BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477298
Length=1931
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79730.1 | Symbols: ELF7 | hydroxyproline-rich glycoprotein ... 2754 0.0
> AT1G79730.1 | Symbols: ELF7 | hydroxyproline-rich glycoprotein
family protein | chr1:30000538-30004005 REVERSE LENGTH=2011
Length=2011
Score = 2754 bits (1491), Expect = 0.0
Identities = 1785/1920 (93%), Gaps = 47/1920 (2%)
Strand=Plus/Plus
Query 42 CTCAAAATCCTTTGGCCCCTCCGCCTCCTCCGCCGTCTTTACCCCCTCCTGTTCCTCCCC 101
|||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 83 CTCAAAATTCTTTGGCCCCTCCGCCTCCCCCGCCGTCGTTACCCCCTCCTGTTCCTCCCC 142
Query 102 CACCACCGTCGCATCAACCGTACTCTTATCCT---CCGCCGCCTCCCCCTCCGCATGCTT 158
||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||
Sbjct 143 CACCACCGTCGCATCAACCGTACTCATATCCTCCGCCGCCGCCTCCTCCTCCGCATGCTT 202
Query 159 ACTATCAGCA---G------TATCCTCAATTCAACCAGGTCCAAGctcctcctcctccac 209
|||||||||| | |||||||||||||||||| ||||||||||||||||| |
Sbjct 203 ACTATCAGCAGGGGCCCCACTATCCTCAATTCAACCAGCTCCAAGCTCCTCCTCCT---C 259
Query 210 ctccacctccctcagctcctcctcccctcgtacccgatcctcctcGAAATCAAGGG-CCC 268
| ||||||||||||||||||||||| ||||| ||||||||||||||| | | |||| |||
Sbjct 260 CGCCACCTCCCTCAGCTCCTCCTCCGCTCGTTCCCGATCCTCCTCGACA-CCAGGGTCCC 318
Query 269 AATGACCGCGACAAAGGGGCCT-----C------G-AGGCGGGAGCGTGCTAAACCGGAT 316
||||||| ||| |||||||||| | | ||||||||||||||||||||||||
Sbjct 319 AATGACCACGAGAAAGGGGCCTCCAAGCAGGTTGGAAGGCGGGAGCGTGCTAAACCGGAT 378
Query 317 CCATCGAAG---CACCACAGGTCTCATCTTCCCCATACTAAGAAAATCgagaccgaagaa 373
||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 379 CCATCGAAGCACCACCACAGGTCTCATCTTCCTCATTCTAAGAAAATCGAGACCGAAGAA 438
Query 374 gagaggaggcttaggaagaagaaggagttagagaaacaaaggcaagaagaaaaacttaga 433
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||
Sbjct 439 GAGAGGAGGCTTAGGAAGAAGAGGGAGTTAGAGAAACAAAGGCAAGACGAAAAACATAGA 498
Query 434 CAGCAGATGAAAAATTCTCACAAGTCTCAGATGCCCAAGGGACACACGGAGGAGAAGAAG 493
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 499 CAGCAGATGAAAAATTCTCACAAGTCTCAGATGCCCAAGGGACACACCGAGGAGAAGAAG 558
Query 494 CCGACGCCTCTACTCACCACCGACAGGGTCGAGAATAGGTTAAAGAAACCAACCACCTTC 553
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 CCGACGCCCCTACTCACCACCGACAGGGTCGAGAATAGGTTAAAGAAACCAACCACCTTC 618
Query 554 ATCTGCAAGCTCAAGTTCCGGAATGAGCTCCCTGACCCTAGTGCTCAGCTTAAGCTTATG 613
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 619 ATCTGCAAGCTCAAGTTCCGGAATGAGCTCCCTGACCCTAGTGCACAGCTTAAGCTTATG 678
Query 614 ACCATTAAGCGGGATAAAGATCAATTTACAAAGTATACCATCACATCGCTGGAGAAATTA 673
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 679 ACCATTAAACGGGATAAAGATCAATTTACAAAGTATACCATCACATCCCTGGAGAAATTA 738
Query 674 TGGAAACCAAAAATCTTTGTCGAGCCTGATCTTGGAATACCCTTGGATCTGCTTGACCTA 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 TGGAAACCAAAAATCTTTGTCGAGCCTGATCTTGGAATACCCTTGGATCTGCTTGACCTA 798
Query 734 AGTGTATACAACCCTCCCAAATTCAAGGCACCTCTTGCCCCTGAAGATGAAGAACTGC-T 792
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | |
Sbjct 799 AGTGTGTACAACCCTCCCAAAGTCAAGGCACCTCTTGCCCCTGAAGATGAAGAACT-CTT 857
Query 793 GCGTGATGATGATGCTATTACACCTATTAAGAAAGATGGCATCCGGAGAAAAGAAAGGCC 852
|||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 858 GCGTGATGATGACGCTGTTACACCTATTAAGAAAGATGGCATCCGGAGGAAAGAAAGACC 917
Query 853 AACTGATAAAGGTGTTTCCTGGCTCGTGAAAACACAATACATTTCTTCTATTAATAATGA 912
||||||||||| | || |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 918 TACTGATAAAGGCATGTCTTGGCTCGTCAAAACACAATACATTTCTTCTATTAATAACGA 977
Query 913 ATCGGCAAGACAGTCGCTAACTGAGAAACAAGCAAAGGAACTGCGAGAGATGAAAGGAGG 972
