BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477342
Length=2818
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01720.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 4447 0.0
> AT3G01720.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G25265.1);
Has 374 Blast hits to 211 proteins in 23 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 316;
Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
| chr3:262251-265905 REVERSE LENGTH=2867
Length=2867
Score = 4447 bits (2408), Expect = 0.0
Identities = 2696/2828 (95%), Gaps = 48/2828 (2%)
Strand=Plus/Plus
Query 1 TGTGTATGTAAAATGGTTGCCGGAGTCCATGGCAGCCGAGA-TTGGGCGATTCAAAGAGA 59
||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 2 TGTGTATGTAAAATGGTTGCCGGAGTCCATGGCAGCCAAAACTTGGGCGATTCAAAGAGA 61
Query 60 GAATCTTCTTTGATTTTTTATTCAAATTCCAACGATCTCAAATTTTTGTTATTTATTGAT 119
||| |||||||||| |||||||||| |||| |||||||| ||||| ||||||||| ||
Sbjct 62 GAA---TCTTTGATTTATTATTCAAATGCCAAAGATCTCAACTTTTT-TTATTTATTAAT 117
Query 120 TAGTCACAAGTGGCAGTTCTTCGTGGTCGCCACTACCTAATCATAACCATTTG---GGTT 176
||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 118 TAGTCACAAGTGGCAGTTCTTCGTGGTCGCCACTACCTAATCATAACCA-TCGACAGGTT 176
Query 177 TAT--AGAAGAACAAGGTC-ACGCATCGCCATGGATCAATCATCCTCCATGCATTGACtt 233
||| |||||||| ||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TATAGAGAAGAACTAGG-CAACGCATCGCCATGGATCAATCATCCTCCATGCATTGACTT 235
Query 234 ttttt---t-----------a-t-ttttACTTTAGTTAGGG-TTTGAAATTCGATAAATC 276
||||| | | | | | ||||||||||| |||||||||||| |||||
Sbjct 236 TTTTTAGATCGGAGGAAAAAAGTATGCAAATTTAGTTAGGGTTTTGAAATTCGA-AAATC 294
Query 277 GAGATGCGGTGGGATTTGATCACGGCGATTGTGGCTGCGCTGGTGGTGTCGGGTTTGGCG 336
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 295 GAGATGCGGTGGGATTTGATCACGGCGATTGTGGCTGCGCTGGTGGTCTCGGTTTTGGCT 354
Query 337 GATGAATCGGGTCAAAGGGCACCGTATCGGATCCACACGCTGTTCTCGGTGGAGTGCCAG 396
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 355 GATGAATCGGGTCAAATGGCACCGTATCGGATCCACACGCTCTTCTCGGTGGAGTGCCAG 414
Query 397 AACTACTTTGATTGGCAGACGGTTGGTTTGATGCACAGCTTCTTGAAATCCGGACAACCC 456
|||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 415 AACTACTTCGATTGGCAGACTGTTGGTTTGATGCACAGCTTCTTGAAATCCGGCCAACCC 474
Query 457 GGTCCGATTACCCGGTTATTGAGCTGTACCGATGAGCAGAAGAAGAATTACAGAGGCATG 516
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 475 GGTCCGATTACCCGGTTATTGAGCTGTACCGATGATCAGAAGAAGACTTACAGAGGCATG 534
Query 517 AATCTCGCTCCCACTTTCCAAGTTCCCTCTTGGAGCAGACATCCTAAGACCGGTGACTGG 576
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 535 AATCTCGCTCCCACTTTCGAAGTTCCCTCTTGGAGCAGACATCCTAAGACCGGTGACTGG 594
Query 577 TACCCAGCAATTAACAAACCAGTTGGAGTTCTTTACTGGCTTCAACACAGTGAAGATGCC 636
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 595 TACCCAGCAATTAACAAACCAGTTGGAGTTCTTTACTGGCTTCAACACAGTGAAGAGGCC 654
Query 637 AAGCATGTGGATTGGGTCGTTATTCTTGATGCTGACATGATCATTCGAGGTCCTATCATC 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 AAGCATGTGGATTGGGTCGTTATTCTTGATGCTGACATGATCATTCGAGGTCCTATCATC 714
Query 697 CCTTGGGAACTCGGTGCCGAAAGGGGAAGACCCTTTGCCGCGCATTACGGCTACTTGGTG 756
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 715 CCTTGGGAACTCGGTGCTGAAAGGGGAAGACCCTTTGCCGCCCATTACGGCTACTTGGTG 774
Query 757 GGCTGCGATAACCTCCTTGTGCGGTTGCACACAAAGCATCCTGAACTCTGTGACAAAGTT 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GGCTGCGATAACCTCCTTGTGCGGTTGCACACAAAGCATCCTGAACTCTGTGACAAAGTT 834
Query 817 GGCGGTCTTCTCGCTATGCATATCGACGATCTTCGGGTCCTGGCCCCTCTCTGGCTTTCA 876
