BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477308
Length=2657
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02030.1 | Symbols: | transferases, transferring acyl group... 1336 0.0
AT3G02040.1 | Symbols: SRG3 | senescence-related gene 3 | chr3:... 649 0.0
> AT3G02030.1 | Symbols: | transferases, transferring acyl groups
other than amino-acyl groups;acyltransferases | chr3:344908-348847
FORWARD LENGTH=2641
Length=2641
Score = 1336 bits (723), Expect = 0.0
Identities = 809/849 (95%), Gaps = 12/849 (1%)
Strand=Plus/Plus
Query 859 ATCCTAGCTGATACATTTCGGAGAGAAACACTTCTGTGGAAGCTCAAGTTGCTTGATGCC 918
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 891 ATCCTAGCTGATACATTTCGGAGAGAAACTCTTCTGTGGAAGCTCAAGTTGCTTGATGCC 950
Query 919 GCTGCTATTTTTGCCAATGCACATCTACATCTAGTACAAGCGCAGACTCTAATTCTGTCC 978
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 951 GCTGCTATTTTTGCCAATGCACATCTACATCTAGTACAAGCTCAGACTCTAATTCTGTCC 1010
Query 979 AGTGGAAATGACCAAATCCTACCCAGTAAATTTGAAGGCAAACGACTTCGGAAAAAACTA 1038
|| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1011 AGCGGAAATGACCAAATACTACCCAGTAAATATGAAGGCAAACGACTTCGGAAAAAACTG 1070
Query 1039 CCTAAATGTGAAGTCCGCTCATTCAAAGACAACGGGCATTGCCTTTTTCTGGAGGACGGC 1098
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1071 CTTAAATGTGAAGTCCGCTCATTCAAAGACAACGGCCATTGCCTTTTTCTGGAGGACGGC 1130
Query 1099 ATTGATCTGGTCAGTATCATAAAAGCCACTTCTTTTTACCGGCGTGGGTCTCGCCAGGAT 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1131 ATTGATCTGGTCAGTATCATAAAAGCCACTTCTTTTTACCGGCGTGGGTCTCGTCAGGAT 1190
Query 1159 TACGTCTCCGACTACATCCCACCAACCATCTCTGAATTTAACAAAAGTTATGGGGTTAAC 1218
||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||
Sbjct 1191 TACGTCTCCGACTACATCCCACCAACCATCTCTGAGTTTAACAAAAGTTATGGGATCAAC 1250
Query 1219 AGGCTTCTTGAGGTGATCATGGGACCTGTATTTCTGTCGACGACAAAAGATGGGAAAGTG 1278
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1251 AGGCTTCTTGAGGTGATCATGGGCCCTGTATTTCTGTCGACGACAGAAGATGGGAAAGTG 1310
Query 1279 GTGAGGGGTCTTGGGGGAATACCATCGGAAGGACCTGTACTGTTGGTGGGCAATCACATG 1338
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1311 GTGAGGGGTCTTGGGGGAATTCCATCAGAAGGACCTGTACTGTTGGTGGGCAATCACATG 1370
Query 1339 CTACTGGCGAGTGACAAAATATCACTCCCAGGTCAATTTGTTCACGAGAGGAACATCAAT 1398
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1371 CTACTGGCGAGTGACAAAATATCACTCCCAGGACAATTTGTTCACGAGAGGAACATCAAT 1430
Query 1399 TTGCGGCCTCTTGTGCATCCCATGATGTTTACGAGACTGAGAGATGGATTGTTACCTGAT 1458
