BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477311
Length=1577
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01990.1 | Symbols: ACR6 | ACT domain repeat 6 | chr3:330137... 2342 0.0
> AT3G01990.1 | Symbols: ACR6 | ACT domain repeat 6 | chr3:330137-332262
FORWARD LENGTH=1617
Length=1617
Score = 2342 bits (1268), Expect = 0.0
Identities = 1440/1518 (95%), Gaps = 32/1518 (2%)
Strand=Plus/Plus
Query 1 ATCCTCCTTCACCTTCCCTCTCCCTCTCTCTTTTGGGAttttttttCCACAAAAATTGGA 60
||||||||||| |||||||||||||||||||||| ||| |||||| || ||||||||
Sbjct 1 ATCCTCCTTCAACTTCCCTCTCCCTCTCTCTTTTAGGA---ATTTTCCTCAGAAATTGGA 57
Query 61 GGACTCACACTTTCCAACTCTCTCTTCTGCTGCAGCCAAATCAACAAGGAGATACATACT 120
|||||||||| | | || | ||||||||||||||||||| ||||||||||||||||
Sbjct 58 GGACTCACAC--T-CTTCTGGGT-TTCTGCTGCAGCCAAATCACCAAGGAGATACATACT 113
Query 121 ACAACCATGGATGATGATGAATATGCCAAGCTCATCAGGAGAATGAATCCTCCCAGAGTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 ACAACCATGGATGATGATGAATATGCCAAGCTCATCAGGAGAATGAATCCTCCCAGAGTT 173
Query 181 GTAATAGACAACAACGCAAGCGACGATGCCACTGTTATTCAGGTTGATAGTGTCAACAAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 174 GTAATAGACAACAACGCAAGCGACGATGCCACTGTTATTCAGGTTGATAGTGTGAACAAA 233
Query 241 CATGGGACTCTGTTGGAAGTAGTGCAAGTGCTCACTGATATGAATCTTGTGATCAAGAAA 300
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 234 CATGGGACTCTATTGGAAGTAGTACAAGTGCTCACTGATATGAATCTTGTGATCAAGAAA 293
Query 301 GCTTACATCTCTTCCGATGGAGGTTGGTTCATGGACGTCTTCAAAGTCATCGACCAAGAT 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 294 GCTTACATCTCTTCCGATGGAGGTTGGTTCATGGACGTTTTCAAAGTCATCGACCAAGAT 353
Query 361 GGCAATAAGATCAGAGACACACAAGTCCTTGACTATATCCAAAGGAGGATAGAGAGCAAC 420
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 354 GGCAATAAGATCAGAGACACTCAAGTCCTTGACTATATCCAAAAGAGGATAGAGAGCAAC 413
Query 421 GCTGGCTGGTTCATTCCACCTTTGAGAAGCTCAGTTGGTGTAATGCCCACTGACGAATAC 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GCTGGGTGGTTCATTCCACCTTTGAGAAGCTCAGTTGGTGTAATGCCCACTGACGAATAC 473
Query 481 ACAGCGATTGAGCTCGCTGGAACTGACAGACCCGGTCTCTTGTCTGAAGTATCTGCTGTT 540
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 ACATCCATTGAGCTCGCTGGAACTGACAGACCCGGTCTCTTGTCTGAAGTATCTGCTGTT 533
Query 541 CTCACAGACCTTCACTGCAACGTTGTGAACGCTGAGATATGGACTCACAACACCAGAGCT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 CTCACAGACCTTCACTGCAACGTTGTGAACGCTGAGATATGGACTCACAACACCAGAGCT 593
Query 601 GCAGCGGTTATTCATGTCACGGACAATTCAACTAATTCAGCCATTACTGACCCGATTCGC 660
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 594 GCAGCGGTTATTCATGTCACGGACAATTCAACTCATTCTGCCATTACTGACCCGATTCGC 653
Query 661 CTTTCCACCATTAAGGAGCTGCTTTGCAATGTAGTTAGGACAAACAGCGGTTCAAGAGCT 720
||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 654 CTTTCCACCATCAAGGAGCTGCTGTGCAATGTAGTGAGGACAAACAGCGGCTCAAGAGCT 713
