BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477335
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01790.1 | Symbols: | Ribosomal protein L13 family protein ... 1282 0.0
> AT3G01790.1 | Symbols: | Ribosomal protein L13 family protein
| chr3:283709-285760 REVERSE LENGTH=884
Length=884
Score = 1282 bits (694), Expect = 0.0
Identities = 771/807 (96%), Gaps = 9/807 (1%)
Strand=Plus/Plus
Query 61 CTGAAGAACGATGGCGACTCAGGCTGCTGCCGCTGCCTCATTCAAGGGCAACTTGAAGAA 120
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 86 CTGAAGAACGATGGCGACTCAGGCTGCTGCTGCTGCCTCATTCAAGGGCAACTTAAAGAA 145
Query 121 AGCTGTGGCAGGTATAAAGCGTATCAATCTCGACGGTCTTCGTTGGCGTGTTTTTGATGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 146 AGCTGTGGCAGGTATAAAGCGTATCAATCTCGACGGTCTTCGTTGGCGTGTTTTTGATGC 205
Query 181 CAGAGGCCAGGTTCTTGGTAGACTAGCATCCCAGATATCAACCGTGCTTCAAGCCAAAGA 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 206 CAGAGGCCAGGTTCTTGGTAGACTAGCTTCCCAGATATCAACCGTGCTTCAAGCCAAAGA 265
Query 241 TAAGCCTACTTATTGTCCAAACCGCGACGATGGCGATATTTGTATTGTTCTCAATGCTAA 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 266 TAAGCCTACTTATTGTCCTAACCGCGACGATGGCGATATTTGTATTGTTCTCAATGCTAA 325
Query 301 GGAAATTGGCTTCACTGGAAGAAAGCTCACTGACAAATTCTACCGTTGGCATACTGGGTA 360
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 GGAAATCGGCTTCACAGGAAGAAAGCTCACTGACAAATTCTACCGTTGGCATACTGGGTA 385
Query 361 CATTGGACACCTCAAGGAACGGAGTCTCAAAGATCAGATGGCCAAAGATCCCACAGAGGT 420
||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 386 CATCGGACACCTGAAGGAACGGAGTCTGAAAGATCAGATGGCCAAAGATCCCACAGAGGT 445
Query 421 CATACGTAAGGCTGTCTGGCGCATGCTTCCAAGTAACAATTTGCGTGATGACAGGGATCG 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 CATTCGTAAGGCTGTCTGGCGCATGCTTCCAAGTAACAATTTGCGTGATGACAGGGATCG 505
Query 481 GAAGCTGAGGATATTTGAAGGCGGTGAGCATCCTTTTGGGGACAAGCCACTTGAGCCATT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 GAAGCTGAGGATATTTGAAGGCGGTGAGCATCCTTTTGGGGACAAGCCACTTGAGCCATT 565
Query 541 TGTGATGCCGCCTCGTAGAGTGAGAGAGATGCGACCGCGCGCAAGGCGAGCAATGATCCG 600
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 566 TGTGATGCCGCCTCGTAGAGTTAGAGAGATGCGACCGCGCGCAAGGCGAGCAATGATCCG 625
Query 601 TGCGCAGAAGAAGGCAGAGCAGGCAGAAAATGAGGGAACAGAGGTAAAGAAAGGAAAGAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 TGCGCAGAAGAAGGCAGAGCAGGCAGAAAATGAGGGAACAGAGGTAAAGAAAGGAAAGAA 685
Query 661 GAGGACCCCCTCTCAAGTAACTGCGTAGAGGAATTACTTCAGAGGAA-GCTAGTGATGTG 719
|||||||| |||| ||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 686 GAGGACCCTCTCTGAAGTACCTGCGTAGAGGAATTACTTCAGAGGAAAGCTAGTGATGTG 745
Query 720 ACTCGTCTTATCATCTGTAAGCAACGTTCATAATGCAGGCGTAGATAAGCTTGTAAGGCT 779
||| ||||| | || ||||||||| ||||||||||||| ||| ||||||||| |||||||
Sbjct 746 ACT-GTCTTTTTATTTGTAAGCAAAGTTCATAATGCAGACGTGGATAAGCTTTTAAGGCT 804
Query 780 TTCTTGTTTATTGAATATCAGACAATAAACCTGTTTATGGATCTCAGACAATGTATCACA 839
||||||||| | |||||||||||||||||| ||||||||| ||| |||||||||
Sbjct 805 TTCTTGTTTCT-------CAGACAATAAACCTGTTTCTGGATCTCAAACACTGTATCACA 857
Query 840 AATGAAGCCAAAACTGTCTTCCTTAAA 866
|||||||||||||| |||||||||||
Sbjct 858 AATGAAGCCAAAACCATCTTCCTTAAA 884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43201366420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5