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1431 TTGCGGCCTCTTGTGCACCCCATGATGTTTTCGAGACTGAGAGATGGATTGTTACCTGAT 1490
Query 1459 GTGTCTGTTTACGACATGCTCAGGATGATGGGGTCGGTCCCCATCTCGGGCACGCACCTC 1518
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1491 GTGTCTGTTTATGACATGCTCAGGATGATGGGGTCGGTCCCCATCTCGGGCACTCACCTC 1550
Query 1519 CATAATCTCTTGTCTGCTAAATCCCATATTCTGTTGTTCCCAGGAGGCATCCGCGAAGCT 1578
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1551 CATAATCTCTTGTCTGCTAAATCCCATATTCTGTTGTTTCCAGGAGGCATCCGCGAAGCT 1610
Query 1579 CTACACCGTAAGGGAGAAGAATACAAGTTGATGTGGCCAGAGAAGGCAGAGTTTGTGAGA 1638
||||||| || ||||||||||||||||||||||| ||||||||||| |||
Sbjct 1611 CTACACC--AA----------TACAAGTTGATGTGGCCAGAGAAAGCAGAGTTTGTTAGA 1658
Query 1639 GCAGCAGCCAAATTTGGAGCCAAAATAGTGCCCTTTTGTGGGGTTGGCGAAGATGATTTT 1698
|| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1659 GCTGCAGCCAAATTTGGAGCCAAAATAGTCCCCTTTTGTGGGGTTGGGGAAGATGATTTT 1718
Query 1699 TTAAGAGTG 1707
|||| ||||
Sbjct 1719 TTAAAAGTG 1727
Score = 1258 bits (681), Expect = 0.0
Identities = 777/823 (94%), Gaps = 8/823 (1%)
Strand=Plus/Plus
Query 1 CTCCATGGACGCACCACCTCAGCAACTACTAGCTTCTTCTTT-CCCATGGCGGCCACCGG 59
||||||||||| |||||| || | |||||||||||| ||||| || ||||||||||||||
Sbjct 72 CTCCATGGACGAACCACCACAACTACTACTAGCTTC-TCTTTGCCTATGGCGGCCACCGG 130
Query 60 ATTTCACATGCTCTCTGCCGTCGGATTATGCAACGGAGAGAAGCACAAGCAACTTCTTGG 119
|||||||| |||||||||||||||||||| ||||||||||||||||||||| | |||||
Sbjct 131 ATTTCACACGCTCTCTGCCGTCGGATTATTCAACGGAGAGAAGCACAAGCACCCCCTTGG 190
Query 120 TGTAACCCTACCACCGGCACGCCGATTCTCCGCTTCTGTCACCGCTTTTAGCTCGAGGCT 179
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 191 AGTAACCCTACCCCCGGCACGCCGATTCTCCGCTTCTGTCACCGTTTTTAGCTCGAGGCT 250
Query 180 TGTGGACTACGAGCAGCCATTCGTTAAGGGCTTCTGGGAA-TACCTCGAGGCGGCTAAGG 238
|||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||
Sbjct 251 TGTGGACTACGAGCAGCCATTCGTTAAGAGCTTCT-GGAACTACCTCGAGGCGGCTAAGG 309
Query 239 ATTTCATCAGACCGGAAGACAACAGCCCGTCTCGCTGGTTCTCTCCCCTCGAAAAAAGCA 298
||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||
Sbjct 310 ATTTCATCAGACCGGAAGACAACGGCCCATCTCGCTGGTTCTCTCCCCTCGAAAGAAGCA 369
Query 299 AGGATCCATGTGACGGCGCCCCGCTGCTTCTGTTCCTACCTGGTATCGACGGAAATGGAC 358
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 370 AGGATCCATGTGACGGTGCCCCGCTCCTTCTCTTCCTACCTGGTATCGACGGAAATGGAC 429
Query 359 TCGGGCTAATAAGGCAGCACCAGAAACTTGGACAGATGTTTGATATCTGGTGCTTGCACA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 TCGGGCTAATAAGGCAGCACCAGAAACTTGGACAGATGTTTGATATCTGGTGCTTGCACA 489
