAAGACCATTTCCCTCTCCCAACAGCTCCTCTTTGCTCTATTTCTCACACT 893
|| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 822 GACGAAGAAGAAGACCATTTCCCTCTTCCAACAGCTCCTCTTTGCTCTCTTTCTCACACT 881
Query 894 CCTCTTCCCTTTCTTATTTCCTTGATCATTACATACTTGTTGC-TT-TT-CT--TT---- 944
|||||||||||| ||| |||||||||||||||||||||||||| || || || ||
Sbjct 882 CCTCTTCCCTTTTTTACTTCCTTGATCATTACATACTTGTTGCCTTGTTGCTCCTTTTTT 941
Query 945 -------------GGAAACTAAAAAACAATTGCGGCAGTGTGTATCTCAATCTTGTTT-- 989
||||||||||| |||| || || | ||||||||||||||||||||
Sbjct 942 CCTTTTTTTCTTTGGAAACTAAAATACAAGTG-GGTAATGTGTATCTCAATCTTGTTTAA 1000
Query 990 T---AGCCTTTTACCCA-GCAATGCATGGGCCCAATCATTCAATTTAAAAGCCCACTATA 1045
| |||||||| |||| ||||||||||| |||||||||||| ||||||| ||| |||||
Sbjct 1001 TTTTAGCCTTTTTCCCAAGCAATGCATGG-CCCAATCATTCAGTTTAAAATCCCGCTATA 1059
Query 1046 TCCAAATAATGATATCTGACCTTCTTCACCCATTCGGTTATCAATCTCCTTTCCCAATCC 1105
||||||||| ||||| ||||| || |||||||||||||||||||||| | ||||||||
Sbjct 1060 TCCAAATAACGATATTTGACCC-CT-CACCCATTCGGTTATCAATCTCATG-CCCAATCC 1116
Query 1106 A-TCGACACTGCGCACGAATCAGATAGATATATACACTGAA 1145
| | ||||||||||| |||||| |||||||||||| |||||
Sbjct 1117 ACTTGACACTGCGCAAGAATCACATAGATATATACTCTGAA 1157
Score = 124 bits (67), Expect = 2e-27
Identities = 83/90 (92%), Gaps = 3/90 (3%)
Strand=Plus/Plus
Query 1146 AGCACATATCCACCTTCGAGTATTTCACTGCAAGAAAGCGTAACATTTACATATATATGC 1205
||||||||||||||||||||||||||||||||||||| |||||| | | ||||||||||
Sbjct 1205 AGCACATATCCACCTTCGAGTATTTCACTGCAAGAAA-CGTAACGTGT--ATATATATGC 1261
Query 1206 ACAGATTTGATGTATAATAATGTTATGCAT 1235
|||||||||||||||| ||||| |||||||
Sbjct 1262 ACAGATTTGATGTATAGTAATGCTATGCAT 1291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001683975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5