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 978 ATCGGCAAGACAGTCGCTAACGGAGAAGCAAGCAAAGGAACTGCGAGAGATGAAAGGAGG 1037
Query 973 CATCAACATCTTGCACAATCTTAACAATAGAGAGAGACAAATCAAGGATATTGAAGCATC 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 CATCAACATCTTGCACAATCTTAACAATAGAGAGAGACAAATCAAGGATATTGAAGCATC 1097
Query 1033 CTTTGAAGCATGCAAGTCTCGACCAGTTCATGCCACCAATAAAAGCTTGCAGCCGGTTGA 1092
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1098 CTTTGAGGCATGCAAGTCTCGACCAGTTCATGCCACCAATAAAAACTTGCAGCCGGTTGA 1157
Query 1093 AGTTTTACCACTGTTGCCATATTTTGATAGGTACGATGAGCAGTTTGTGGTAGCGAATTT 1152
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 AGTTCTACCACTGTTGCCATATTTTGATAGGTACGATGAGCAGTTTGTGGTAGCGAATTT 1217
Query 1153 TGATAGTGCTCCTACAGCTGATTCTGAATTCTTTGGCAAGCTAGACCCATCAATTCGTGA 1212
|||| ||||||||| ||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct 1218 TGATGGTGCTCCTATAGCTGATTCTGAATTCTTTGGCAAGTTGGACCCTTCAATTCGTGA 1277
Query 1213 TGAACATGAGTCACGGGCCATTTTGAAAAGCTATGTGGTGGCTGGATCAGACACTGCCAA 1272
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 TGCACATGAGTCACGGGCCATTTTGAAAAGCTATGTGGTGGCTGGATCAGACACTGCCAA 1337
Query 1273 TCCAGAAAAATTTCTGGCGTACATGGTTCCTTCGTTGGATGAGTTGTCTAAGGATATGCA 1332
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1338 TCCAGAAAAATTTCTGGCGTACATGGTTCCTTCCTTGGATGAGTTGTCTAAGGATATCCA 1397
Query 1333 TGATGAAGACGAAGATATCTCTTACACTTGGGTTCGCGAATACCACTGGGATGTACGTGG 1392
||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1398 TGATGAAAACGAAGAAATCTCTTACACTTGGGTTCGCGAATACCTCTGGGATGTACAACC 1457
Query 1393 TGATGATGCAAATGATATTGGCACATACCTGGTATCGTTTGATGATGGGGCCGCTAGCTA 1452
| ||||||| ||| |||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 1458 C-A--ATGCAAACGATCCTGGCACATACCTGGTATCATTTGACAATGGGACCGCTAGCTA 1514
Query 1453 TCTGCCCCTACCCACGAAGCTGAACTTGAGGAAGAAAAGGCCCAGGGAAGGAAGATCTTC 1512
|||||||||||||| || | |||||||||||||||||||| |||||||||||||||||||
Sbjct 1515 TCTGCCCCTACCCATGAGGTTGAACTTGAGGAAGAAAAGGGCCAGGGAAGGAAGATCTTC 1574
Query 1513 TGATGAGATTGAACACTTTCCAGTACCTTCAAGGGTGACTGTAAGGCGAAGATCAACTGT 1572
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1575 TGATGAGATTGAACACTTTCCAGTACCTTCAAGGGTAACTGTAAGGCGGAGATCAACTGT 1634
Query 1573 ATCAGTGATCGAACATAAAGATTCAGGGGTTTACTCTTCTAGGGTTGGTGCTTCGAGCTC 1632
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1635 ATCAGTGATAGAACATAAAGATTCAGGGGTTTACTCTTCTAGGGTTGGTGCTTCGAGCTC 1694
Query 1633 CAAGATGAGAAGATTAGAGGACGAAGAAGGCCTTGGTAGATCTTGGAAACATGAGCCGGA 1692
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1695 CAAGATGAGAAGATTAGAGGACGAAGGCGGCCTTGGTAGATCTTGGAAACACGAGCCGGA 1754
Query 1693 ACAAGATGCCAATCAATATAGTGATGGTAATGAGGATGATTATTCTGAATGAACGTTTTA 1752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1755 ACAAGATGCCAATCAATATAGTGATGGTAATGAGGATGATTATTCTGAATGAACGTTTCG 1814
Query 1753 TGTACTTCAAACTATTCAATCGGTTTTCCAATGGTGTGTGAAGTATCCTGCAAGGCTACT 1812
||||| |||||||||| |||||||||| ||||||| | | | |||||||||||| |
Sbjct 1815 TGTACCTCAAACTATTGAATCGGTTTTGCAATGGT-T-T----T--CCTGCAAGGCTA-T 1865
Query 1813 TTTAGGCTAATTTAAA-GCGTAATATGGCCTCGACCAGAGCCTCGTAATTTGGCAAGTAA 1871
| |||||||||||||| ||||||||||||||| |||| ||| | ||| ||||||||||||
Sbjct 1866 TGTAGGCTAATTTAAAAGCGTAATATGGCCTCCACCACAGCTTTGTAGTTTGGCAAGTAA 1925
Query 1872 AGAAATATTGATTTGGATAGCTGGCGAAGCTGAAAAACGATTTGACATGTACACGTCCAT 1931
|||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1926 AGAAATTTTGATTTGGATAGCTGGCGAAGTTGAAAAACGATTTTACATGTACACGTCCAT 1985
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95632038225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5