BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477306
Length=2622
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02050.1 | Symbols: KUP3, ATKUP3, ATKT4 | K+ uptake transpor... 4026 0.0
> AT3G02050.1 | Symbols: KUP3, ATKUP3, ATKT4 | K+ uptake transporter
3 | chr3:350616-354345 FORWARD LENGTH=2779
Length=2779
Score = 4026 bits (2180), Expect = 0.0
Identities = 2491/2639 (94%), Gaps = 29/2639 (1%)
Strand=Plus/Plus
Query 1 GAGGAAACTTGCTAATCGGAGAAAGGAGTGAGTGGATGAGAGAAAAAGATACAAAGGTTC 60
||||||| |||||||||||||||| |||||||||| |||||| | ||||| ||||||||
Sbjct 1 GAGGAAAATTGCTAATCGGAGAAACAAGTGAGTGGAGGAGAGAGACAGATATAAAGGTTC 60
Query 61 CCGCGTT--GAGAGTATCAATTAATTAATTAAGGTGGATATTTGA--CAAATAGAGAATC 116
||||||| |||||||| |||||||||||||||||||||||| | | |||| |
Sbjct 61 CCGCGTTGAGAGAGTATTTGCTAATTAATTAAGGTGGATATTTGATGCTAGGAGAGGA-G 119
Query 117 ATTAGAGAGATAAGATGGGTTTCGTTTGAAGAGCTCCAACCTGATTCGCTCAATTGA--T 174
| | ||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
Sbjct 120 AGT-GAGAGATAAGATGGGTTTCGTCTGAAGAGCTCCAACTTGATTCGCTCAATTGATCT 178
Query 175 C-TTTGTATCGACAACCTGAGATGGCGGCGGCGGAATCTGGAGTCTCTCCCCGTCGAAAT 233
| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||
Sbjct 179 CTTTTGTATCGACAACCTGCGATGGCGCCGGCGGAATCTGGAGTCTCTCCCCGTCGGAAT 238
Query 234 CCTTCACAACTGTCGTGGATG---------AGTAACTTGATTTTGGCCTACCAGAGCTTT 284
||||| ||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 239 CCTTCTCAACTCTCGTGGATGAATCTCTCTAGTAACTTGATTTTGGCCTACCAGAGCTTT 298
Query 285 GGTGTAGTCTACGGTGACCTCAGTACATCTCCTCTTTATGTCTTCCCTTGCACATTTATT 344
||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||
Sbjct 299 GGTGTAGTCTACGGTGATCTCAGTACTTCTCCTCTTTATGTCTTCCCTAGCACATTTATT 358
Query 345 GGAAAGTTGCACAAGCATCACAACGAGGAAGCCGTTTTTGGTGCTTTCTCTTTGATTTTC 404
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 359 GGAAAGTTGCACAAGCATCACAACGAGGATGCCGTATTTGGTGCTTTCTCTTTGATTTTC 418
Query 405 TGGACCCTCACGCTCTTTCCCCTTCTCAAATACCTTCTTGTATTACTGAGTGCCGATGAC 464
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TGGACCCTCACGCTCATTCCCCTTCTCAAATACCTTCTTGTATTACTGAGTGCCGATGAC 478
Query 465 AACGGAGAAGGCGGAACATTTGCTCTCTATTCGCTGCTTTGTAGGCATGCCAAGCTTAGC 524
|| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 479 AATGGAGAAGGCGGAACATTTGCTCTCTATTCCCTGCTTTGTAGGCATGCTAAGCTTAGC 538
Query 525 TTACTTCCTAACCAGCAAGCTGCTGATGAGGAGCTCTCAGCTTACAAGTTTGGTCCTTCC 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTACTTCCTAACCAGCAAGCTGCTGATGAGGAGCTCTCAGCTTACAAGTTTGGTCCTTCC 598
Query 585 ACGGATACTAG-AACTTCATCCCCCTTCAGAAGATTTCTTGAAATGCACAAAAGGCTGAG 643
||||||||| | |||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 599 ACGGATACT-GTAACTTCATCCCCCTTCAGAACATTTCTTGAAAAGCACAAAAGGCTGAG 657
Query 644 GACCGCTTTGCTGCTTCTTGTACTTTTTGGAGCTGCTATGGTCATAGGAGACGGGGTTCT 703
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 658 GACCGCTTTGCTGCTTGTTGTACTTTTTGGAGCTGCTATGGTCATTGGAGACGGGGTTCT 717
Query 704 GACCCCAGCTATATCAGTTCTGTCGTCCATGTCTGGCTTGCAAGCTACAGATAAGAAAT- 762
|||||||||| ||||||||||||||||| |||| ||||||||||||||||| ||| |||
Sbjct 718 GACCCCAGCTTTATCAGTTCTGTCGTCCTTGTCAGGCTTGCAAGCTACAGAGAAG-AATG 776
Query 763 TGACTGATGGTGAACTTCTGGTACTTGCCTGTGTCATATTGGTCGGACTGTTTGCTTTGC 822