Query 419 TACCAGCGAGCAATCGCACTTCATTCACAGATCTAGTCGCCATGGTTGAAAGAACTGTCA 478
||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||
Sbjct 490 TACCAGCGAGCAATCGCTCTTCTTTCACAGATCTAGTCGCCATGGTTGAAACAACTGTCA 549
Query 479 AATCTGAAAATCAACGATCACCCGGGAAACCCATATATCTTGTTGGAGAATCTCTCGGCG 538
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 550 AATATGAAAATCAACGATCACCTGGGAAACCCATATATCTTGTTGGAGAATCTCTCGGCG 609
Query 539 CCTGCATAGCACTCGCTGTTGCTGCCTGTAACCCTGAAATTGATCT-GCTCTTGATTCTT 597
||||||| |||||||||||||| |||||||||||||| |||||||| | |||||||||||
Sbjct 610 CCTGCATTGCACTCGCTGTTGCAGCCTGTAACCCTGATATTGATCTTG-TCTTGATTCTT 668
Query 598 TCAAACCCAGCTACATCATATGGGAATTCTTTC-CTGCAACATCTTGCTCCCCTGGTTAA 656
|| |||||||||||||||| |||| |||||| | ||||||||||||||||||||||||||
Sbjct 669 TCTAACCCAGCTACATCATTTGGGCATTCTT-CGCTGCAACATCTTGCTCCCCTGGTTAA 727
Query 657 AGCCTTGCCAGACCAATTTGATCTTGCATTTCCTTCCGTGTTAAGCTTGATTCCAGGTGG 716
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 728 AGCCTTGCCAGACCAACTTAATCTTGCATTTCCTTCCGTGCTAAGCTTGATTCCAGGTGG 787
Query 717 CCCTTTAAAAAGGATGGTTGCTCACTGGGTCAGGGGACTTCCGGAGATGGAAACAGCTGC 776
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 788 CCCTTTAAAAAGGATGGTTGCTCACTGGGTCAGAGGACTTCCGGAGACGGAAACAGCTGC 847
Query 777 AAACATTTTTCAAGATTTGGTGATAACATCGACATTAACTTCT 819
|||||||||||||||||||||||||||||| |||||||| |||
Sbjct 848 AAACATTTTTCAAGATTTGGTGATAACATCCACATTAACCTCT 890
Score = 649 bits (351), Expect = 0.0
Identities = 454/500 (91%), Gaps = 21/500 (4%)
Strand=Plus/Plus
Query 2170 TCATAGCCCGTATGCAAACAGTTATATCCCATAACATTTGGGCTTT----TCAT--CTCA 2223
||||| ||||| ||||||||| ||||| |||||||||||||||||| |||| |||
Sbjct 2150 TCATAACCCGTCTGCAAACAGATATATTCCATAACATTTGGGCTTTCACCTCATGAATCA 2209
Query 2224 TGA-A--TG-ACCCACATTGTCAAATTTCCCCTAAAC-AAACACTATCACAATTTTGGGA 2278
||| | | |||||||||||||||||| ||| | || |||||||||||| |||||||||
Sbjct 2210 TGATAGCAGCACCCACATTGTCAAATTTTCCCGATACAAAACACTATCAC-ATTTTGGGA 2268
Query 2279 AACTAGAGATCCTAACTAAACGAGATAAGAGTTGGTTTTAGTGTTGTATCAACTCAGGAA 2338
|||||||||||||||||||| || ||| | ||||||||||||||||||||| ||||
Sbjct 2269 AACTAGAGATCCTAACTAAA--AG---AGA--TAGTTTTAGTGTTGTATCAACTCGGGAA 2321
Query 2339 TGAGCTTGAGAAGAAAAGAGAGCTCTCTCTCAGAGAAGTTAGGCTTTGGCTTAGTATCAT 2398
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 2322 TGAGCTTGAGAAGAAAGGAGAGCTCTCTGTCAGAGAAGTTAGGCTTTGGCTTAGTACCAT 2381
Query 2399 CAGCATCTCTGTTGGATGGCTTCATCATCTCTCTCACGGCCTCTGTTATCTCCTCTACAT 2458
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 2382 CAGCATCTCTGTTGGATGGCTTCATCATCTCCCTCACCGCCTCTGTTATCTCCTCCACAT 2441
