BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477305
Length=2780
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02060.1 | Symbols: | DEAD/DEAH box helicase, putative | ch... 4405 0.0
> AT3G02060.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr3:354360-358807 FORWARD LENGTH=2917
Length=2917
Score = 4405 bits (2385), Expect = 0.0
Identities = 2576/2668 (97%), Gaps = 14/2668 (1%)
Strand=Plus/Plus
Query 1 AAACCTCTGGGGTTCTTGTTAAAGATGACATCTTTGCTTCCAAATCCCGACCCGATTACT 60
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 26 AAACCTCTGGGGTTCTTGTTAAAGATGATGTCTTTGCTCCCAAATCCCGACCCGATTACT 85
Query 61 ATACCCCTCGTCTTCAAGCTTTGCTCCTTTCCTCCGCCACGGAGGCTCTTCTCTCTTAGG 120
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 86 GTACCCCTGGTCCTCAAGCTTTGCTCCTTTCCTCCGCCACGGAGGCTCTTCTCTCTCAGG 145
Query 121 CTCAGGCGCTTCACCCGAAAGTCATCATCTCTTCTTCCGTTTGTCGCTGTTTCCTCTCTC 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 146 CTCAGGCGCTTCACCCGAAAGTCATCATCTCTTCTTCCGTTGGTCGCTGTTTCGTCTCTC 205
Query 181 TCCGCTACTGCCCCAAAACCTGCCAGATGGAGAGAGAAGCCGGAATTAGCGGAAAGCGAC 240
|||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 206 TCCGCTACTGCCGCAAAACCTACCAGATGGAGAGAGAAGCCGGAATTGGCGGAAAGCGAC 265
Query 241 TCAATTTCCCTCCTCAACGAGAGGATTCGGCGTGACATCGGCAAGAGAGAGACTGCTAGG 300
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 266 TCAATTTCCCTCCTCAACGAGAGGATTCGGCGTGACCTCGGCAAGAGAGAGACTGCTAGA 325
Query 301 CCGGCCATGGACTCTGAGGAGACCGAGAAGTACATTCAGATGGTCAAGGAACAACAAGAG 360
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 326 CCGGCCATGGACTCTGAGGAGGCCGAGAAGTACATTCACATGGTCAAGGAACAACAAGAG 385
Query 361 AGGGGTCTGCAGAAGCTCAAAGGAATCAGGCAAGGTACAGAGGCTGCTGGT-ACCGGTGG 419
|||||||||||||||||||||||||| |||||||||||| ||||||||||| | |||||
Sbjct 386 AGGGGTCTGCAGAAGCTCAAAGGAATTAGGCAAGGTACAAAGGCTGCTGGTGA-CGGTGC 444
Query 420 TTTTAGCTATAAGGTGGACCCTTACAGTCTCCTTTCCGGTGATTATGTGGTGCACAAGAA 479
|||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TTTTAGTTACAAGGTTGACCCTTACAGTCTCCTTTCCGGTGATTATGTGGTGCACAAGAA 504
Query 480 AGTAGGCATTGGGCGTTTTGTTGGGATAAAGTTTGATGTCCCCAAGGATTCTTCAGAGCC 539
||||||||||||||||||||||||||| |||||||||||||||||||| || || |||||
Sbjct 505 AGTAGGCATTGGGCGTTTTGTTGGGATCAAGTTTGATGTCCCCAAGGACTCCTCTGAGCC 564
Query 540 CCTCGAATATGTCTTTATAGAGTATGCTGATGGCATGGCCAAGCTTCCCCTCAAACAGGC 599
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 565 CCTCGAATATGTCTTTATAGAGTATGCTGATGGTATGGCCAAGCTTCCCCTCAAACAGGC 624
Query 600 CTCGCGTTTGCTCTACCGATACAATCTACCAAATGAGACCAAACGGCCTCGGACTTTGAG 659
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 625 CTCGCGTTTGCTCTACCGATACAATCTTCCAAATGAGACTAAACGGCCTCGGACTTTGAG 684
Query 660 TCGGCTGAGTGACACTAGTGTTTGGGAAAGAAGAAAGACCAAAGGAAAAGTAGCAATTCA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 TCGGCTGAGTGACACTAGTGTTTGGGAAAGAAGAAAGACCAAAGGAAAAGTAGCAATTCA 744
Query 720 GAAAATGGTCGTTGACTTGATGGAGCTATATCTTCATAGGCTTAGACAGAAGAGATATCC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 GAAAATGGTCGTTGACTTGATGGAGCTATATCTTCATAGGCTTAGACAGAAGAGATATCC 804
Query 780 CTATCCAAAAAATCCCATCATGGCTGATTTTGCGGCTCAATTTCCTTATAACGCTACACC 839
||||| || || ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 805 ATATCCGAAGAACCCCATCATGGCTGATTTTGCGGCTCAATTTCCTTATAACGCCACTCC 864
Query 840 TGACCAGAAGCAGGCTTTCCTGGATGTTGAGAAGGATTTGACAGAGAGAGAAACTCCTAT 899