|||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 777 TGACTGATGGCGAACTACTGGTGCTTGCCTGTGTCATATTGGTCGGACTGTTTGCTTTGC 836
Query 823 AACACTGTGGTACTCACAGGGTGGCTTTCATGTTTGCACCAATTGTGATCATCTGGCTTA 882
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AACATTGTGGTACTCACAGGGTGGCTTTCATGTTTGCACCAATTGTGATCATCTGGCTTA 896
Query 883 TTTCAATACTCTTCATCGGTTTATACAACATCTTACACTGGAATCCAACGATAATACATG 942
|||||||| ||||||||||||||||||||||| | | |||||||||| |||||||||||
Sbjct 897 TTTCAATATTCTTCATCGGTTTATACAACATCATCCGTTGGAATCCAAAGATAATACATG 956
Query 943 CAATTTCCCCGCTTTATATCATCAAATTCTTCAGAGTGACTGGTCAAGATGGATGGATTT 1002
|| ||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 957 CAGTTTCCCCACTGTATATCATCAAATTCTTCAGAGTGACTGGTCAAGATGGATGGATAT 1016
Query 1003 CTCTTGGAGGGATTCTTCTTTCTGTAACAGGTACTGAAGCTATCTTTGCAAATCTTGGCC 1062
||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1017 CTCTTGGAGGGGTTCTTCTTTCTGTAACAGGTACTGAAGCCATGTTTGCAAATCTTGGCC 1076
Query 1063 ATTTCACCTCGGTCTCAATCAGACTTGCTTTCGCCGTTGTCGTGTACCCCTGTCTGGTGG 1122
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1077 ATTTCACCTCGGTCTCAATCAGAGTTGCTTTCGCCGTTGTCGTGTACCCCTGTCTGGTGG 1136
Query 1123 TACAATACATGGGCCAGGCAGCTTTCTTGTCAAAGAACCTCGGGTCTATTCCTAACAGTT 1182
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1137 TACAATACATGGGCCAGGCAGCTTTCCTGTCAAAGAACCTCGGGTCTATTCCTAACAGTT 1196
Query 1183 TTTACGATTCAGTCCCAGACCCTGTTTTCTGGCCTGTCTTTGTCATTGCCACACTTGCAG 1242
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TTTACGATTCAGTCCCAGATCCTGTTTTCTGGCCTGTCTTTGTCATTGCCACACTTGCAG 1256
Query 1243 CCATTGTTGGCAGTCAGGCTGTGATAACCGCTACGTTCTCAATAGTCAAGCAATGCCATG 1302
||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||
Sbjct 1257 CCATTGTTGGCAGTCAGGCTGTGATAACCACTACGTTCTCAATAATCAAACAATGCCATG 1316
Query 1303 CCCTTGGGTGCTTCCCACGCATCAAAGTAGTCCATACTTGGAAACATATATATGGACAGA 1362
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1317 CCCTAGGGTGCTTCCCACGCATCAAAGTAGTCCATACTTCGAAACATATATATGGACAGA 1376
Query 1363 TCTATATCCCGGAGATCAACTGGATCCTGATGATCCTTACTCTTGCAATAACTATAGGCT 1422
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1377 TCTATATCCCGGAGATCAACTGGATCCTGATGATCCTTACTCTTGCAATGGCTATAGGCT 1436
Query 1423 TTCGAGACACAACTTTGATTGGAAATGCCTACGGAATCGCATGCATGATGGTAATGTTCA 1482
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1437 TTCGAGACACAACTTTGATTGGAAATGCCTACGGAATCGCATGCATGGTAGTAATGTTCA 1496
Query 1483 TCACAACGTTTTTCATGTCTCTTGTCATAGTCGTGGTTTGGCAGAAGAGTTGTTTTCTGG 1542
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1497 TCACAACGTTTTTCATGGCTCTTGTCATAGTCGTGGTTTGGCAAAAGAGTTGTTTTCTGG 1556
Query 1543 CGGCGTTGTTTCTTGGGACTCTATGGATAATTGAAGGTGTGTACCTCTCAGCAGCGCTCA 1602
|||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1557 CGGCTTTGTTTCTTGGAACTCTATGGATAATTGAAGGTGTCTACCTCTCAGCAGCGCTAA 1616
Query 1603 TGAAAGTTCCCCAGGGTGGTTGGGTGCCTTTTGTGCTCACGTTCATATTTATGATCGCCA 1662
|||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 TGAAAGTTACCGAGGGAGGTTGGGTGCCTTTTGTGCTCACGTTCATATTTATGATCGCCA 1676
Query 1663 TGTATGTGTGGCACTATGGCACCCGCAGGAAATACAGCTTTGATCTTCATAACAAAGTTT 1722
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1677 TGTATGTGTGGCACTATGGCACCCGTAGGAAATACAGCTTTGATCTTCATAACAAAGTTT 1736
