BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477331
Length=1926
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01840.1 | Symbols: | Protein kinase superfamily protein | ... 2833 0.0
AT3G01830.1 | Symbols: | Calcium-binding EF-hand family protei... 654 0.0
> AT3G01840.1 | Symbols: | Protein kinase superfamily protein
| chr3:296582-298648 REVERSE LENGTH=1979
Length=1979
Score = 2833 bits (1534), Expect = 0.0
Identities = 1758/1867 (94%), Gaps = 11/1867 (1%)
Strand=Plus/Plus
Query 1 GACATGGCTATTTCAGTTAGTAAGCAGTTCaaaaaaaGTCTTGTAGTGATCTTGCTCTTC 60
||||||||| |||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct 12 GACATGGCTGTTTCAGTTAGTAAGCAGTACATGACAAGTCTTGTAGTGATCTTGCTCTTC 71
Query 61 ATCTCCTTATCATCGCTCTCTCCAACTTCAACTTCACACAGCTGTGACCCTGTACaagaa 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||
Sbjct 72 ATCTCCTTATCATCTCTCTCTCCAACTTCAACTTCACACAGCTGTGACCCTGT-C--GAA 128
Query 121 gaagaagaagaagCCTCCTCCTTCGGTTACGTTTGCCACTCAAACCTTCAAAAGTGCCAC 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 129 GAAGAAGAAGAAGCCTCCTCCTTCGGTTACGTTTGCCACTCAAACCTCCAAAAGTGCCAC 188
Query 181 ACTTTCGCCATTCTCAGAGCCAAATCTCCTTTCAACTCCATCTCCAACCTGAGTTACCAT 240
|||||||||||||||||||||||| |||| ||| | ||| |||| |||||||| ||||
Sbjct 189 ACTTTCGCCATTCTCAGAGCCAAACCTCCCTTCTATTCCCTCTCGGACCTGAGTCGCCAT 248
Query 241 CTAGGTCTAGACACAGAGGCAGACGAGTTTGTTCTGCAAGGTCAGTTACTGTTGATCCCA 300
|| ||||| ||| |||| | ||||||| ||||| | ||||||||||||| |||||||||
Sbjct 249 CTTGGTCTCGACGCAGA--C-GACGAGTATGTTCCGAAAGGTCAGTTACTCTTGATCCCA 305
Query 301 GTTGAGTGCAGGTGTAATGGAAGCATCTACGAGGCCAATCTCATTAAAACTTGCGTTAAA 360
| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 306 ATAGAGTGCAGGTGTAATGGAAGCATCTACGAGGCCAGTCTCATTAAAAATTGCGTTAAA 365
Query 361 GGAGACACCTTTCGCTCTGTCTCTCAGTCTCTGCAAGGCTTGACCTCGTGCCTATCTATC 420
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 366 GGAGACACCTTTCGCTCTGTCTCTCAGTCTCTGCAAGGCTTGACCACCTGCCTATCTATC 425
Query 421 AGAGAGAAAAACCCAGATATTTCCGAGGACAAGATTGGCGACAACGTTAAGCTGCGTTTG 480
|||||||| || ||| |||||||||| |||||| ||||||||||| |||| |||||||||
Sbjct 426 AGAGAGAAGAATCCACATATTTCCGAAGACAAGCTTGGCGACAACATTAAACTGCGTTTG 485
Query 481 GCGATCAGGTGCTCCTGTCCACAAGAAGGCGTTTCAAACACTAGTTTTCTTGTGACGTAT 540
|||||||||||||| |||||||||||||||||||||||| |||||||||| || ||||||
Sbjct 486 GCGATCAGGTGCTCTTGTCCACAAGAAGGCGTTTCAAACGCTAGTTTTCTCGTTACGTAT 545
Query 541 CCGGTGGGAGTCCGCGACAGCGTTACAAGCCTGGCGGTTAGGTTCAACACAACAGAGGAT 600
|||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 546 CCGGTGGGCGTCCGCGACAGCGTTTCAAGCCTGGCGGTTAGGTTTAACACAACAGAGGAT 605
Query 601 GCCATTGTCTCTGCAAACAACAAATCTGGTGTCGTTCCACTCAAGCCTGCTCTCATCCCT 660
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 606 GCCATTGTCTCTGCAAACAACAAATCTGGTGTGGTTCCACTCAAGCCTGCTCTCATCCCT 665
Query 661 CTTGATCACAAACCAGAGAAACCCGAGAATCGCCAGAAAAGAAAACCATCCAAGAAGAAA 720
||||||||||||||||||||| | || ||| || ||||||||| |||||||||||||||
Sbjct 666 CTTGATCACAAACCAGAGAAA--CAAGGATC-CCGGAAAAGAAATCCATCCAAGAAGAAA 722
Query 721 CGGTCAAAGATGAAGCTCATGATCGCTGTGAGCAGCGCCATTGCTGGAGTTTTCGGTCTT 780
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 723 CGGTCAAAGATGAAGCTCATGATCGCTGTGAGCAGCGCGATTGCTGGAGTTTGCGGTCTT 782
