BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477343
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01710.1 | Symbols: | TPX2 (targeting protein for Xklp2) pr... 1899 0.0
AT1G68760.1 | Symbols: ATNUDT1, ATNUDX1, NUDX1 | nudix hydrolas... 121 2e-26
AT5G39535.1 | Symbols: | pre-tRNA | chr5:15827026-15827097 REV... 119 9e-26
AT4G03135.1 | Symbols: | pre-tRNA | chr4:1390895-1390966 FORWA... 119 9e-26
AT3G29095.1 | Symbols: | pre-tRNA | chr3:11075578-11075649 FOR... 119 9e-26
AT3G01705.1 | Symbols: | pre-tRNA | chr3:259634-259705 FORWARD... 119 9e-26
AT3G52285.1 | Symbols: | pre-tRNA | chr3:19392674-19392745 REV... 119 9e-26
AT2G33920.1 | Symbols: | pre-tRNA | chr2:14353143-14353214 FOR... 119 9e-26
AT2G33960.1 | Symbols: | pre-tRNA | chr2:14356055-14356126 FOR... 119 9e-26
AT1G68770.1 | Symbols: | pre-tRNA | chr1:25829654-25829725 FOR... 119 9e-26
AT1G28870.1 | Symbols: | pre-tRNA | chr1:10099425-10099496 FOR... 119 9e-26
AT1G28820.1 | Symbols: | pre-tRNA | chr1:10096951-10097022 FOR... 119 9e-26
AT3G21475.1 | Symbols: | pre-tRNA | chr3:7567394-7567465 REVER... 113 4e-24
AT1G59880.1 | Symbols: | pre-tRNA | chr1:22040612-22040683 REV... 113 4e-24
AT1G08950.1 | Symbols: | pre-tRNA | chr1:2879303-2879374 FORWA... 113 4e-24
AT1G10440.1 | Symbols: | pre-tRNA | chr1:3431185-3431256 REVER... 113 4e-24
AT1G70050.1 | Symbols: | pre-tRNA | chr1:26382154-26382225 REV... 108 2e-22
AT1G45236.1 | Symbols: | pre-tRNA | chr1:17157360-17157431 FOR... 97.1 4e-19
AT5G40700.2 | Symbols: | unknown protein; BEST Arabidopsis tha... 93.5 5e-18
> AT3G01710.1 | Symbols: | TPX2 (targeting protein for Xklp2)
protein family | chr3:259639-261840 REVERSE LENGTH=1591
Length=1591
Score = 1899 bits (1028), Expect = 0.0
Identities = 1335/1471 (91%), Gaps = 70/1471 (5%)
Strand=Plus/Plus
Query 1 GGAGATTCTCTTGGTGCTTTAGGACAGTCTGTGTCCTTCGGGAGATTCATGTCGGAGAAA 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 154 GGAGATTCTCTTGGTGCTTTAGGACAGTCTGTGTCCTTCGGAAGATTCATGTCGGAGAAA 213
Query 61 CTTGACTGGGAAAAATGGTCTGCTTTCTCCACACACAACCCTTATGTGGCGGAAGCAGAG 120
||||||||||| ||||||||||||||||||||||| |||||||| ||||| || ||||||
Sbjct 214 CTTGACTGGGAGAAATGGTCTGCTTTCTCCACACAGAACCCTTACGTGGCTGAGGCAGAG 273
Query 121 AGATACTCAAAGCCCGGATCTGTCGCTCAGAAGAAAGCTTTCTTTGAAGCTCACTACAAG 180
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 274 AGATACTCTAAGCCCGGATCTGTTGCTCAGAAGAAAGCTTTCTTTGAAGCTCACTACAAG 333
Query 181 AAACTCGCTGCTGCTAGAAAAGCTGCTGCTGAAGAGGCCCTCTTGCTTCAGCAGCAAATC 240
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 334 AAAGTCGCTGCTGCTAGAAAAGCTGCTGCTGAAGAGGCACTCTTGCTTCAGCAGCAAATC 393
Query 241 CTTAAACCCCAACC-----AG--T-C----CAAGAAGAAGATATCAATGGAGGAGGAAAC 288
| |||||||||||| || | | ||||||||||||||||||| ||||| |||
Sbjct 394 CCTAAACCCCAACCAGAGAAGTCTCCAGTTCAAGAAGAAGATATCAATGAAGGAGAAAAG 453
Query 289 AAAGATTGGCTGGTCTCGAAACCGGATCTTGAGACTT-CAAGAGGATCTTTAGATGATTC 347
||||||||| ||||||| |||||||||||||||| || |||||||||||||||||| |||
Sbjct 454 AAAGATTGGATGGTCTCAAAACCGGATCTTGAGA-TTCCAAGAGGATCTTTAGATGTTTC 512
Query 348 TGCTGAAATGAAATTCCTAGCAGGAG-AAGAAGG-CGTATTTAGAGGTAATAGACAATCT 405
|||| || ||||||| || ||| ||| ||||||| || |||| | ||||||||||||||
Sbjct 513 TGCTCAATTGAAATTACTTGCA-GAGAAAGAAGGCCG-ATTT--A-GTAATAGACAATCT 567
Query 406 GATGAGAAAGAGAACTGTGGGTTGGCTGAGTCAGAGATCAAT-GCCAAAGTTTCTTCTAC 464
|||||||||||||||||||| |||||||||||||||||||| ||| | | ||
Sbjct 568 GATGAGAAAGAGAACTGTGGCATGGCTGAGTCAGAGATCAATGGCC---G------C-AC 617
