BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477299
Length=773
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77950.1 | Symbols: AGL67 | AGAMOUS-like 67 | chr1:29306957-... 1173 0.0
> AT1G77950.1 | Symbols: AGL67 | AGAMOUS-like 67 | chr1:29306957-29309863
FORWARD LENGTH=1027
Length=1027
Score = 1173 bits (635), Expect = 0.0
Identities = 728/774 (94%), Gaps = 2/774 (0%)
Strand=Plus/Plus
Query 1 ATGGGTCGGGTGAAATTGGAGTTAAAGCGGATAGAGAAGAACACGAACCGACAAATTACG 60
||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 73 ATGGGTCGGGTTAAATTGGAGTTAAAGCGTATAGAGAAGAGCACGAACCGACAAATTACG 132
Query 61 TTCTCAAAACGTAAAAAAGGTTTAATaaaaaaaGCGTATGAATTGTCAACACTTTGTGAT 120
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 133 TTCTCAAAACGTAAAAAAGGTTTAATAAAAAAGGCTTATGAATTGTCAACACTTTGTGAC 192
Query 121 ATCGATCTTGCCCTCCTCATGTTCTCTCCTTCCGATCGACTATGTCTCTTTTCCGGTCAA 180
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 193 ATCGATCTTGCCCTCCTCATGTTCTCTCCCTCTGATCGACTATGTCTCTTTTCCGGTCAA 252
Query 181 ACAAGGATCGAGGACGTTTTGGCGAGGTACATCAATCTTCCTGATCAAGAAAGAGAAAAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 ACAAGGATCGAGGACGTTTTGGCGAGGTACATCAATCTTCCTGATCAAGAAAGAGAAAAC 312
Query 241 GCCATAGTTTTTCCTGATCAGAGCAAACGCCAAGCTATCCAAAACAAAGAGTATTTGTTA 300
||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 313 GCCATAGTTTTCCCTGATCAGAGCAAGCGCCAAGGTATCCAAAACAAAGAGTATTTGTTA 372
Query 301 AGAACTCTGGAAAAACTCAAAATTGAAGATGACATGGCTCTCCAAATCAACGAACCTCGC 360
|| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 373 AGGACTTTGGAAAAACTCAAAATTGAGGATGACATGGCTCTCCAAATCAACGAACCTCGT 432
Query 361 CCTGAAGCTATCAACACCGATGTCGAGGAACTTGAGCAAGAAGTTTGTAGATTACAACAG 420
|| ||||| | |||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 433 CCAGAAGCCACCAACTCCAATGTCGAGGAACTTGAGCAAGAAGTTTGTAGATTACAACAA 492
Query 421 CAGCTTCAGATATCAGAGGAAGAACTAAGGAAATTCGAACCAGATCCAATGAGGTTTACA 480
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||
Sbjct 493 CAGCTTCAGATATCAGAGGAAGAACTCAGGAAATTCGAACCAGATCCAATGAGGCTAACA 552
Query 481 TCAATGGAGGAGATTGAAGCATGTGAAACTCATCTCATCAATACATTGACAAGTGTCGTA 540
||||||||||||||||||||||||||| || | ||||||||||| |||||| |||||||
Sbjct 553 TCAATGGAGGAGATTGAAGCATGTGAAGCTAACCTCATCAATACGTTGACACGTGTCGTC 612
Query 541 CAGAGAAGGGAACATTTGTTGAGGAAGTCCTGCGAAGCACCAAGTAACCAACAAAGCATG 600
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 613 CAGAGAAGGGAACATTTGTTGAGAAAGTCCTGCGAAGCACAAAGTAACCAACAAAGCATG 672
Query 601 CAGGGGATCCTTCTAAATGACATCGTCGAGGATTGGGGGCCTGAGGCTGAGCCCAAACAA 660
| ||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||
Sbjct 673 GACGGGATCCTTCTAAATGACATCGTCGAGGATTGGGGACCTGAGCCCGAGCCCAAACAA 732
Query 661 GCCCATGTCATGGCTAATTCGGCCCATCAGTCAAATCAGCTAAGCTATGATTTGCTCTTA 720
|||||| | || ||||||||||||||||| |||||||||| |||||||||||| ||||||
Sbjct 733 GCCCATATGATAGCTAATTCGGCCCATCATTCAAATCAGCCAAGCTATGATTTACTCTTA 792
Query 721 CA-AGGGAGTAATTCGAGTTCGAACCAAAATCCAAAATGATATTAGGTGAATCG 773
| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 CGCAGG-AGTAATTCGAGTTCGAACCAAAATCCAAAATGATATTAGGTGAATCG 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37575141956
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5