BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477318
Length=213
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01940.1 | Symbols: | Protein of unknown function (DUF 3339... 361 2e-99
> AT3G01940.1 | Symbols: | Protein of unknown function (DUF 3339)
| chr3:322831-323053 REVERSE LENGTH=223
Length=223
Score = 361 bits (195), Expect = 2e-99
Identities = 207/213 (97%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGGAGCGGACTGGGGGCCGGTGGCGGTTGCGGTGGTGCTGTTCGTAGTGTTATCG 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAGGAGCGGACTGGGGGCCGGTGGCGGTTGCGGTGGTGCTGTTCGTAGTGTTATCG 60
Query 61 CCGGGGCTTCTCTTTCAGTTGCCAGCGAGGAGGAGAGTGTTGGAGTGCGGCAACATGACC 120
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 CCGGGGCTTCTGTTTCAGTTGCCGGCGAGGAGGAGAGTGTTGGAGTGCGGCAACATGACC 120
Query 121 ACAAGCGGCATCTCAATATTGGTTCACGCCATTCTCTTCTTTGTTATTATCACGATTTTG 180
|||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 121 ACAAGCGGGATCTCAATATTGGTTCATGCCATTCTCTTCTTTGCTATTATCACGATTTTG 180
Query 181 GTCATCGCCATTCAAATTCACATTCACATCTAA 213
|||||||||||||||||||||||||||||||||
Sbjct 181 GTCATCGCCATTCAAATTCACATTCACATCTAA 213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9500604561
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5