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 835 GGCGGTCTTCTCGCTATGCATATCGACGATCTTCGGGTCTTGGCCCCTCTCTGGCTGTCA 894
Query 877 AAGACTGAAGATGTTCGCCAAGATACAGCTCACTGGTCCACCAATATCACCGGAGATGTT 936
||||| ||||| |||||||||||||||||||||||| |||||||| | ||||||||| ||
Sbjct 895 AAGACCGAAGACGTTCGCCAAGATACAGCTCACTGGACCACCAATCTTACCGGAGATATT 954
Query 937 TACGGCAAAGGTTGGATCAGCGAGATGTATGGTTACTCCTTCGGTGCTGCAGAAGCAGGA 996
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 955 TACGGCAAAGGTTGGATCAGTGAGATGTATGGTTACTCCTTCGGTGCTGCAGAGGCAGGA 1014
Query 997 CTTAAGCACAAGATTAATGACGACTTGATGATATATCCTGGGTATGTTCCACGAGAAGGT 1056
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1015 CTTAAGCACAAGATTAATGACGACTTGATGATATATCCCGGGTATGTTCCACGAGAAGGT 1074
Query 1057 GTTGAGCCTGTTCTTATGCATTACGGTTTACCTTTTTCCATTGGGAACTGGTCTTTCACT 1116
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1075 GTTGAGCCTGTTCTTATGCATTATGGTTTACCTTTTTCCATTGGGAACTGGTCTTTCACT 1134
Query 1117 AAACTGGACCACCACGAAGACAATATAGTCTATGACTGCAATCGTCTCTTCCCCGAGCCT 1176
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1135 AAACTGGACCACCACGAAGACAATATAGTCTACGACTGCAATCGCCTCTTCCCCGAGCCT 1194
Query 1177 CCATATCCAAGAGAGGTTAAAATAATGGAACCTGATCCGTCTAAACGAAGAGGTCTAATT 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 CCATATCCAAGAGAGGTTAAAATAATGGAACCTGATCCGTCTAAACGAAGAGGTCTAATT 1254
Query 1237 TTGAGTCTAGAATGCATGAATACATTGAACGAGGGACTCATACTGCATCACGCAGAAAAT 1296
|||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1255 TTGAGTTTGGAATGCATGAATACATTGAACGAGGGACTCATACTGCGTCACGCAGAAAAT 1314
Query 1297 GGGTGTCCAAAACCAAAGTGGACCAAATACTTGAGTTTTCTGAAGAGCAAAACTTTCATG 1356
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1315 GGGTGTCCAAAACCAAAGTGGACCAAATACTTGAGCTTTCTGAAGAGCAAAACTTTCATG 1374
Query 1357 GAGTTAACAAAGCCTAAATTGCTTGCACCTGGAAGTGTACATATCCTGCCAGATCAACAC 1416
|||||||||| ||||||| |||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1375 GAGTTAACAAGGCCTAAACTGCTTGCACCAGGAAGTGTACATATCCTGCCAGACCAACAC 1434
Query 1417 GAGCCGCCACCCATTGATGAATTCAAAGGACCTTATCCAAAGATTCACACACTGTTTTCT 1476
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1435 GAGCCGCCACCCATTGATGAATTCAAAGGAACTTATCCAAAGATTCACACACTGTTTTCT 1494
Query 1477 ACTGAGTGCACGACTTATTTCGATTGGCAAACAGTCGGCTTCATGCACAGTTTCCGCCAG 1536
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1495 ACTGAGTGCACGACTTATTTCGATTGGCAAACAGTGGGCTTCATGCACAGTTTCCGCCAG 1554
Query 1537 AGCGGCCAACCTGGAAATATCACTCGGCTTCTCAGTTGCACAGATGAAGCTCTTAAAAAC 1596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AGCGGCCAACCTGGAAATATCACTCGGCTTCTCAGTTGCACAGATGAAGCTCTTAAAAAC 1614
Query 1597 TATAAAGGTCATGACTTGGCCCCGACGCATTATGTTCCTTCGATGAGCAGACATCCTCTA 1656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 TATAAAGGTCATGACTTGGCCCCGACGCATTATGTTCCTTCGATGAGCAGACATCCTCTA 1674
Query 1657 ACAGGCGATTGGTATCCGGCAATTAACAAACCAGCAGCGGTTGTCCATTGGCTTCACCAC 1716
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1675 ACAGGCGATTGGTACCCGGCAATTAACAAACCAGCAGCAGTTGTCCATTGGCTTCACCAC 1734
Query 1717 ACGAACATTGATGCAGAGTACGTAGTAATTCTTGATGCTGACATGATCCTCCGAGGACCC 1776
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1735 ACGAACATTGATGCAGAGTACGTAGTAATTCTTGATGCTGACATGATCCTTCGTGGACCC 1794
Query 1777 ATCACACCTTGGGAGTTTAAGGCAGCTCGAGGCCGACCAGTTTCGACTCCTTACGACTAT 1836
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1795 ATCACACCTTGGGAGTTTAAGGCAGCTCGAGGCCGACCAGTTTCAACTCCTTACGACTAT 1854
