BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477310
Length=619
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02000.1 | Symbols: ROXY1 | Thioredoxin superfamily protein ... 845 0.0
AT5G14070.1 | Symbols: ROXY2 | Thioredoxin superfamily protein ... 279 2e-74
> AT3G02000.1 | Symbols: ROXY1 | Thioredoxin superfamily protein
| chr3:332275-333022 REVERSE LENGTH=748
Length=748
Score = 845 bits (457), Expect = 0.0
Identities = 586/642 (91%), Gaps = 33/642 (5%)
Strand=Plus/Plus
Query 4 AAGAGAGATCAAAAATGCAATACCAGACAGAGTCGTGGGGATCATACAAGATGAACAGCT 63
|||||| |||||| ||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 87 AAGAGATATCAAAGATGCAATACCAGACAGAATCGTGGGGATCATACAAGATGAGCAGCT 146
Query 64 TAGGGTTCGGCGGTTTGGGGATGGTGGCTGACACTGGTCTGCTTCGCATAGAGTCGCTGG 123
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 147 TAGGATTCGGCGGTTTGGGGATGGTGGCTGACACTGGTCTGCTTCGTATAGAGTCCCTGG 206
Query 124 CGGCTGAGAGCGCGGTGGTGATCTTCAGCGTGAGCACGTGCTGCATGTGCCACGCCGTGA 183
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 CTTCTGAGAGCGCGGTGGTGATCTTCAGCGTGAGCACGTGCTGCATGTGCCACGCCGTGA 266
Query 184 AGGGTCTCTTCCGAGGAATGGGCGTCAGCCCCGCCGTCCACGAGCTCGACCTCCACCCCT 243
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 AGGGTCTCTTCAGAGGAATGGGCGTCAGCCCCGCCGTCCACGAGCTCGACCTCCACCCCT 326
Query 244 ACGGCGGCGACATCCAGCGAGCCCTCATTCGTCTTCTCGGCTGCTCCGGCTCCTCTTCTC 303
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 327 ACGGCGGCGACATCCAGCGAGCCCTCATTCGTCTCCTCGGCTGCTCCGGCTCCTCTTCTC 386
Query 304 CAGGGTCTCTTCCGGTCGTCTTCATCGGCGGCAAACTGGTTGGAGCTATGGACAGAGTCA 363
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 387 CAGGGTCTCTCCCGGTCGTCTTCATCGGCGGTAAACTGGTTGGAGCTATGGACAGAGTCA 446
Query 364 TGGCTTCTCACATCAACGGCTCTCTCGTTCCTCTCCTCAAAGACGCCGGAGCTCTCTGGC 423
||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 447 TGGCTTCTCACATAAACGGCTCTCTCGTTCCTCTTCTCAAAGACGCCGGCGCTCTCTGGC 506
Query 424 TCTGATCCCTCCCTCTGCTGt-ttttttCT-----A----A-G---------A-GA-A-T 460
|||||||||| |||||||| | |||||||| | | | | || | |
Sbjct 507 TCTGATCCCTTCCTCTGCTTTCTTTTTTCTTTTCTATTTGAAGTTTTCTTGTAAGAGAAT 566
Query 461 GTGGTGGAGGAAGCTCATTAGGAAACTAGTCAGTG-CTGTAATGGCAGGTTTTAGGTTAT 519
||||||||||||| |||||||||||||||| || |||||||| |||||||||| ||||
Sbjct 567 GTGGTGGAGGAAG---ATTAGGAAACTAGTCAATGGCTGTAATGACAGGTTTTAGATTAT 623
Query 520 AGCTTGTAATTAGAGAGAGAGTTGTTTTAAGCTCACCTTTCTCTGTCTCCCTCGCTCTTC 579
|| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 624 AGTTTGTAATTAGAGAGAGAGTTGTTTTAAGCTCACCTTTCTCTGTCT---TC-CTCTTC 679
Query 580 TTCATCTCTT-TA-ATCTTTCGAATGCTCTCATTAAATCATA 619
|||||||||| | ||||||||||||||||||||||||||||
Sbjct 680 TTCATCTCTTATTGATCTTTCGAATGCTCTCATTAAATCATA 721
> AT5G14070.1 | Symbols: ROXY2 | Thioredoxin superfamily protein
| chr5:4541836-4542514 FORWARD LENGTH=679
Length=679
Score = 279 bits (151), Expect = 2e-74
Identities = 269/326 (83%), Gaps = 8/326 (2%)
Strand=Plus/Plus
Query 111 ATAGAGTCGCTGGCGGCTGAGAGCGCGGTGGTGATCTTCAGCGTGAGCACGTGCTGCATG 170
||||||||| ||||||| |||| |||||||| || |||||||||||||| |||||||||
Sbjct 179 ATAGAGTCGATGGCGGCAGAGAATGCGGTGGTTATATTCAGCGTGAGCACTTGCTGCATG 238
Query 171 TGCCACGCCGTGAAGGGTCTCTTCCGAGGAATGGGCGTCAGCCCCGCCGTCCACGAGCTC 230
||||| ||| | ||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 239 TGCCATGCCATCAAGCGTCTCTTCCGTGGAATGGGCGTCAGCCCCGCCGTCCACGAGCTC 298
Query 231 GACCTCCACCCCTACGGCGGCGACATCCAGCGAGCCCTCATTCGTCTTCTCGGCTGCTCC 290
||||||| ||| ||||| | || ||||| ||||| ||| | ||||| || ||||| |||
Sbjct 299 GACCTCCTCCCTTACGGAGTTGAAATCCACCGAGCTCTCCTCCGTCTCCTTGGCTGTTCC 358
Query 291 GGC--T--C-CT-CTTCTCCAGGGTCTCTTCCGGTCGTCTTCATCGGCGGCAA-ACTGGT 343
|| | | | | ||||| ||| | |||||||| || |||||||| || || | ||||
Sbjct 359 AGCGGTGGCGCCACATCTCCGGGGGCACTTCCGGTGGTGTTCATCGGAGGGAAGA-TGGT 417
Query 344 TGGAGCTATGGACAGAGTCATGGCTTCTCACATCAACGGCTCTCTCGTTCCTCTCCTCAA 403
||||| ||||| ||||| |||||||| || ||||| ||||| ||||| ||||| |||||
Sbjct 418 AGGAGCAATGGAGAGAGTGATGGCTTCACATATCAATGGCTCACTCGTCCCTCTTCTCAA 477
Query 404 AGACGCCGGAGCTCTCTGGCTCTGAT 429
||| || || ||||| ||||||||||
Sbjct 478 AGATGCTGGCGCTCTTTGGCTCTGAT 503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29839083318
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5