Query 1723 CATTGAAGTGGTTACTGGGATTAGGACCTAGTCTTGGTATTGTCCGCGTGCCTGGAATAG 1782
||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1737 CATTGAAGTGGTTGCTGGGATTAGGACCTAGTCTAGGTATTGTCCGCGTTCCTGGAATAG 1796
Query 1783 GACTCGTATACTCAGAACTTGCAACTGGAGTTCCTGCAATTTTCTCGCACTTTGTCACCA 1842
||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1797 GACTCGTTTACTCAGAACTTGCAACTGGAGTTCCTGCAATTTTCTCTCACTTTGTGACCA 1856
Query 1843 ACCTCCCGGCATTCCATAAAGTCGTGGTGTTTGTTTGTGTGAAATCAGTTCCAGTGCCTC 1902
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 ACCTGCCTGCATTCCATAAAGTCGTGGTGTTTGTTTGTGTGAAATCAGTTCCAGTGCCTC 1916
Query 1903 ATGTTTCCCCTGAGGAACGCTTCCTCATTGGTCGTGTTTGCCCGAAGCCTTATCGTATGT 1962
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1917 ATGTTTCCCCTGAGGAACGCTTCCTCATTGGTCGAGTTTGCCCGAAGCCTTATCGTATGT 1976
Query 1963 ACAGGTGCATAGTGAGGTACGGGTACAAGGACATTCAACGGGAAGACGGGGACTTTGAGA 2022
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1977 ACAGGTGCATAGTGAGGTACGGTTACAAGGACATTCAACGGGAAGACGGGGACTTTGAGA 2036
Query 2023 ATCAGCTTGTACAGAGCATAGCGGAGTTCATCCAGATGGAAGCAAGCGACCTCCAATCCT 2082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2037 ATCAGCTTGTACAGAGCATAGCGGAGTTCATCCAGATGGAAGCAAGCGACCTCCAATCCT 2096
Query 2083 CGGCTTCTGAGTCTCAATCTTATGATGGGAGAATGGCCGTTTTAAGCAGCCAGAAGAGTG 2142
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 2097 CGGCTTCTGAGTCTCAATCTAATGATGGGAGAATGGCCGTTCTAAGCAGCCAGAAGAGTC 2156
Query 2143 GCTCTAACTCAATCCTGACGGTTTCAGAGGTAGAGGAGATTGATTTTGCTGACCCCACGA 2202
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2157 TCTCTAACTCAATCCTGACGGTTTCAGAGGTAGAGGAGATTGATTATGCTGACCCCACGA 2216
Query 2203 TACAAAGCAGTAAATCCATGACTCTGCAGAGTTTGCGTTCAGTGTACGAGGATGAGTATC 2262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2217 TACAAAGCAGTAAATCCATGACTCTGCAGAGTTTGCGTTCAGTGTACGAGGATGAGTATC 2276
Query 2263 TGCAAGGGCAAGTGAGGAGGCGGCATGTGAGGTTCCAGTTAACGCCGTCAAGTGCTGGGA 2322
||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||
Sbjct 2277 CGCAAGGGCAAGTGAGGAGGAGGCATGTGAGGTTCCAGTTAACGGCGTCAAGTGGTGGGA 2336
Query 2323 TGGAGTCCTCTGTGAGGGAAGAACTAATGGATCTGATACGGGCGAAAGAGGCGGGTGTTG 2382
||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2337 TGGGGTCCTCAGTGAGGGAAGAGCTAATGGATCTGATACGGGCGAAAGAGGCGGGTGTTG 2396
Query 2383 CATATATAATGGGCCACTCATATGTGAAATCGAGGAAATCCTCGTCCTGGTTGAAGAAGA 2442
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 2397 CATATATAATGGGCCACTCGTATGTGAAATCGAGGAAATCCTCGTCTTGGTTGAAGAAGA 2456
Query 2443 TGACGATTGATATCGGCTATTCTTTCCTGAGGAAGAACTGCAGAGGGCCAGCTGTCGCAC 2502
|| |||| || ||||| ||||||||| ||||||||||||||||||||||||| || ||||
Sbjct 2457 TGGCGATAGACATCGGTTATTCTTTCTTGAGGAAGAACTGCAGAGGGCCAGCCGTAGCAC 2516
Query 2503 TCAACATTCCTCACATCAGCCTCATTGAAGTTGGCATGATATACTATGTTTAAGCCAATA 2562
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 2517 TCAACATTCCTCACATCAGCCTCATTGAAGTTGGCATGATTTACTATGTTTAAGCCACTA 2576
Query 2563 AGAACTCGTATGTGTGGCATTCGTAATTCATAGGAGGAATAATGGGAACAATCTGTTCA 2621
| | | | | || | ||||| |||||||| || ||||||||||||||||||| ||||
Sbjct 2577 ATA--T-G-A-GTA-G-CATTCATAATTCATGGGGGGAATAATGGGAACAATCTATTCA 2628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130183217085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5