Query 781 GTCACTCTCATGGTGTTTGGTTACTTACACTGGAAGAAAGAGACGCAGATGCAAACGCAA 840
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 783 GTCACTCTCATGGTGTTTGGTTACTTACACTGGAAGAAAGAGACGCAGATTCAAACGCAA 842
Query 841 ACGCAAAAGTGGATTAGCAACAAAGACCCCGAGACGCGGCAGCTGAGTCTAAGCATCCGA 900
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 843 ACGCAAAAGTGGATTAGCAACAAAGACCCCGAGACGCGGCAGCTGAGTCTGAGCATCCGA 902
Query 901 ACCACGAGTGACAAGAAAATCTCGTTTGAAGGGTCACAGGACGGTTCCATCTTGGATTCT 960
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 903 ACCACGAGTGACAAGAAAATCTCGTTTGAAGGGTCGCAGGACGGTTCCATCTTGGATTCT 962
Query 961 CACAACACTGTCGGCACCACAACGCCGCGAAAACCTGTTCTGGAGATGTACGCGTTTGAA 1020
|||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 963 CACAACACCGTCGGCACCACAACGCCCCGAAAACCCGTTCTGGAGATTTACGCGTTTGAA 1022
Query 1021 GAGTTAGAGAAGGCCACTGAGAATTTCAGTTCAAGCAATCACATCAAAGGTTCGGTTTAT 1080
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 GAGTTAGAGAAGGCCACGGAGAATTTCAGTTCAAGCAATCACATCAAAGGTTCGGTTTAT 1082
Query 1081 TTCGGTTCGCTCAAAGGCAAAGACTTGGCTATAAAGCAAGTCAGTGCAGATGCAGTGAAA 1140
||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 1083 TTCGGTTCGCTCAAAGGCAAAGACTTGGCTATAAAGCAAGTCAATGCAGATGAAATGAAA 1142
Query 1141 AGGTTCGATTTCGGGCTTCTGAACGATCAGTCACACTACTATAACCACAATCTGATTAGG 1200
|| ||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||
Sbjct 1143 AGATTCGATTTCGGGCTTCTCAATGATCAGTCACACTACTATAACCACAATGTGATTAGG 1202
Query 1201 GTTCTTGGGACATGTTTTCCAGAAATCGATCAGGATTCTTATCTGGTTTTCGAGTATGCA 1260
|||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1203 GTTCTTGGAACATGTTTTAGAGAAATCGATCAAGATTCTTATCTGGTTTTCGAGTATGCA 1262
Query 1261 AGGAATGGGTCCCTGTGGGATTGGATTCAGAACAAATTGGCCATCAAGAATCAATTCATC 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 AGGAATGGGTCCCTGTGGGATTGGATTCAGAACAAATTGGCCATCAAGAATCAATTCATC 1322
Query 1321 GAGTCTTGTTACTGTTTCTTGGCATGGAAACAGAGGATCAAGATATGTCACGACGTCGCC 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1323 GAGTCTTGTTACTGTTTCTTGGCATGGAAACAGAGGATCAAGATATGTCACGATGTCGCC 1382
Query 1381 ATCGCGTTAAAGTATATGCATCGGATCAACTATGTCCACGGCAACATCAAGAGCAGGAAC 1440
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1383 ATCGCGTTAAAGTATATGCATCGGATCAACTACGTCCACGGCAACATCAAGAGCAGAAAC 1442
Query 1441 ATCTTCTTGAACGAAGATCTCAGAGGTAAAGTCGGAAACTTTGGGATGTCAAAGTGCTTA 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1443 ATCTTCTTGAACGAAGATCTCAGAGGTAAAGTCGGAAACTTTGGGATGTCAAAGTGCGTA 1502
Query 1501 ACCAACGAATTAGCGACGGAAGAGAACCTTATAGA-AGGTTCCCTGTCTCCAGCTTCTGA 1559
||||| |||||||| || ||||||||||||||||| || ||| |||||||||||||||||
Sbjct 1503 ACCAATGAATTAGCCACAGAAGAGAACCTTATAGAGAG-TTCACTGTCTCCAGCTTCTGA 1561
Query 1560 CGTATTCGCTTATGGGATTATCGTAATGGAGGTTTTGTCTGGACAAACCCCAGAGATGTT 1619
| |||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1562 CATATTTGCTTACGGGATAATCGTAATGGAGGTTTTGTCTGGACAAACCCCAGATATGTT 1621
Query 1620 GCTTGGATTGCAAGAACAAGAGACAACATCCCTTGGGATAGAAGAAACTTGTGTTTCCGA 1679
|||||||||||||||| |||||||||||||||||||| | ||||||||| |||||||||
Sbjct 1622 GCTTGGATTGCAAGAAGTAGAGACAACATCCCTTGGGACACAAGAAACTTTTGTTTCCGA 1681
