BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477320
Length=1043
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01920.1 | Symbols: | DHBP synthase RibB-like alpha/beta do... 1495 0.0
> AT3G01920.1 | Symbols: | DHBP synthase RibB-like alpha/beta
domain | chr3:317432-319121 FORWARD LENGTH=1061
Length=1061
Score = 1495 bits (809), Expect = 0.0
Identities = 979/1058 (93%), Gaps = 23/1058 (2%)
Strand=Plus/Plus
Query 1 TGAGAGATGGCGGTGGCCAAACTTCACGGCGGCGGTGGTAT-GC--CGATGCCG-ATGCG 56
|||||||||||||||||||||||||| |||||| ||||| || ||||| || | |
Sbjct 12 TGAGAGATGGCGGTGGCCAAACTTCA---CGGCGGAGGTATGGCGGCGATG-CGTCTTCT 67
Query 57 CCTTCTTCCTTCCCCGATGACGCACC-G-G-------ACGCTTCCGAGCATTGCCTCTTT 107
|| |||||||||||||||||||||| | | ||||||||||||| |||||||||
Sbjct 68 TCTACTTCCTTCCCCGATGACGCACCGGCGACCATCAACGCTTCCGAGCACTGCCTCTTT 127
Query 108 CGCTCCACGGAGACACATCGTCGTTGCGTTGGCGGCCAAGAGAAGCCCTAAGCGTCTCAA 167
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 128 ATCTCCACGGAGATACATCGTC---GCGTTGGCGGCCAAGAGAAGCCCTAAGCGTCTCAA 184
Query 168 ATACTCCACTCCTCGTTTCTCCAAGGAGGGGGAATTGGTGTACATAGAGGTCGATCCTTG 227
|||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 185 ATACTCTACTCCTCGTTTCACCAAGGAGGGGGAATTGGTGTACATCGAGGTCGATCCTTG 244
Query 228 TGGTGCTGATTCCTGGAAACTCCAACCTGTCATTGAGCTTCTCAAGCAAGGAGCTGTTGG 287
||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 245 TGGTGTTGATTCCTGGAAACTCCAACCTGTCATTGACCTTCTCAAACAAGGAGCTGTTGG 304
Query 288 TGTTATTCCCACTGATACTGTATATGCCATTGTTTGTGATTGTAAAAACCATTCGGCTGT 347
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||
Sbjct 305 TGTTATTCCCACTGATACCGTATATGCCATTGCTTGTGATTGTAAAAACCATTCCGCTGT 364
Query 348 TGAGCGTCTCCGAAGGATTAAAAAGATTGAATCCTCCAAGCCACTTAGCATCTTATGCCG 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 TGAGCGTCTCCGAAGGATTAAAAAGATTGAATCCTCCAAGCCACTTAGCATCTTATGCCG 424
Query 408 TTCCTTACGAGATATTGACACCTTTACTATGGGCTTTCCTCGTGGTGATGGTCATGGTCA 467
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 425 TTCCTTACGAGATATTGACACTTTTACAATGGGCTTTCCTCGTGGTGATGGTCATGGTCA 484
Query 468 TGCTAACGTTTTTCGAGCTGTCAAGCAATGCTTACCTGGTCCTTACACCTTCATCTTGAC 527
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 485 TGCTAACGTTTTTCGAGCTGTCAAGCAATGCTTACCTGGTCCTTATACCTTCATCTTGAC 544
Query 528 TGCTAGCAAAGAATTACCCAAACAATGTGTAGGCTATGGCACCACAAGTGTCAAATATGC 587
||| ||||| ||| |||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 545 TGCAAGCAAGGAACTACCCAAACAGTGTGTAGGTTATGGCACCACAAGTGTGAAATATGC 604
Query 588 ATCTAGGAAAAATGTGGGTGTCCGCATATCTGATGACCCTCTCTGCCAAGCTATTCTGCA 647
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 605 ATCTAGGAAAAACGTGGGTGTCCGCATATCTGATGATGCTCTCTGCCAAGCTATTCTGCA 664
Query 648 -CGAGATGGATGCCCCACTGATTTCCACAAGTGTGAAAGGGCCAAAAGAAAATGAATGGA 706
| |||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||
Sbjct 665 GC-AGATGGATGCCCCATTGATTTGCACAAGTGTGAAAGGGCCTAAAGAAAATGAATGGA 723
Query 707 TGATTGACCCAACCGCCATCGGTGACATCTATGGACCAGAGGGTCTGGATTTTCTGGTAG 766
|||| ||||||||||| || |||||||| |||||||||||||||||||||||| ||||||
Sbjct 724 TGATCGACCCAACCGCAATAGGTGACATATATGGACCAGAGGGTCTGGATTTTGTGGTAG 783
Query 767 ATGGAGGTGTACGAGTGGCTGAACCATCAACCATCGTGGATATGACAGGACCATATCCCA 826
| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 784 ACGGAGGTATACGAGTGGCTGAACCATCCACCATCGTGGATATGACAGGACCATATCCCA 843
Query 827 AGGTCATACGGCAAGGGAAGGGACCTATATTGCCTTGGATGGTGGTTGATGACGAGGAGT 886
|||||||| || |||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 844 AGGTCATAAGGGAAGGGAAGGGACCTATATTGCCGTGGATGGTGGTTGAGGACGACGAGT 903
Query 887 CTCCCCTGCGCCAAGATCTTATGGCTTCTGGTACTTAAAACAGAGACAGGCACAGATTAG 946
|| |||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 904 CTTCCCTGCGCCAAGATCTTATGGCGTCTGGCACTTAAAACAGAGACAGACACAGATTAG 963
Query 947 GTCTTTGTTTGACATCTACACA-AAAGACACCTTGTAGCTGGAGAATATGAATAATGTGA 1005
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 964 GTCTTTGTTTGACATCTACACACAAAGACACCTTGTAGCTGGAGAATATGAATAATGTGA 1023
Query 1006 ATATTATTATTACAAATGTAAATCCAAAATCCATACAC 1043
||| ||||||||||||| ||| ||||||||||||||
Sbjct 1024 ATACAATTATTACAAATGCGAATTCAAAATCCATACAC 1061
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51138361646
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5