BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477332 Length=1094 Score E Sequences producing significant alignments: (Bits) Value AT3G01820.1 | Symbols: | P-loop containing nucleoside triphosp... 1454 0.0 > AT3G01820.1 | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:293754-295458 REVERSE LENGTH=1120 Length=1120 Score = 1454 bits (787), Expect = 0.0 Identities = 989/1081 (91%), Gaps = 36/1081 (3%) Strand=Plus/Plus Query 32 tctctctcttctctttctctctGAATCCGCCGCCACGCCTTCACCATGGCTTGGCTAAGC 91 ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 58 TCTCTTTC-TCTCTTTCTCTCTGAATCCGCCGCCACGCCTTCACCATGGCCTGGCTTAGC 116 Query 92 CGCGTCAGAGGAGTTGT-GCCGGTAACAAGGCTCGCAGCGACGCGTCGATCGTTTGGATC 150 ||||| ||||||||| | |||||| |||||||||||||||| |||||||| |||||||| Sbjct 117 CGCGTGAGAGGAGTT-TCGCCGGTGACAAGGCTCGCAGCGATTCGTCGATCTTTTGGATC 175 Query 151 AGCGGCCGCCTTGGAGTTTGACTACGACTCCGACGACGAGTACTTGTACGGAGATGATGG 210 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 176 AGCGGCCGCGTTGGAGTTTGACTACGACTCCGATGACGAGTACTTGTACGGAGATGATCG 235 Query 211 CCG-TTGCGCGGAGCCGAGGCTTGGGTTGGATGGATCGGGGCCGGATAGAGGAGTGCAGT 269 ||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 236 CCGCCT-CGCGGAACCGAGGCTTGGGTTGGATGGATCGGGGCCGGATAGAGGAGTGCAGT 294 Query 270 GGGTGCTCATGGGAGCCCCTGGAGCTTGGAGGCACGTCTTCGCCGAGAGGCTCTCCAAGC 329 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 295 GGGTGCTTATGGGAGCCCCTGGAGCATGGAGGCACGTCTTCGCCGAGAGGCTCTCCAAAC 354 Query 330 TTCTTGAAGTTCCTCACATTTCCATGGGATCGCTTGTCCGTCAAGAACTCAACCCTAGAT 389 | |||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 355 TGCTTGAAGTTCCTCACATTTCCATGGGGTCCCTTGTCCGTCAAGAACTCAACCCTAGAT 414 Query 390 CTTCTCTCTACAAGGAGATTGCAAGTGCTGTAAATGAACGAAAGCTTGTTCCAAAGAGTG 449 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 415 CTTCTCTCTACAAGGAGATTGCAAGTGCTGTAAATGAACGAAAGCTGGTTCCAAAGAGTG 474 Query 450 TTGTGTTTGCGTTGCTATCAAAGAGGCTCGAAGAAGGCTAT-CTTAGGGGGGAAACTGGT 508 ||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| Sbjct 475 TTGTGTTTGCGTTGCTATCAAAGAGGCTCGAAGAAGGCTATGCA-AGAGGGGAAACTGGT 533 Query 509 TTCATCCTTCATGGCATTCCCCGCACTCGTTTTCAAGCCGAAACTCTTGATCAAATCGCT 568 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 534 TTCATTCTTCATGGCATTCCTCGCACTCGTTTTCAAGCCGAAACTCTTGATCAAATCGCT 593 Query 569 CAGATTGACCTTGTTGTCAATCTCAAATGCTCTGAAGAGCATCTGGTAAACCGAAATGCT 628 ||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 594 CAGATTGACCTCGTTGTCAATCTCAAATGCTCTGAAGACCATCTGGTAAACCGGAATG-- 651 Query 629 CTAAATGATACATCTCTGCCG-AGGCAAGAGTTCCTCGGCTCTATGTTACACTCACCTGT 687 ||| || ||||||| || || |||||||||||||||||||||||||||||||| Sbjct 652 --AAA-----CAGCTCTGCCTCAG-CAGGAGTTCCTCGGCTCTATGTTACACTCACCTGT 703 Query 688 TGCAATCAATGCTGGGAGGGAGACTCTCGGTGTCTACTCACAGGAGCTGGAAGAATACTA 747 ||||||||||||| ||||||||| | ||||||||||| |||||||| ||||||||||||| Sbjct 704 TGCAATCAATGCTCGGAGGGAGAGTGTCGGTGTCTACGCACAGGAGGTGGAAGAATACTA 763 Query 748 CAGGAAGCAGAGGAAACTTCTAGACTTTCATGTTGGCGGTGCCACATCAGCAGAAACATG 807 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 764 TAGGAAGCAGAGGAAACTGCTAGACTTTCATGTTGGCGGTGCCACATCAGCAGACACATG 823 Query 808 GCAGGGCTTGTTGGCAGCTTTGCATCTGAAGCAGGTGAATTTGGCGACTTCACAGAAGCT 867 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 824 GCAGGGCTTGTTGGCAGCTTTACATCTGAAGCAGGTGAATTTGACGACTTCACAGAAGCT 883 Query 868 GACTTTGTGATGATGAACTACAAAAGGCTGAGCTTTGCTTTATAAAATTTTGATCTTTCT 927 ||| |||||||||||||||||||| | ||||||||||||||||| ||||||||||||| Sbjct 884 AACTCTGTGATGATGAACTACAAAA--CAGAGCTTTGCTTTATAAA-TTTTGATCTTTCT 940 Query 928 CTTTCATTTTATGGGTCtttttttt---t--t-t-----tttttttttGTTTTCAAAATC 976 || |||||||||||||||| || | | | ||||||||||||||| || Sbjct 941 CTCTCATTTTATGGGTCTTCTTAACCCCTAATATGCAACTTTTTTTTTGTTTTCTTTTTC 1000 Query 977 TGTAATTCAA-GTTTTGCGAGAGATCCAAA-GTGATGAGGATGATAC-ACTAAAGCTTGT 1033 |||||||||| ||||||||||||||| ||| |||||||||||||||| |||||||||||| Sbjct 1001 TGTAATTCAAAGTTTTGCGAGAGATC-AAACGTGATGAGGATGATACCACTAAAGCTTGT 1059 Query 1034 AATGAGTCTATTATATATACAACAAATATTTTCCATCTATGAAAAGTCGTTCCTATTTCA 1093 |||||||||||||||||||||||||| |||||||||||||||||| | |||||||| ||| Sbjct 1060 AATGAGTCTATTATATATACAACAAAGATTTTCCATCTATGAAAAATAGTTCCTATATCA 1119 Query 1094 C 1094 | Sbjct 1120 C 1120 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53614182060 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5