BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477303
Length=1728
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosp... 2678 0.0
> AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:358916-360889 FORWARD
LENGTH=1829
Length=1829
Score = 2678 bits (1450), Expect = 0.0
Identities = 1635/1721 (95%), Gaps = 26/1721 (2%)
Strand=Plus/Plus
Query 1 CTTACGATTGATCAATCCACCTTTCGATCGAAAAATCCTTCTGTTTGCGAATCTATTTTT 60
||| ||||| | |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 23 CTTGCGATTAACCAATCCACCTTTCGATCGGAAAATCCTTCTGTTTGCGAATCTA----- 77
Query 61 CTTTCAGGGGAGCTCTGGTTCCATGTGTTAGGTATTTTCCTTTCGTCGTCGATGTTTTGC 120
|| ||||| |||||||||||||||||||||||||||| || ||||||| |
Sbjct 78 --TT-GGGGGAACTCTGGTTCCATGTGTTAGGTATTTTCC-TT--TCGTCGA------CC 125
Query 121 TGATTCATCTTGTGCATGTCGATTCTGAATAATGAACGAAGAAGGCTGCGTCCCGCACAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 TGATTCATCTTGTGCATGTCGATTCTGAATAATGAACGAAGAAGGCTGCGTCCCGCACAA 185
Query 181 CTCTGATGTTGTCAAACAAAAGTCTATAGATCAAAGAGCCCCTCTTCCCGGGGAGCCTAA 240
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 186 CTCTGATGTTGTTAAACAAAAGTCTATAGATCAAAGAGCCCCTCTTTCCGGGGAACCTAA 245
Query 241 ATGTGTTATCTGCAGTCGTTATGGTGAGTACATTTGTGACGAGACCAATGATGACGTCTG 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 246 ATGTGTTATCTGCAGTCGTTATGGTGAGTACATATGTGACGAGACCAATGATGACGTCTG 305
Query 301 CAGCCTCGAGTGTAAGCAAACACTCCTGAGAAGGGTTGATAACGCTACAGTGTTTCCTGC 360
||||||||||||||||||| ||||||||||||||||||| | ||||| ||| ||||||||
Sbjct 306 CAGCCTCGAGTGTAAGCAAGCACTCCTGAGAAGGGTTGACAGCGCTAGAGTTTTTCCTGC 365
Query 361 CACAGATGAGTGCTTCTATGTTAGAGACCCAGGATCTTCTTTCCC-CGATGCTCAACTAC 419
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 366 CACAGATGAGTGCTTCTATGTTAGAGACCCAGGATCTTC-TTCCCACGATGCTCAACTAC 424
Query 420 TTAGAAGAAAGCTTGATATTCATGTCCAAGGACAAGAAGCAGCAGTCCCTCCACCTGTCT 479
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 425 TTAGAAGAAAGCTTGATATTCATGTCCAAGGACAAGGATCAGCAGTCCCTCCACCTGTCT 484
Query 480 TAACTTTCACTTCATGTGGGCTTCCTCCTAAGCTTCTTGTCAACTTAGAAACGGCTGGCT 539
| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 485 TGACTTTCACTTCATGTGGACTTCCTCCTAAGCTTCTTCTCAACTTAGAAACGGCTGGCT 544
Query 540 ATGACTTTCCCACTCCTATCCAGATGCAAGCGATCCCAGCTGCTTTAAGCGGCAATAGTC 599
|||||||||| |||||||||||||||||||| || ||||||||||||| |||||| ||||
Sbjct 545 ATGACTTTCCTACTCCTATCCAGATGCAAGCAATTCCAGCTGCTTTAACCGGCAAAAGTC 604
Query 600 TGCTCGCTTCAGCCGACACCGGCTCCGGGAAAACAGCTTCTTTTCTTGTTCCTATTATTT 659
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 605 TGCTCGCCTCAGCCGACACCGGCTCTGGGAAAACAGCTTCTTTTCTTGTTCCTATTATTT 664
Query 660 CTCGTTGTACAACGTATCGCTCTGAGCATCCCTCAGACC--A-GAGGAACCCCTTGGCTA 716
||||||| |||||||||| |||||||||||||||||||| | |||||||||||||||||
Sbjct 665 CTCGTTGCACAACGTATCACTCTGAGCATCCCTCAGACCAGAGGAGGAACCCCTTGGCTA 724
Query 717 TGGTTTTGGCTCCAACTAGAGAGCTCTGTGTCCAAATTGAAAATCAGGCAAAAATGCTCG 776
|||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 725 TGGTTTTGGCTCCAACGAGAGAGCTCTGTGTCCAAGTTGAAGATCAGGCAAAAATGCTCG 784
Query 777 GAAAGGGACTGCCATTTAAGACCGCACTTGTTGTAGGTGGTGATCCCATGTCTGGACAAC 836
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 785 GAAAGGGACTGCCATTTAAGACTGCACTCGTTGTAGGTGGTGATCCCATGTCTGGACAAC 844