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 865 TGACCAGAAGCAGGCTTTCCTGGATGTTGAAAAGGATTTGACTGAGAGAGAAACACCTAT 924
Query 900 GGACCGATTGATCTGTGGAGATGTTGGGTTTGGTAAAACAGAGGTTGCTTTACGAGCCAT 959
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 925 GGACCGATTGATCTGTGGAGATGTTGGCTTTGGTAAAACAGAGGTTGCTCTACGAGCCAT 984
Query 960 CTTTTGTGTAGTCTCAGCTGGAAAACAAGCTATGGTTTTAGCACCGACAATTGTATTGGC 1019
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 CTTTTGTGTGGTCTCAACTGGAAAACAAGCTATGGTTTTAGCACCGACAATTGTATTGGC 1044
Query 1020 GAAGCAACATTACGATGTTATCTCAGAGCGGTTTTCCTTGTATCCACAAATCAAAGTGGG 1079
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1045 GAAGCAACATTACGATGTAATCTCAGAGCGGTTTTCCTTGTATCCACACATCAAAGTGGG 1104
Query 1080 CCTTTTAAGTCGGTTTCAGACCAAAGCAGAAAAGGAGGAGTATTTGGAAATGATAAAAGA 1139
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1105 CCTTTTAAGTCGGTTTCAGACCAAAGCTGAAAAGGAGGAGTATTTGGAAATGATAAAA-A 1163
Query 1140 -TGGACATCTGAATATCATTGTGGGTACTCACTCACTTCTCGGGAGCCGTGTTGTGTACA 1198
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 CTGGACATCTCAATATCATTGTGGGTACTCACTCACTTCTCGGGAGCCGTGTTGTGTACA 1223
Query 1199 GTAATTTAGGCCTCCTTGTGGTTGATGAGGAACAGAGATTTGGGGTCAAGCAGAAAGAAA 1258
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1224 GTAATTTAGGCCTCCTTGTGGTTGATGAGGAGCAGAGATTTGGGGTCAAGCAGAAAGAAA 1283
Query 1259 AGATAGCATCTTTCAAAACATCAGTGGATGTGCTTACATTATCCGCAACACCCATACCAA 1318
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1284 AGATTGCATCTTTCAAAACATCCGTGGATGTGCTTACATTGTCCGCAACACCCATACCAA 1343
Query 1319 GGACACTGTACTTAGCTTTGACTGGATTCCGGGATGCCAGTTTAATCTCCACACCGCCTC 1378
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1344 GGACACTGTACTTAGCTTTGACTGGATTCCGGGATGCTAGTTTAATCTCCACACCGCCTC 1403
Query 1379 CGGAGAGGATTCCAATAAAAACCCATCTTTCGTCATTCCGTAAGGAAAAGGTGATAGAAG 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1404 CGGAGAGGATTCCAATAAAAACCCATCTTTCGTCATTCCGTAAGGAAAAGGTGATTGAAG 1463
Query 1439 CAATAAAAAATGAGCTGGATCGTGGTGGCCAAGTTTTCTATGTCTTGCCTCGGATTAAAG 1498
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1464 CAATAAAAAATGAGCTGGATCGTGGTGGCCAAGTTTTTTATGTCTTGCCTCGGATTAAAG 1523
Query 1499 GACTAGAAGAAGTGATGGATTTTCTAGAAGAAGCATTTCCAGATATTGACATCGCTATGG 1558
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1524 GACTAGAAGAAGTGATGGATTTTCTTGAAGAAGCATTTCCAGATATTGACATTGCTATGG 1583
Query 1559 CACATGGAAAGCAATACTCGAAACAACTAGAGGAAACCATGGGGAGATTTGCGCAAGGAA 1618
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1584 CACATGGAAAGCAATACTCGAAACAACTAGAGGAAACCATGGAGAGATTTGCGCAAGGAA 1643
Query 1619 AGATCAAAATCCTCATATGTACTAATATTGTTGAAAGCGGACTTGATATTCAAAATGCAA 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1644 AGATCAAAATCCTCATATGTACTAATATTGTTGAAAGCGGACTTGATATTCAAAATGCAA 1703
Query 1679 ATACCATAATCATTCAGGATGTTCAACAATTTGGGCTCGCTCAGTTGTACCAGTTGCGTG 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1704 ATACCATAATCATTCAGGATGTTCAACAATTTGGGCTCGCTCAGTTGTACCAGTTGCGTG 1763
Query 1739 GAAGGGTTGGTCGGGCAGATAAAGAAGCTCATGCCTACCTATTTTATCCCGATAAATCGC 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1764 GAAGGGTTGGTCGGGCAGATAAAGAAGCTCATGCCTACCTATTTTATCCCGATAAATCGC 1823
Query 1799 TTCTCTCTGATCAAGCACTGGAAAGGCTTAGCGCTCTTGAAGAGTGCCGTGAACTTGGAC 1858
