BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg477317

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G01950.1 | Symbols:  | Protein of unknown function (DUF 3339...   468    2e-131


> AT3G01950.1 | Symbols:  | Protein of unknown function (DUF 3339) 
| chr3:323977-324365 FORWARD LENGTH=389
Length=389

 Score =  468 bits (253),  Expect = 2e-131
 Identities = 286/301 (95%), Gaps = 6/301 (2%)
 Strand=Plus/Plus

Query  1    TATAGAGAGACATATA-TAT-G-TAGAGAAGAAACAGAGAAAACAAAGATGGGGTTGGAC  57
            ||||||||||| |||| ||| | ||||||||||||  |||||||||||||||||||||||
Sbjct  4    TATAGAGAGACGTATATTATAGCTAGAGAAGAAAC--AGAAAACAAAGATGGGGTTGGAC  61

Query  58   TGGGGACCGGTGCTAATGTCGGTAATTTTCTTCATCCTGTTGAGCCCTGGAGTTCTGTTT  117
            |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct  62   TGGGGACCGGTGCTAATGTCGGTAATTTTCTTCATCGTGTTGAGCCCTGGAGTTTTGTTT  121

Query  118  CAGCTGCCCGGAAAGAGCAAAGCCGTTGAGTTCGGTGGGTTTCAGACAAGCGGCCCCTCC  177
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  122  CAGCTGCCCGGAAAGAGCAAAGCGGTTGAGTTCGGTGGGTTTCAGACAAGCGGCCCCTCC  181

Query  178  ATTGTCATCCACACTCTCCTCTTCTTCGCCTTCATCACCATCTCCCTCATCGCCCTTCAC  237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  182  ATTGTCATCCACACTCTCCTCTTCTTCGCCTTCATCACCATCTCCCTCATCGCCCTTCAC  241

Query  238  ATCCACATCTACGCCGCCTAGTTTAACCCTACCTTCCCCCACACGTCATGGCCCCTTCTC  297
            |||||||||||||||||||| || |||||||||||||||  ||||||||||| |||| ||
Sbjct  242  ATCCACATCTACGCCGCCTAATT-AACCCTACCTTCCCCTTCACGTCATGGCTCCTTTTC  300

Query  298  T  298
            |
Sbjct  301  T  301



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14627914959


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5