BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477338
Length=2228
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01770.1 | Symbols: ATBET10, BET10 | bromodomain and extrate... 2828 0.0
> AT3G01770.1 | Symbols: ATBET10, BET10 | bromodomain and extraterminal
domain protein 10 | chr3:275411-278785 REVERSE LENGTH=2288
Length=2288
Score = 2828 bits (1531), Expect = 0.0
Identities = 1980/2187 (91%), Gaps = 69/2187 (3%)
Strand=Plus/Plus
Query 68 tctgtctctGCTCCAGAAGATTTACGCTTCTGCCTCGGTTCTCTTGCTTCCGCTTCGGTT 127
||||| |||||| ||||||||||||||| | ||||||||||||| |||| ||| |||||
Sbjct 144 TCTGTTTCTGCTGGAGAAGATTTACGCTTGTTCCTCGGTTCTCTTACTTCTGCTCCGGTT 203
Query 128 CGATCGCTTGCTCAGTATTTCGAGTCGGTTAGTTCCGAATT-GGTGGGCG--AT-ATGAC 183
|||||||||||| ||| |||||||| |||| | | | || |||||||| || |||||
Sbjct 204 CGATCGCTTGCTAAGTGTTTCGAGTTGGTTCG---C-ACTTCGGTGGGCGATATCATGAC 259
Query 184 TGTGAGGAACGGTGGTTTCCCAGGAGATTACT-ATCGTACCAGCTTTGACACTCCTGGCG 242
|||||||||||||||||||||||||||||| | |||||| ||| |||||| |||| ||||
Sbjct 260 TGTGAGGAACGGTGGTTTCCCAGGAGATTA-TAATCGTAACAGTTTTGACTCTCCCGGCG 318
Query 243 GCTGTGATGATAGCCCTAATGCTTCC---GAGGATGAAACTTTTGGTGTCCCGAGAATGG 299
|||||||||||||||| ||||||||| || |||||||||||||||||||||||||| |
Sbjct 319 GCTGTGATGATAGCCCCAATGCTTCCAAGGATGATGAAACTTTTGGTGTCCCGAGAATAG 378
Query 300 TTTTACCCTTGTCTGACTTGTCATCATCGGAAAGGAAAAAGCT-GATTCATACGCTTCGT 358
|||||||||||||||||||||||||||| ||||||| |||| | ||||||||||||||||
Sbjct 379 TTTTACCCTTGTCTGACTTGTCATCATCAGAAAGGAGAAAG-TGGATTCATACGCTTCGT 437
Query 359 CAGGAGCTGGAACAAATACGCTCCTTTCAGAAGAGTCTTGTGGA-C--CTTCCTATGTCT 415
||||||||||||||| |||| ||||||||||||||| ||| ||| | |||||||| |||
Sbjct 438 CAGGAGCTGGAACAACTACGGTCCTTTCAGAAGAGTGTTGGGGACCTTCTTCCTATATCT 497
Query 416 AACATTG----T--TACACCTGTGAGTAATAATGTGTCTCGACCCAAGAGTTTTAGAATG 469
|| |||| | |||||||| | | |||||||||||| |||||||||||| |||||
Sbjct 498 AAGATTGTTACTAGTACACCTG-CA--AGTAATGTGTCTCGCCCCAAGAGTTTTGGAATG 554
Query 470 GCACGATGCTCTACTGGCCCTGGAAAAAGGGTGCTCCCCTTTTCAGCAACCAAACCTGAG 529
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 555 TCACGATGCTCTACTGGCCCTGGAAAAAGGGTGCTCCCCTTCACAGCAACCAAACCAGAG 614
Query 530 CCAGTCACCACTTCTACAATGCTTCGGATGAAGCAATGTGAGACCCTCCTCAAACGATTG 589
|||||||||||||| || ||||||||||||||||||||||||| |||||| |||||||||
Sbjct 615 CCAGTCACCACTTCCACTATGCTTCGGATGAAGCAATGTGAGAGCCTCCTTAAACGATTG 674
Query 590 ATGTCCCAACAGCACTGCTGGCTCTTTAATACCCCTGTTGATGTGGTTAAGCTCAACATT 649
||||| || ||||| || |||||||||||||||||||| || || || ||||||||||||
Sbjct 675 ATGTCGCAGCAGCATTGTTGGCTCTTTAATACCCCTGTGGACGTCGTCAAGCTCAACATT 734
Query 650 CCTGATTATTTCACTATTATCAAACAGCCTATGGATTTAGGAACTG-TAAAGAGCAAGTT 708
|||||||||||||| ||||||||||| ||||||||||||||||||| |||| ||||||||
Sbjct 735 CCTGATTATTTCACCATTATCAAACATCCTATGGATTTAGGAACTGTTAAA-AGCAAGTT 793