Query 837 TCTACCGCATTCAGCAAGGTGTTGAATTGATCATTGGTACCCCAGGCCGGGTTGTGGACC 896
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 845 TCTACCGCATTCAGCAAGGTGTTGAATTGATCATTGGTACCCCAGGCCGGGTGGTGGACC 904
Query 897 TTCTAGT-AAAGCACGCCATTGAACTGGATAACATCATGACGTTTGTGCTGGATGAGGTT 955
||||| | ||||||| |||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 905 TTCTA-TCAAAGCACACCATTGAACTAGATAACATCATGACGTTTGTGCTGGATGAAGTT 963
Query 956 GACTGCATGCTTCAGAGAGGCTTCAGGGATCTGGTGATGCAGATATTTCAGGCCTTGTCA 1015
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 964 GACTGCATGCTTCAGAGAGGCTTCAGAGATCAGGTGATGCAGATATTTCAGGCCTTGTCA 1023
Query 1016 CAACCACAGGTCTTGCTGTTCTCTGCGACAG-TCTCAAGAGAGGTGGAAAAGGTGGGAGG 1074
||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||
Sbjct 1024 CAACCACAGGTCTTGCTGTTCTCTGCGAC-GATCTCAAGAGAGGTGGAGAAGGTGGGAGG 1082
Query 1075 GTCTCTAGCCAAGGAAATCATTTTGGTATCCATAGGTAATCCCAACAAACCTAACAAGGC 1134
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1083 GTCTCTAGCCAAGGAAATCATTTTGGTATCCATAGGTAATCCCAACAAGCCTAACAAGGC 1142
Query 1135 TGTCAACCAATTGGCTATCTGGGTTGATGCAAAGCAAAAGAAACAGAAGCTGTTTGATAT 1194
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1143 TGTCAACCAATTGGCCATCTGGGTAGATGCAAAGCAAAAGAAACAGAAGCTGTTTGATAT 1202
Query 1195 ACTCAGAAGTCAAAACCATTTCAAGCCCCCCGCTGTTGTTTATGTGAGTTCGAGAGTTGG 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 ACTCAGAAGTCAAAACCATTTCAAGCCCCCCGCTGTTGTTTATGTGAGTTCGAGAGTTGG 1262
Query 1255 AGCAGATCTCCTGGCTAATGCTATAACTGTTGTCACAGGGGTAAAAGCTCTCTCGATCCA 1314
||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 1263 AGCAGATCTCCTGGCTAATGCCATAACTGTTGTCACGGGGGTAAAAGCTCTATCGATCCA 1322
Query 1315 TGGGGAGAAGCCAATGAAGGAGAGGAGAGATGTAATGGGATCGTTTTTGGGTGGAGATGT 1374
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1323 TGGGGAGAAGCCAATGAAGGAGAGGAGAGACGTAATGGGATCGTTTTTGGGTGGAGAGGT 1382
Query 1375 GCCTGTTCTTGTATCAACAGGAGTTCTAGGCCGAGGAGTTGACCTCTTGGTGGTAAGGCA 1434
||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1383 GCCAGTTCTTGTATCAACGGGAGTTCTAGGCCGAGGAGTTGACCTATTGGTGGTAAGGCA 1442
Query 1435 GGTGATAGTGTTTGACATGCCTAGTACCATCAAGGAGTACATACATGTAATTGGCAGGGC 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 GGTGATAGTGTTTGACATGCCTAGTACCATCAAGGAGTACATACATGTAATTGGCAGGGC 1502
Query 1495 CTCTAGGATGGGAGAGAAGGGCACTGCCATTTTGTTTGTGAATGAGGACGACAGGAACCT 1554
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1503 CTCTAGGATGGGAGAGAAGGGCACTGCCATTGTGTTTGTGAATGAGGACGACAGGAACCT 1562
Query 1555 ATTCCCTGATTTGGTTGCCGCTTTAAAAAGTAGTGGTGCAGCCATACCTAAGGAACTTAT 1614
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1563 ATTCCCTGATTTAGTTGCCGCTTTAAAAAGTAGTGGAGCAGCCATACCTAAGGAACTTAT 1622
Query 1615 CAATTTGACATCCAGGGAAATGCACAACAAGAAGAGAAGGGTTGGGTACTGAAATGTATG 1674
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1623 CAATTTGACATCCAGGGAAATGCACAACAAGAAGAGAAGGGTTGGGTACTGAGATGTATG 1682
Query 1675 ACCTGGATCCAAATGTTTTTGTAAATTAAGGAAGAAAGGAA 1715
|||||||||| |||||| |||||||||||| ||||||||||
Sbjct 1683 ACCTGGATCCGAATGTTGTTGTAAATTAAGAAAGAAAGGAA 1723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85441327590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5