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1824 TGCTCTCTGATCAAGCACTGGAAAGGCTTAGCGCTCTTGAAGAGTGCCGTGAACTTGGAC 1883
Query 1859 AAGGTTTCCAACTTGCAGAGAGGGATATGGGTATAAGAGGTTTTGGGACAATCTTTGGAG 1918
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1884 AAGGCTTCCAACTTGCAGAGAAGGATATGGGTATAAGAGGTTTTGGGACAATCTTTGGAG 1943
Query 1919 AACAACAGACGGGGGATGTTGGAAATGTCGGTATCGATCTCTTCTTTGAAATGCTTTTTG 1978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1944 AACAACAGACGGGGGATGTTGGAAATGTCGGTATCGATCTCTTCTTTGAAATGCTTTTTG 2003
Query 1979 AGAGTCTGTCCAAGGTGGAGGAACTCCGTATTTTTTCGGTTCCATATGACCTAGTGAAGA 2038
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2004 AGAGTCTCTCCAAGGTGGAGGAACTCCGTATTTTTTCGGTTCCATATGACCTCGTGAAGA 2063
Query 2039 TTGACATAAATATAAATCCCCGGCTACCCTCGGAGTATGTAAATTACCTGGAAAATCCGA 2098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2064 TTGACATAAATATAAATCCCCGGCTACCCTCGGAGTATGTAAATTACCTGGAAAATCCGA 2123
Query 2099 TGGAGATCATTAATGAAGCTGAAAAAGCAGCGGAGAAAGATATGTGGAGTCTAATGCAAT 2158
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2124 TGGAGATCATTCATGAAGCTGAAAAAGCAGCAGAGAAAGATATGTGGAGTCTAATGCAAT 2183
Query 2159 TCACAGAGAACCTGCGTCGCCAATATGGGAAAGAGCCTTACTCCATGGAGATCATTTTAA 2218
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2184 TTACAGAGAACCTGCGTCGCCAATATGGGAAAGAGCCTTACTCCATGGAAATCATTTTAA 2243
Query 2219 AGAAGCTGTATGTGAGACGCATGGCGGCTGATCTTGGAGTAAACAGAATTTATGCATCAG 2278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2244 AGAAGCTGTATGTGAGACGCATGGCGGCTGATCTTGGAGTAAACAGAATTTATGCATCAG 2303
Query 2279 GCAAGATGGTTGTCATGAAAACAAATATGAGTAAGAAGGTGTTCAAGCTGATCACAGATT 2338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2304 GCAAGATGGTTGTCATGAAAACAAATATGAGTAAGAAGGTGTTCAAGCTGATCACAGATT 2363
Query 2339 CCATGACTTGTGACGTTTACCGAAGCTCCTTGATATACGAAGGAGATCAAATAATGGCGG 2398
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2364 CCATGACTTGTGACGTTTACCGAAGCTCCTTGATATATGAAGGAGATCAAATAATGGCGG 2423
Query 2399 AACTTCTGCTGGAGCTACCAAGAGAACAGTTACTGAACTGGATGTTCCAGTGCTTGTCAG 2458
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2424 AACTTCTGTTGGAGCTACCAAGAGAACAGTTACTGAACTGGATGTTCCAGTGCTTGTCAG 2483
Query 2459 AACTTCATGCATCACTTCCTGCCCTTATCAAATATTAGTTCCCCCTTCTCAGTTTCTCTT 2518
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 2484 AACTTCATGCATCACTTCCTGCTCTTATCAAATATTAGTTCCCCCTTGTCAGTTTCTCTT 2543
Query 2519 GCTTGTAGGATGTGTTAAAAGAAGAGAGACTCC-TCAGCACTTGTGTTGCTGTGAAGTTT 2577
|| || | | | ||| |||||||||| || |||||| |||||||||||||||| ||
Sbjct 2544 GC--GT-G--T-T---AAAGGAAGAGAGACGCCCTCAGCAATTGTGTTGCTGTGAAGCTT 2594
Query 2578 TCTTCATAGAATAGAACAGAAGAGAGGAGAATAATATTTGCCTAAATATCTACAAGGGCA 2637
|||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2595 TCTTCACAGAATAGAAGAGAAGAGAGGAGAATAATATTTGCATAAATATCTACAAGGGCA 2654
Query 2638 GCATTTTAATCAGCAGCTACACACACTT 2665
|||||||||| ||||||||| |||||||
Sbjct 2655 GCATTTTAATGAGCAGCTACCCACACTT 2682
Score = 86.1 bits (46), Expect = 2e-15
Identities = 46/46 (100%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 2735 GAACATAATTGTTTATGGCTCAGTAAAAAGCCCATTTAGATGTCCT 2780
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2872 GAACATAATTGTTTATGGCTCAGTAAAAAGCCCATTTAGATGTCCT 2917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 138109594079
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5