Query 709 AACTTCCGGCACCTATTCAAGCCCATCAGAGTTTTCTGCTGATGTCCGTCTTACTTTCCG 768
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 794 AACTTCCGGCACGTATTCAAGCCCTTCAGAGTTTTCTGCTGATGTCCGTCTTACTTTCCG 853
Query 769 CAATGCAATGACATATAACCCGTCAGATAATAATGTTTATCGTTTCGCTGATACACTCAG 828
|||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 854 CAATGCTATGACTTATAACCCGTCAGATAATAATGTGTATCGCTTCGCTGATACTCTCAG 913
Query 829 CAAGTTTTTTGAAGTGAGGTGGAAAACTTTTAATAAGAAGTCATCCGGAACCAAATCTGA 888
|||||||||||||||||| ||||||||| | | ||||||||||||||||||||||||||
Sbjct 914 CAAGTTTTTTGAAGTGAGATGGAAAACTATCGAGAAGAAGTCATCCGGAACCAAATCTGA 973
Query 889 ACCAAGTAACTTGGGTACTCATGCTCACAAAGATATTGCAATGCCTGAGCCTCTGGCTAA 948
|||||||||||||| ||||| |||||||||||||||||| || ||||||||| |||||||
Sbjct 974 ACCAAGTAACTTGGCTACTCTTGCTCACAAAGATATTGCGATACCTGAGCCTGTGGCTAA 1033
Query 949 GAAGAGAAAGATGAATGCTCTCAACCATGACAGCCTCTTAGAGCCTGCTAAACGGGTTAT 1008
||||||||||||||||||| | || | | |||||||||||||||||||||| ||||||||
Sbjct 1034 GAAGAGAAAGATGAATGCTGTGAAACGTAACAGCCTCTTAGAGCCTGCTAAGCGGGTTAT 1093
Query 1009 GACAGATGAGGATAGAGTTAAGCTTGGCAGAGATTTGGGGTCCTTGACAGAATTCCCGGT 1068
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1094 GACAGATGAGGATAGAGTAAAGCTTGGCAGAGATTTGGGGTCCTTGACAGAATTCCCTGT 1153
Query 1069 ACAGATAATAAATTTCCTGAGAGGTCACAGCTCCAAGGAAGGGAGATCTGGAGATGATGA 1128
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1154 ACAGATAATAAATTTCCTGAGAGATCACAGCTCCAAGGAAGAGAGATCTGGAGATGATGA 1213
Query 1129 GATAGAGATTGACATTAATGATCTCACTCATGATGCCTTGTTCCAGTTGCGGGATCTCTT 1188
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1214 GATAGAGATTGACATCAATGATCTCAGTCATGATGCCTTGTTCCAGTTGCGGGATCTCTT 1273
Query 1189 TGATGAGTTTTTGCGAGAAAATCAAAAGAAAGATGT-AAACGGTGAACCCTGTGAGTTAG 1247
|||||||||| ||||||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct 1274 TGATGAGTTTCTGCGAGAAAATCAAAAGAAAGAT-TCAAACGGTGAACCCTGTGTGTTAG 1332
Query 1248 AGCTTTTAGATGGGTCAGGGCCAGGAAATTCATTGACGCAACACTATGGTGGGAGCGAAA 1307
|||||||| |||||||||||||||||||||||||||||||||||| || |||||| |||
Sbjct 1333 AGCTTTTACATGGGTCAGGGCCAGGAAATTCATTGACGCAACACTGTGATGGGAGTGAAT 1392
Query 1308 TGGAGGACGAGGATGTTGACATTGGTAATTATGAGCACCCTAGATCTCACATCCCATCTG 1367
|||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||
Sbjct 1393 TGGAGGACGAGGATGTTGACATTGGTAATTATGAGCACCCTATATCTCACATCTCAACTG 1452
Query 1368 TCAGGACAGAAAAAGATTCCGTCGGCGGATTAAATCAGCTGGAAGATGCATCCAAAGGG- 1426
|||| |||||||||||||||||||| ||||| |||||| ||||||||||||||| ||||
Sbjct 1453 TCAGAACAGAAAAAGATTCCGTCGGTGGATTGAATCAGATGGAAGATGCATCCAGAGGGA 1512
Query 1427 AG----G-CTAATTGAGGGGGCAGATGGTCATCAAGATGGAAATAGTGCTCCGAATGAGA 1481
|| | || ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1513 AGCTAAGTCTTATTGAGGGGGCAGATGGTCATCAAGATGGAAATAGTGCTCCAAAAGAGA 1572