Query 2459 GATCAACTATGACTCCCTCTATTCCCATCAAATGCTGCATGTAAACCGCCTCCGCAACAT 2518
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 2442 GATCAACTATCACTCCCTCTATCCCCATCAAATGCTGCATGTAAACCGCCTCGGCTACAT 2501
Query 2519 TGTTGAGCTTTCCGTAGGTCATCAGAGAGAGCTTGGATTCTTTTATCTTGTTGAC-AGCA 2577
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 2502 TGTTTAGCTTTCCGTATGTCATCAGAGAGAGCTTGGATTCTTTTATCTTGTTGACAAG-A 2560
Query 2578 GCGGGGTTGCGGAATACTCCCTTCACCTCCGAGACAATCCCTTGAAGGCCTCCTTCTAAA 2637
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2561 GCGGGGTTGCGGAATACTCCCTTCACCTCCGAGACAATCCCTTGGAGGCCTCCTTCTAAA 2620
Query 2638 CATAATTTGATTGCTTCCTC 2657
|||| |||||||||||||||
Sbjct 2621 CATACTTTGATTGCTTCCTC 2640
Score = 636 bits (344), Expect = 0.0
Identities = 382/400 (96%), Gaps = 4/400 (1%)
Strand=Plus/Plus
Query 1772 GTGGTTGTAGACTACAATGACCAGATAAAGGTCCCGTTGGTGAAAGAGGTGCTAAAAAGA 1831
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1725 GTGGTCGTAGACTACAATGACCAGATAAAGGTTCCGTTGGTGAAAGAGGTGCTAAAAAGA 1784
Query 1832 GTGACAGCGGAAGGCCCGGAGGTTAGGGGAAGTCTGGAAGGAGAAGAGGGGAACCAAGAC 1891
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1785 GTGACAGCGGAAGGCCCGGAGGTGAGGGGAAGCCTGGAAGGAGAAGAGGGGAACCAAGAC 1844
Query 1892 TTCCACATGCCAGGAGTGATACCAAAGTGGCCAGGGAGATACTATTATTACTTTGGGAAG 1951
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1845 TTCCACATGCCAGGAGTGATACCAAAGTGTCCAGGGAGATACTATTATTACTTTGGGAAG 1904
Query 1952 GAGATAAAGACGGGAGCAGAAGAGTTGAGAGACAGAGACAAGGCAAAGGAGGTGTACGCA 2011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1905 GAGATAAAGACGGGAGCAGAAGAGTTGAGAGACAGAGACAAGGCAAAGGAGGTGTACGCA 1964
Query 2012 GAGGTGAAGAAAGAGGTCGAGAGATGCATAAAGTTTGTGAAGCAGAGAAGGGAGGAGGAT 2071
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1965 GACGTGAAGAAGGAGGTCGAGAGATGCATAAAGTTTGTGAAGCAGAGAAGGGAGGAGGAT 2024
Query 2072 CTCT-ACAGACCCCTCTTGCCCCGTCTCCACTATCACCTGCAGCATGGCCTCCTCTCGCA 2130
| || ||||||| ||||||||||||||| | |||||||||||||| ||||||||||| ||
Sbjct 2025 C-CTTACAGACCTCTCTTGCCCCGTCTCAAATATCACCTGCAGCACGGCCTCCTCTCCCA 2083
Query 2131 AGTCCCCACTTTCC-CTTTTTGAATACTTTTACACAATTT 2169
|||||||||||||| ||||| |||||| |||||| |||||
Sbjct 2084 AGTCCCCACTTTCCACTTTT-GAATACATTTACATAATTT 2122
> AT3G02040.1 | Symbols: SRG3 | senescence-related gene 3 | chr3:348167-350010
REVERSE LENGTH=1525
Length=1525
Score = 649 bits (351), Expect = 0.0
Identities = 454/500 (91%), Gaps = 21/500 (4%)
Strand=Plus/Minus
Query 2170 TCATAGCCCGTATGCAAACAGTTATATCCCATAACATTTGGGCTTT----TCAT--CTCA 2223
