BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477332
Length=1094
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01820.1 | Symbols: | P-loop containing nucleoside triphosp... 1454 0.0
> AT3G01820.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:293754-295458 REVERSE
LENGTH=1120
Length=1120
Score = 1454 bits (787), Expect = 0.0
Identities = 989/1081 (91%), Gaps = 36/1081 (3%)
Strand=Plus/Plus
Query 32 tctctctcttctctttctctctGAATCCGCCGCCACGCCTTCACCATGGCTTGGCTAAGC 91
||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 58 TCTCTTTC-TCTCTTTCTCTCTGAATCCGCCGCCACGCCTTCACCATGGCCTGGCTTAGC 116
Query 92 CGCGTCAGAGGAGTTGT-GCCGGTAACAAGGCTCGCAGCGACGCGTCGATCGTTTGGATC 150
||||| ||||||||| | |||||| |||||||||||||||| |||||||| ||||||||
Sbjct 117 CGCGTGAGAGGAGTT-TCGCCGGTGACAAGGCTCGCAGCGATTCGTCGATCTTTTGGATC 175
Query 151 AGCGGCCGCCTTGGAGTTTGACTACGACTCCGACGACGAGTACTTGTACGGAGATGATGG 210
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 176 AGCGGCCGCGTTGGAGTTTGACTACGACTCCGATGACGAGTACTTGTACGGAGATGATCG 235
Query 211 CCG-TTGCGCGGAGCCGAGGCTTGGGTTGGATGGATCGGGGCCGGATAGAGGAGTGCAGT 269
||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CCGCCT-CGCGGAACCGAGGCTTGGGTTGGATGGATCGGGGCCGGATAGAGGAGTGCAGT 294
Query 270 GGGTGCTCATGGGAGCCCCTGGAGCTTGGAGGCACGTCTTCGCCGAGAGGCTCTCCAAGC 329
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 295 GGGTGCTTATGGGAGCCCCTGGAGCATGGAGGCACGTCTTCGCCGAGAGGCTCTCCAAAC 354
Query 330 TTCTTGAAGTTCCTCACATTTCCATGGGATCGCTTGTCCGTCAAGAACTCAACCCTAGAT 389
| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 355 TGCTTGAAGTTCCTCACATTTCCATGGGGTCCCTTGTCCGTCAAGAACTCAACCCTAGAT 414
Query 390 CTTCTCTCTACAAGGAGATTGCAAGTGCTGTAAATGAACGAAAGCTTGTTCCAAAGAGTG 449
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 415 CTTCTCTCTACAAGGAGATTGCAAGTGCTGTAAATGAACGAAAGCTGGTTCCAAAGAGTG 474
Query 450 TTGTGTTTGCGTTGCTATCAAAGAGGCTCGAAGAAGGCTAT-CTTAGGGGGGAAACTGGT 508
||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct 475 TTGTGTTTGCGTTGCTATCAAAGAGGCTCGAAGAAGGCTATGCA-AGAGGGGAAACTGGT 533
Query 509 TTCATCCTTCATGGCATTCCCCGCACTCGTTTTCAAGCCGAAACTCTTGATCAAATCGCT 568
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 534 TTCATTCTTCATGGCATTCCTCGCACTCGTTTTCAAGCCGAAACTCTTGATCAAATCGCT 593
Query 569 CAGATTGACCTTGTTGTCAATCTCAAATGCTCTGAAGAGCATCTGGTAAACCGAAATGCT 628
||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 594 CAGATTGACCTCGTTGTCAATCTCAAATGCTCTGAAGACCATCTGGTAAACCGGAATG-- 651
Query 629 CTAAATGATACATCTCTGCCG-AGGCAAGAGTTCCTCGGCTCTATGTTACACTCACCTGT 687
||| || ||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 652 --AAA-----CAGCTCTGCCTCAG-CAGGAGTTCCTCGGCTCTATGTTACACTCACCTGT 703
Query 688 TGCAATCAATGCTGGGAGGGAGACTCTCGGTGTCTACTCACAGGAGCTGGAAGAATACTA 747
||||||||||||| ||||||||| | ||||||||||| |||||||| |||||||||||||
Sbjct 704 TGCAATCAATGCTCGGAGGGAGAGTGTCGGTGTCTACGCACAGGAGGTGGAAGAATACTA 763
Query 748 CAGGAAGCAGAGGAAACTTCTAGACTTTCATGTTGGCGGTGCCACATCAGCAGAAACATG 807
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 764 TAGGAAGCAGAGGAAACTGCTAGACTTTCATGTTGGCGGTGCCACATCAGCAGACACATG 823
Query 808 GCAGGGCTTGTTGGCAGCTTTGCATCTGAAGCAGGTGAATTTGGCGACTTCACAGAAGCT 867
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 824 GCAGGGCTTGTTGGCAGCTTTACATCTGAAGCAGGTGAATTTGACGACTTCACAGAAGCT 883
Query 868 GACTTTGTGATGATGAACTACAAAAGGCTGAGCTTTGCTTTATAAAATTTTGATCTTTCT 927
||| |||||||||||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct 884 AACTCTGTGATGATGAACTACAAAA--CAGAGCTTTGCTTTATAAA-TTTTGATCTTTCT 940
Query 928 CTTTCATTTTATGGGTCtttttttt---t--t-t-----tttttttttGTTTTCAAAATC 976
|| |||||||||||||||| || | | | ||||||||||||||| ||
Sbjct 941 CTCTCATTTTATGGGTCTTCTTAACCCCTAATATGCAACTTTTTTTTTGTTTTCTTTTTC 1000
Query 977 TGTAATTCAA-GTTTTGCGAGAGATCCAAA-GTGATGAGGATGATAC-ACTAAAGCTTGT 1033
|||||||||| ||||||||||||||| ||| |||||||||||||||| ||||||||||||
Sbjct 1001 TGTAATTCAAAGTTTTGCGAGAGATC-AAACGTGATGAGGATGATACCACTAAAGCTTGT 1059
Query 1034 AATGAGTCTATTATATATACAACAAATATTTTCCATCTATGAAAAGTCGTTCCTATTTCA 1093
|||||||||||||||||||||||||| |||||||||||||||||| | |||||||| |||
Sbjct 1060 AATGAGTCTATTATATATACAACAAAGATTTTCCATCTATGAAAAATAGTTCCTATATCA 1119
Query 1094 C 1094
|
Sbjct 1120 C 1120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53614182060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5