Query 1482 AGCAACTACCTCCAGAAAAGCGTTACAGGGCTGCTCTATTGAAAGATCGATTTGCGGATA 1541
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1573 AGGAACTACCTCCAGAAAAGCGTTACAGGGCTGCTCTATTGAAAAATCGATTTGCGGATA 1632
Query 1542 TAATCTTGAAGGCTAAAGAGATAACTCTTAATCAGAATGAGAAACGCGACCCAGAGAAAC 1601
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1633 TAATCTTGAAGGCTCAAGAGATAACTCTTAATCAGAATGAGAAACGAGACCCAGAGACAC 1692
Query 1602 TGCGACGTGAGAAGGAAGAACTCGAATTGCAAaagaagaaagaaaaagcacggttacaag 1661
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1693 TGCAACGTGAGAAGGAAGAACTGGAATTGCAAAAGAAGAAAGAAAAAGCACGGTTACAAG 1752
Query 1662 cagaagccaaggaagctgaagaagcttgtagaaaagCTGAGGCACGAGCTGCAGTTGAAG 1721
|||||||||||||||||||||||||| |||||||||||||||||| | || | |
Sbjct 1753 CAGAAGCCAAGGAAGCTGAAGAAGCTCGTAGAAAAGCTGAGGCAC-A-----AG---A-G 1802
Query 1722 CTGCGGCTGAGGCTAAGAGGAAACTGGAACTTGAAAGAAAAGCAGCACGGCAGGCATTGC 1781
|| | | | |||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1803 --GC---T-A----A-GAGGAAACTGGAACTTGAAAGAGAAGCAGCCCGGCAGGCATTGC 1851
Query 1782 TTGAGATGGAGAAGTCGGTTGAAATAAATGAGAACACAAGGTTTCTCAAGGACCTAGAGC 1841
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1852 TTGAGATGGAGAAGTCGGTTGAAATAAATGAGAACACAAGGTTTCTCAAGGACCTAGAAC 1911
Query 1842 TGCTTAAAACGGTTAACACGGACCAGTTAAGAAATCTAAGAGATGTTGGCTCTGACTCTG 1901
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1912 TGCTCAAAACGGTTAACACGGACCAGTTACGAAATCTAAGAGATGTTGGCTCTGAGTCTG 1971
Query 1902 ATGGGTTGGAAGTTTTTGGGTTTGGAGGAAGCAATCCACTAGAGCAGCTGGGGCTCTTTA 1961
||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 1972 ATGGGTTGGCTGTATTTGGGTTTGGAGGAAGTAATCCTCTAGAGCAGCTGGGGCTATTTA 2031
Query 1962 TGAAACATGATGAGGATGAAGATGAAGCCGACCTGCTTGCGTTTCCAGATCCCGGCAACG 2021
|||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| |
Sbjct 2032 TGAAACATGAGGAGGATGAAGATGAATCCGACATGCTTGCGTTTCCAGATCCCGGCAATG 2091
Query 2022 AAGTAGAAGAGGGTGAAATCGACTGAGATTCATGAGTGTGTTGTGTCTTGGGTAATGGCA 2081
||||||||||||||||||||||||||||||||||||||| | ||||||||| ||| |||
Sbjct 2092 AAGTAGAAGAGGGTGAAATCGACTGAGATTCATGAGTGT-T-GTGTCTTGGATAACAGCA 2149
Query 2082 GTCGAGTGTACATGAATCAGAGAGCTGTTGTAAAAAATAATAGTTGGATTGATATTTAAC 2141
||| ||||||||||| | ||||||||||||| |||||| ||||||||||||||
Sbjct 2150 GTCAAGTGTACATGAGT--------TGTTGTAAAAAATGATAGTTAGATTGATATTTAAC 2201
Query 2142 CAATGCGATGGCTTTTTATCCGAGTAAACAAACACTAGCACTTTATCTCGTGAGTCTAAA 2201
|||||||||||| |||||||||||||||||| || || |||||| | | |||||| |||
Sbjct 2202 CAATGCGATGGCATTTTATCCGAGTAAACAATCAATAACACTTTGTGTAGTGAGTA-AAA 2260
Query 2202 TTTTGTTTAACTCAATAAACCAATGAC 2228
||||| |||| ||||||||||||||||
Sbjct 2261 TTTTGGTTAATTCAATAAACCAATGAC 2287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110541600090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5