||||| ||||| ||||||||| ||||| |||||||||||||||||| |||| |||
Sbjct 1336 TCATAACCCGTCTGCAAACAGATATATTCCATAACATTTGGGCTTTCACCTCATGAATCA 1277
Query 2224 TGA-A--TG-ACCCACATTGTCAAATTTCCCCTAAAC-AAACACTATCACAATTTTGGGA 2278
||| | | |||||||||||||||||| ||| | || |||||||||||| |||||||||
Sbjct 1276 TGATAGCAGCACCCACATTGTCAAATTTTCCCGATACAAAACACTATCAC-ATTTTGGGA 1218
Query 2279 AACTAGAGATCCTAACTAAACGAGATAAGAGTTGGTTTTAGTGTTGTATCAACTCAGGAA 2338
|||||||||||||||||||| || ||| | ||||||||||||||||||||| ||||
Sbjct 1217 AACTAGAGATCCTAACTAAA--AG---AGA--TAGTTTTAGTGTTGTATCAACTCGGGAA 1165
Query 2339 TGAGCTTGAGAAGAAAAGAGAGCTCTCTCTCAGAGAAGTTAGGCTTTGGCTTAGTATCAT 2398
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1164 TGAGCTTGAGAAGAAAGGAGAGCTCTCTGTCAGAGAAGTTAGGCTTTGGCTTAGTACCAT 1105
Query 2399 CAGCATCTCTGTTGGATGGCTTCATCATCTCTCTCACGGCCTCTGTTATCTCCTCTACAT 2458
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 1104 CAGCATCTCTGTTGGATGGCTTCATCATCTCCCTCACCGCCTCTGTTATCTCCTCCACAT 1045
Query 2459 GATCAACTATGACTCCCTCTATTCCCATCAAATGCTGCATGTAAACCGCCTCCGCAACAT 2518
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 1044 GATCAACTATCACTCCCTCTATCCCCATCAAATGCTGCATGTAAACCGCCTCGGCTACAT 985
Query 2519 TGTTGAGCTTTCCGTAGGTCATCAGAGAGAGCTTGGATTCTTTTATCTTGTTGAC-AGCA 2577
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 984 TGTTTAGCTTTCCGTATGTCATCAGAGAGAGCTTGGATTCTTTTATCTTGTTGACAAG-A 926
Query 2578 GCGGGGTTGCGGAATACTCCCTTCACCTCCGAGACAATCCCTTGAAGGCCTCCTTCTAAA 2637
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 925 GCGGGGTTGCGGAATACTCCCTTCACCTCCGAGACAATCCCTTGGAGGCCTCCTTCTAAA 866
Query 2638 CATAATTTGATTGCTTCCTC 2657
|||| |||||||||||||||
Sbjct 865 CATACTTTGATTGCTTCCTC 846
Score = 228 bits (123), Expect = 3e-58
Identities = 151/164 (92%), Gaps = 4/164 (2%)
Strand=Plus/Minus
Query 2008 CGCAGAGGTGAAGAAAGAGGTCGAGAGATGCATAAAGTTTGTGAAGCAGAGAAGGGAGGA 2067
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1525 CGCAGACGTGAAGAAGGAGGTCGAGAGATGCATAAAGTTTGTGAAGCAGAGAAGGGAGGA 1466
Query 2068 GGATCTCT-ACAGACCCCTCTTGCCCCGTCTCCACTATCACCTGCAGCATGGCCTCCTCT 2126
||||| || ||||||| ||||||||||||||| | |||||||||||||| ||||||||||
Sbjct 1465 GGATC-CTTACAGACCTCTCTTGCCCCGTCTCAAATATCACCTGCAGCACGGCCTCCTCT 1407
Query 2127 CGCAAGTCCCCACTTTCC-CTTTTTGAATACTTTTACACAATTT 2169
| |||||||||||||||| ||||| |||||| |||||| |||||
Sbjct 1406 CCCAAGTCCCCACTTTCCACTTTT-GAATACATTTACATAATTT 1364
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131939060090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5