Query 721 GCGAAAACAGTTTTCTCTTGTTCTGATACACACAGGGAGAGACGGTTGCATCAGATCATG 780
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GCGAAAACAGTCTTCTCTTGTTCTGATACACACAGGGAGAGACGGTTGCATCAGATCATG 773
Query 781 TTTGATGATAGGGACTACGAGGGAGTCAAGAGAGCCAA-GACATCGGCGTCAAGGCCCAG 839
||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||
Sbjct 774 TTTGATGATAGGGACTACGAGGGAGTCAAAAGAG-CAAGGACATCGGCGTCAAGGCCCAG 832
Query 840 TGTCACACTAATGAACATTGAGAAGGATTATACCGTTGTTACCATGAGGTCCAAAGATAG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TGTCACACTAATGAACATTGAGAAGGATTATACCGTTGTTACCATGAGGTCCAAAGATAG 892
Query 900 ACCAAAGCTTGTGTTTGACGTAGTCTGTACTTTGACTGATATGCAGTATGTGGTGTTCCA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 ACCAAAGCTTGTGTTTGACGTAGTCTGTACTTTGACTGATATGCAGTATGTGGTGTTCCA 952
Query 960 TGGCATGGTCAGTACAGAACCAGTAGAGGCTTATCAGGAATTTTACATCCGTCATGTGGA 1019
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 953 TGGCATGGTCAGCACAGAACCAGTGGAGGCTTATCAGGAATTTTACATCCGTCATGTGGA 1012
Query 1020 TGGACTTCCCATAAACTCAGAAGCGGAGCAAGAACGTGTCATACAATGTCTGGAAGCAGC 1079
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1013 TGGACTTCCCATAAACTCAGAAGCAGAGCAAGAACGTGTCATACAATGTCTGGAAGCAGC 1072
Query 1080 CATTGAGAGGAGAGCATCCGAGGGTTTAGAGCTGGAATTATCAGCAGAAGACCGAGTTGG 1139
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 CATTGAGAGGAGAGCATCGGAGGGTTTAGAGCTGGAATTATCAGCAGAAGACCGAGTTGG 1132
Query 1140 TCTCCTCTCAGACATAACCAGAACATTCCGAGAGAACAGCTTAACCATTGTGAGAGCAGA 1199
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 TCTTCTCTCAGACATAACCAGAACATTCCGAGAGAACAGCTTAACCATTGTGAGAGCAGA 1192
Query 1200 GATCTCAACGCGAGAGGGTAAGGCTAAAGACACGTTCTACGTCACAGACGTGACTGGAAA 1259
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1193 GATATCAACGCGAGAGGGTAAGGCTAAAGACACGTTCTACGTTACAGACGTGACTGGAAA 1252
Query 1260 CCCGGTTGAATCAAAAATCGTGGAGGCAATCAGACAACAGATAGGAGTGAGCAAGCTGAA 1319
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1253 CCCGGTTGAATCAAAAATCGTGGAGTCAATCAGACAACAGATAGGAGTAAGCAAGCTGAA 1312
Query 1320 GGTGAAGAAGAAGGAG--G-A---TTGCTCTGTTCTTGGTACAAGCAGGCCTTCGCAAGA 1373
|||||||||||||||| | | ||||||||||||||||||||||||||||||||| ||
Sbjct 1313 GGTGAAGAAGAAGGAGAAGGAGCATTGCTCTGTTCTTGGTACAAGCAGGCCTTCGCACGA 1372
Query 1374 AACAAC-A-A-TGGGGTATTTGCTAAGTAACATCTTCAAACCAAAGTCTCTTCAGAGCTT 1430
|||||| | | ||||||||||||||||||||||||||||||| |||| ||||| |||||
Sbjct 1373 AACAACTACAATGGGGTATTTGCTAAGTAACATCTTCAAACCCAAGTAGCTTCA-AGCTT 1431
Query 1431 CAAGCT-TCACCTATCTCAC--TCATAGAGTATGTG----CTTTGTATAGATTAGACAGA 1483
|| || || | | |||| ||||||||| |||| |||||||||| |||||||||
Sbjct 1432 CAC-CTATCTC--A-CTCATAGTCATAGAGTGTGTGTGTGCTTTGTATAGGTTAGACAGA 1487
Query 1484 GTAGGGCAT-ACTTTAAG 1500
||||||||| | ||||||
Sbjct 1488 GTAGGGCATCA-TTTAAG 1504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77861045295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5