Query 1680 ATGGAGCAGATTGAGAAGGGTTCTCGGGGACAAGGAAAAGCTGAGGGAAGTGATGGACAG 1739
|||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1682 ATGGAGTAGATTAAGAAGGCTTCTCGGGGACAAGGAAAAGCTGAGGGAAGTGATGGACAG 1741
Query 1740 CACATTGGGGGAGAGCTATTCGCTTGATTCCGCATTTGAGCTCGCAAGTATTGCAAGAGA 1799
||||||||| |||||||||||| ||||||| || ||||| |||||||||||||||||||
Sbjct 1742 CACATTGGGAGAGAGCTATTCGGTTGATTCTGCGTTTGAAATCGCAAGTATTGCAAGAGA 1801
Query 1800 TTGTACTGCAGAAGAAGCCGAGTCAAGGCCGAGCGCGGCTGAGATAGCAGAGAGGGTTTC 1859
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1802 TTGTACTGCAGAAGAAGCCGAGTCAAGGCCGAGCGCGGTTGAGATTGCAGAGAGGGTTTC 1861
Query 1860 AAGATTg 1866
|||||||
Sbjct 1862 AAGATTG 1868
Score = 106 bits (57), Expect = 9e-22
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1867 agagagagagagTACCTTAATTTCAGAGAGTTCATACAAGCCTTTGGTAAAGAAGAGTAG 1926
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 AGATAGAGAGAGTACCTTAATTTCAGAGAGTTCATACAAGCCTTTGGTAAAGAAGAGTAG 1966
> AT3G01830.1 | Symbols: | Calcium-binding EF-hand family protein
| chr3:296054-297133 FORWARD LENGTH=1080
Length=1080
Score = 654 bits (354), Expect = 0.0
Identities = 413/442 (93%), Gaps = 2/442 (0%)
Strand=Plus/Minus
Query 1426 ATCAAGAGCAGGAACATCTTCTTGAACGAAGATCTCAGAGGTAAAGTCGGAAACTTTGGG 1485
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ATCAAGAGCAGAAACATCTTCTTGAACGAAGATCTCAGAGGTAAAGTCGGAAACTTTGGG 1021
Query 1486 ATGTCAAAGTGCTTAACCAACGAATTAGCGACGGAAGAGAACCTTATAGA-AGGTTCCCT 1544
|||||||||||| ||||||| |||||||| || ||||||||||||||||| || ||| ||
Sbjct 1020 ATGTCAAAGTGCGTAACCAATGAATTAGCCACAGAAGAGAACCTTATAGAGAG-TTCACT 962
Query 1545 GTCTCCAGCTTCTGACGTATTCGCTTATGGGATTATCGTAATGGAGGTTTTGTCTGGACA 1604
|||||||||||||||| |||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 961 GTCTCCAGCTTCTGACATATTTGCTTACGGGATAATCGTAATGGAGGTTTTGTCTGGACA 902
Query 1605 AACCCCAGAGATGTTGCTTGGATTGCAAGAACAAGAGACAACATCCCTTGGGATAGAAGA 1664
||||||||| ||||||||||||||||||||| |||||||||||||||||||| | ||||
Sbjct 901 AACCCCAGATATGTTGCTTGGATTGCAAGAAGTAGAGACAACATCCCTTGGGACACAAGA 842
Query 1665 AACTTGTGTTTCCGAATGGAGCAGATTGAGAAGGGTTCTCGGGGACAAGGAAAAGCTGAG 1724
||||| ||||||||||||||| ||||| |||||| |||||||||||||||||||||||||
Sbjct 841 AACTTTTGTTTCCGAATGGAGTAGATTAAGAAGGCTTCTCGGGGACAAGGAAAAGCTGAG 782
Query 1725 GGAAGTGATGGACAGCACATTGGGGGAGAGCTATTCGCTTGATTCCGCATTTGAGCTCGC 1784
|||||||||||||||||||||||| |||||||||||| ||||||| || ||||| ||||
Sbjct 781 GGAAGTGATGGACAGCACATTGGGAGAGAGCTATTCGGTTGATTCTGCGTTTGAAATCGC 722
Query 1785 AAGTATTGCAAGAGATTGTACTGCAGAAGAAGCCGAGTCAAGGCCGAGCGCGGCTGAGAT 1844
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 721 AAGTATTGCAAGAGATTGTACTGCAGAAGAAGCCGAGTCAAGGCCGAGCGCGGTTGAGAT 662
Query 1845 AGCAGAGAGGGTTTCAAGATTg 1866
|||||||||||||||||||||
Sbjct 661 TGCAGAGAGGGTTTCAAGATTG 640
Score = 106 bits (57), Expect = 9e-22
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 1867 agagagagagagTACCTTAATTTCAGAGAGTTCATACAAGCCTTTGGTAAAGAAGAGTAG 1926
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGATAGAGAGAGTACCTTAATTTCAGAGAGTTCATACAAGCCTTTGGTAAAGAAGAGTAG 542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95381035500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5