BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477341
Length=326
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01730.1 | Symbols: | unknown protein; Has 8 Blast hits to ... 346 8e-95
> AT3G01730.1 | Symbols: | unknown protein; Has 8 Blast hits to
8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:266558-266987 FORWARD LENGTH=430
Length=430
Score = 346 bits (187), Expect = 8e-95
Identities = 297/345 (86%), Gaps = 27/345 (8%)
Strand=Plus/Plus
Query 1 GACTGTATCAACTAACTAAAAA-AGAGAATGACAAATTAGGAGAAAGAGAAGAGATCAAA 59
|||||||||||||||||||||| | |||| || |||||| ||||||||| |||||||||
Sbjct 1 GACTGTATCAACTAACTAAAAATACAGAAAGAGAAATTAAAAGAAAGAGAGGAGATCAAA 60
Query 60 TATTGCAGCAATGAGATCTTTCAGCTTAATGATATGTATTCTCATCTTGGCAATGTTGAT 119
||||| |||||||||| |||||||||||||||||||| ||||| ||||||||| ||||||
Sbjct 61 TATTGTAGCAATGAGAGCTTTCAGCTTAATGATATGTGTTCTCGTCTTGGCAACGTTGAT 120
Query 120 TATGGTGGCCGAGTC---G---TCCTATGGTGGGAACGACGAGAAACACACTGCTCCTCC 173
||||||||||||||| | |||||| |||||||||||||| ||||| | ||||
Sbjct 121 TATGGTGGCCGAGTCTAAGTCTTCCTATAGTGGGAACGACGAG----ACACT-C-ACTCC 174
Query 174 TCCTCCTCCAATGGCTCCTTCACCATCACC-A-----ACT------GGTCACTTTGGTGA 221
||||||||| |||||||||||||| ||||| | ||| ||||||||||||||
Sbjct 175 TCCTCCTCCGATGGCTCCTTCACCGTCACCAACTGGTACTGACGGCGGTCACTTTGGTGA 234
Query 222 ACCCAAGACGCTTCCACCACCTCCAAACGCCGCCACTTTCCCCACTTGCCCGCTGTTTAT 281
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 235 ACCCAAGACGCTTCTACCACCTCCAAACGCCGCCACTTTCACCACTTGCCCGCTGTTAAT 294
Query 282 CACCACAACATTGATTAGTGTCATGGCTTTCAG-CTTCTAATATA 325
|||| ||||||||||||||| | |||||||| | |||||||||||
Sbjct 295 CACCTCAACATTGATTAGTGCCTTGGCTTTC-GTCTTCTAATATA 338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15180860198
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5