BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477329
Length=908
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01860.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1092 0.0
> AT3G01860.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: response to cadmium ion;
LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G27210.1); Has
66 Blast hits to 66 proteins in 13 species: Archae - 0; Bacteria
- 0; Metazoa - 5; Fungi - 0; Plants - 61; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr3:302645-304562
FORWARD LENGTH=1129
Length=1129
Score = 1092 bits (591), Expect = 0.0
Identities = 822/922 (89%), Gaps = 61/922 (7%)
Strand=Plus/Plus
Query 42 TCTCTCTCTTTCCTGATCCCATCTTTGCTTCTTCGTCTTCCATTTCTCTATGCCTTTTAG 101
||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||
Sbjct 91 TCTCTCTCTTTCC---TCTCATCTTTGCTTCTTCGTCTTCCATCTCTCTATGCCTTTTAG 147
Query 102 ATTCTCTAAACCCATATCTTCCCTCTCTT-T-CT---CC-C---AA------CT-AAAC- 144
||||||||||||||||||||| || |||| | || || | || || |
Sbjct 148 ATTCTCTAAACCCATATCTTCACT-TCTTCTCCTAAACCACAGGAATTCTCTCTCTTTCA 206
Query 145 CA-CA--ATCATCATCATATGGGTTCGTGTGTCTCCTCTTCTCAAAGCAAGCGCTCCTCC 201
|| || |||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 207 CATCATCATCATCATCATATGGGTTCGTGTGTCTCCTCTTCTCAAAGCAAGAGCTCATCC 266
Query 202 GCCTCTGATTCCGTCGTTAAGCTTGCCTCTTTCATCTCTAAACCCGACACCACATCACCT 261
||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| | ||
Sbjct 267 GCCTCTGATTCCGTCGTGAAGCTTGCCTCTTTCATCTCTAAACCAGACTCCACACCGCCC 326
Query 262 CTCAAGACTGACGTCATGATTACTTCCTCCACCATCAACGGGATCCCTCCCA-CAGATTC 320
|||||||||||||||||||| |||||||||||||||||||| | |||||||| | |||||
Sbjct 327 CTCAAGACTGACGTCATGATCACTTCCTCCACCATCAACGGCAACCCTCCCATC-GATTC 385
Query 321 CGGTCGCCGGGATTCAGGTAGA-AAAGAGGAAATGATATTTTTCGATTCACGGGGGTGGC 379
|||||| |||||||||||| | |||||||| ||||||||||||||||||||||||||||
Sbjct 386 CGGTCGTTGGGATTCAGGTA-ACAAAGAGGATATGATATTTTTCGATTCACGGGGGTGGC 444
Query 380 TTGATTCCGACTGTGATGATGATTTCATGAGCGTTGATGGTGAATTTACGCCGTCGCGAG 439
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 445 TTGATTCCGACTGCGATGATGATTTCATGAGCGTTGGTGGTGAATTTACGCCGTCGCGAG 504
Query 440 GAACAACACCGGTGCATCACAAATTCTGTGACCAAACTCCTCA--A-GGAGAGGAGAA-A 495
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 505 GAACAACACCGGTGCATCACAAATTCTGTGACCAAACTCCTCACCAAGGAGAGGAGAACA 564
Query 496 AAC-C--AT--GAAGAAGAAGAACCGTCTCCTACAGATAACAAGAAGAGGCTCCTCGAAC 550
||| | | |||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 565 AACACGGAGAAGAAGAAGAAGAAGCGTCTCCTACCGATAACAAGAAGAGGCTCCTCGAAC 624
Query 551 TCTTTGAAGAGACACAAGACGA-G-G-ATGAAGAGGAAGAAGACTACGTGGCAGAAGGCA 607
||||| |||||||||||||||| | | |||||||||||||||| ||||||||||||||||
Sbjct 625 TCTTTAAAGAGACACAAGACGAAGAGGATGAAGAGGAAGAAGATTACGTGGCAGAAGGCA 684
Query 608 AAGCAAGAACATGTCTCTGGATAAGAACACCTGCTAGATCTTCTGCGCCGGCCACTCCTT 667
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 685 AAGCAAGAGCATGTCTCTGGATAAGAACACCTGTTAGATCTTCTGCGCCGGCCACTCCTT 744
Query 668 ATAATAACAACAAAGAAAGACAGCAAAAATTCAAGAGAGTCAGATCGGCTGCTCACGGTC 727
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||
Sbjct 745 ATAATAACAACAAAGAAAGACAGCAAAAATTCAAGAGAGTGAGATCAGCTGCTCTTGGTC 804
Query 728 GCTGCGTTCCGCGTTTGGTTTCCTGTAGTAGCTTCACTGATCGGCGACGGAATATGATGA 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 GCTGCGTTCCGCGTTTGGTTTCCTGTAGTAGCTTCACTGATCGGCGACGGAATATGATGA 864
Query 788 GTGGTCATGCCCCCATTGACGTCCAACGCTAAAGAAGACaaaaa-aa-gaaaaaaaa--- 842
| |||||||||| |||||||||||||||||||||||||||||| || |||||||||
Sbjct 865 CTAGTCATGCCCCTATTGACGTCCAACGCTAAAGAAGACAAAAAGAAAGAAAAAAAAAAC 924
Query 843 TT-A---------------CTATACATTATGTTTCTTAATTTGTCCTTTACTGTTGTTTT 886
|| | ||||||||||||||||||||||||||||| | |||||||||
Sbjct 925 TTTAAATAATATTAAATTACTATACATTATGTTTCTTAATTTGTCCTTGATTGTTGTTTT 984
Query 887 CCTAAGGATCGAACAATGTTGT 908
|| |||||||||||||||||||
Sbjct 985 CCAAAGGATCGAACAATGTTGT 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44356751801
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5