Query 1837 CTTATTGGATGTGATAACGACCTTGCAAGACTTCACACGCGTAATCCCGAAGCTTGTGAT 1896
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1855 CTTATTGGATGTGATAATGACCTTGCAAGACTTCACACGCGTAATCCCGAGGCTTGTGAT 1914
Query 1897 AAAGTTGGTGGAGTCATTATAATGCACATAGAGGATCTCCGGAAATTCGCAATGTACTGG 1956
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1915 AAAGTTGGTGGAGTCATTATAATGCACATAGAGGATCTCCGGAAATTTGCAATGTACTGG 1974
Query 1957 TTGCTTAAAACCCAGGAGGTTCGAGCAGACAAAGAACACTATGGGAAGGAGTTAACTGGG 2016
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1975 TTGCTTAAAACCCAGGAGGTTCGAGCAGACAAAGAACACTACGGGAAGGAGTTAACTGGG 2034
Query 2017 GATATATATGAATCCGGTTGGATCAGCGAAATGTATGGTTATTCATTTGGTGCTGCAGAG 2076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2035 GATATATATGAATCCGGTTGGATCAGCGAAATGTATGGTTATTCATTTGGTGCTGCAGAG 2094
Query 2077 CTGAATTTGCGGCATATCATAAACAAAGAGATTTTGATTTATCCCGGGTATGTTCCTGAA 2136
|||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 2095 CTGAATTTGCGGCATAGCATAAACAAAGAAATTATGATTTATCCCGGGTATGTTCCTGAA 2154
Query 2137 CCTGGTGCTGACTATCGAGTTTTCCACTACGGTCTTGAGTTCAAAGTCGGAAATTGGAGC 2196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2155 CCTGGTGCTGACTATCGAGTTTTCCACTACGGTCTTGAGTTCAAAGTCGGAAATTGGAGC 2214
Query 2197 TTTGACAAGGCGAATTGGAGGAACACTGATTTGATCAACAAATGCTGGGCAAAGTTTCCA 2256
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2215 TTTGACAAGGCGAACTGGAGGAACACTGATTTGATCAACAAATGCTGGGCAAAGTTTCCA 2274
Query 2257 GACCCGCCTAGTCCTTCGGCAGTCCATCAAACAGACAATGATCTACGGCAAAGAGACCTT 2316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2275 GACCCGCCTAGTCCTTCGGCAGTCCATCAAACAGACAATGATCTACGGCAAAGAGACCTT 2334
Query 2317 CTGAGCATTGAATGTGGACAGAAGCTGAACGAAGCTCTGTATCTGCATCACAAGAGAAGG 2376
|| ||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||
Sbjct 2335 CTCAGCATTGAATGTGGACAGAAGCTAAACGAAGCTCTATTTCTGCATCACAAGAGAAGA 2394
Query 2377 AATTGCCCTGAACCTGGATCTGAATCGACGGAGAAGATCTCGGTTTCGAGAAAAGTTGGT 2436
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 2395 AATTGCCCTGAACCTGGATCAGAATCGACTGAGAAGATCTCGGTTTCGAGAAAAGTTGGT 2454
Query 2437 AACATTGAAACGAAAGAAACCCAAGGAAGCGATGATACAAAAGAGTCAAGTGGT--G-C- 2492
||||||||||| ||| ||||||||||||||||||| |||||||||||||||||| | |
Sbjct 2455 AACATTGAAACAAAACAAACCCAAGGAAGCGATGAAACAAAAGAGTCAAGTGGTTCGTCC 2514
Query 2493 ---T--GAAGGGAGATTCAGCACGTTGAAATTATGGGTGATTGCTCTGTGGTTGATATCT 2547
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2515 GAGTCTGAAGGGAGATTCAGCACGTTGAAATTATGGGTGATTGCGCTGTGGTTGATATCT 2574
Query 2548 GGTGTAGGGTTCTTGGTAGTGATGCTTTTGGTGTTCTCGACTCGTAGAGGCAGAGGAACA 2607
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2575 GGAGTAGGGTTCTTGGTAGTGATGCTATTGGTGTTCTCGACTCGTAGAGGCAGAGGAACA 2634
Query 2608 ACAAGAGGGAAAGGTTACAGAAACAAGAGACGAACTTCGTACTCGAACACAGGTTTCTTG 2667
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2635 ACAAGAGGGAAAGGTTACAGAAACAAGAGACGAACTTCTTACTCGAACACAGGTTTCTTG 2694
Query 2668 GACACAAAATGATCGAGAGATATCTGTTAGAATGTGAGCAATGTGTAGATACAA-CTAAA 2726
||||| |||||||| | | ||||||||||| |||||||||||||||||||| | ||
Sbjct 2695 GACACTAAATGATC-AT---T-TCTGTTAGAATCTGAGCAATGTGTAGATACAAAC-AA- 2747
Query 2727 CCAAACCaaaaaaaGGTGAGACATTTTGCTTCCCTCAAAGTCATATAGGTTTCTTTGTAT 2786
| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 2748 CTAAACCAAAAAAAGGTGAGACATTTTGCTTCCCCCAAAGTCATATAGGTTTGTTTGTAT 2807
Query 2787 TCTTTTAA 2794
||||||||
Sbjct 2808 TCTTTTAA 2815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 140015937913
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5