Query 465 AGGTGGAGAACATGTGGATGAGGAGAAGCCTATTCTAATGTCTGTAAAGAAGAAATCCAA 524
|| || |||||| || ||||||||||| ||||| |||| |||||| ||||||||||||||
Sbjct 618 AGCTGAAGAACAAGTAGATGAGGAGAAACCTATACTAAAGTCTGTGAAGAAGAAATCCAA 677
Query 525 AGATTCACAACAATCAAAGAGCAGTACTAAATCAAGAGTCTCTAAGTACAATTCATCGGA 584
||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 678 AGATTCACAAC---CAAAGAGTAGTACTAAACCAAGAGTCTCTAAGTACAATTCATCGGA 734
Query 585 GAGGACTCCAAGTCAAAAGTCTGGTAACAAGAGCAGCTCTTACACTTTCACACCTGCAAA 644
||||||||||||| |||||||| ||||||||||||||| ||||||||||| ||||||||
Sbjct 735 GAGGACTCCAAGTAAAAAGTCTAATAACAAGAGCAGCTCGTACACTTTCACGCCTGCAAA 794
Query 645 AGAGTTCAATAGATTGGTGTCCATCATAAGGAAGATTGATGGGTCAAGAGCTTCTTCTAA 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 AGAGTTCAATAGATTGGTGTCCATCATAAGGAAGATTGATGGGTCAAGAGCTTCTTCTAA 854
Query 705 ACCACCCAAAGACTGCAAAACTCCTCTCCGGACACCATCATCAAACAAGGTGTCTGCAAA 764
|||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 855 ACCAACCAAAGACTGCAAAACTCCTCTCCGGACA-C--CATCAAACAAGGTGTCTGCAAA 911
Query 765 GGGAATTGCTGATGATTCTTTGTCCACACCTTTATCTAGT-A-AC-AG--A----AGAGG 815
|||||| | ||| || || ||||||||||||||||| ||| | || || | |||||
Sbjct 912 GGGAATGGTTGAAGACTCCTTGTCCACACCTTTATCGAGTAACACAAGTAAGTGCAGAGG 971
Query 816 GAAGATAGCTCCTGATTCTTCTGCCAAGACAGGTCGAGGAAGATGGAATTTCCTCCCTGC 875
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 GAAGATAGCTCCTAATTCTTCTGCCAAGACAGGTCGAGGAAGATGGAATTTCCTCCCTGC 1031
Query 876 AGAGACACCGAGCTGTTTTACACCGTTTGGCTTaagaacagaggagagggcagagagaag 935
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1032 GGAGACACCGAGCTGTTTTACACCGTTTGGCTTAAGAACAGAGGAGAGAGCAGAGAGAAG 1091
Query 936 aaaaaagaagctagaggagaaaTTCAAAGCAATGGAGCCACAGAACCAGAAGGCAGAGGA 995
||||||||||||||||| ||||||||| | ||||||| |||||||||||||||| |||||
Sbjct 1092 AAAAAAGAAGCTAGAGGGGAAATTCAAGGAAATGGAGACACAGAACCAGAAGGCGGAGGA 1151
Query 996 AAGGAGTGTGGAGAAGGAAGAGAGTAAACTACGGCAAAGGCTATGCTTCAAAGCGAAGCC 1055
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1152 GAGGAGTGTGGAGAAGGAAGAGAGTAAACTAAGGCAAAGGCTATGCTTCAAAGCGAAGCC 1211
Query 1056 ACTTCCAAATTTCTACAAACAGAGACCAAAATCAACTGACCAAACTAAGAAAGCTCTGTT 1115
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1212 ACTTCCAAATTTCTACAAACAGAGACCAAAATCAACAGACCAAACTAAGAAAGCTCTGTT 1271
Query 1116 ACAGTAGCAGAGAGGTGTTAAAGAAACTCCCTATCATCCATCATCTTACAGAGAGATATT 1175
|||||||||||||||| ||| |||||||||||||||| |||| | || ||||||||||||
Sbjct 1272 ACAGTAGCAGAGAGGTCTTACAGAAACTCCCTATCAT-CATC-T-TT-CAGAGAGATATT 1327
Query 1176 GCGCGGACTTAGCGCCTGTGGCTGTGTGGAGAACTATCAAAACCGGTTTGCCTCaaaaaa 1235
|||| ||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||
Sbjct 1328 GCGCTGACTTAGCGCCTGTGGCTGTGGGGAGAACTATCAAAACCGGATTGCCTC-AAAAA 1386
Query 1236 aGGATTAGTTTGGAATTGTTGAC--A---TATTTGGTTTTATTCCAAGAA-GAAGTATTG 1289
||||||||||||||||||||||| | ||||||||||||||||||||| ||| |||||
Sbjct 1387 AGGATTAGTTTGGAATTGTTGACATACTGTATTTGGTTTTATTCCAAGAAGGAA-TATTG 1445
Query 1290 AATTTTACTAGATTGCATTGTATGAATGAATTATTTGTAAAC-TTG-TTATATATGCTTT 1347
|||||||||||||||||||| | ||||| ||||||||||| ||| ||||||||| |||
Sbjct 1446 AATTTTACTAGATTGCATTG--T--ATGAA-TATTTGTAAACTTTGTTTATATATGATTT 1500
Query 1348 GAAAA-AGGAAAGGAGaaaaaaaaaaGGGGGCATTCCGAGAATTGAACTCGGGACCTCTC 1406
||||| | ||| | || ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1501 GAAAACA-CAAA--ATAAGAAAGAAAGGGGGCATTCCGAGAATTGAACTCGGGACCTCTC 1557
Query 1407 GCACCCTAAGCGAGAATCATACCACTAGACC 1437
|||||||||||||||||||||||||||||||
Sbjct 1558 GCACCCTAAGCGAGAATCATACCACTAGACC 1588
> AT1G68760.1 | Symbols: ATNUDT1, ATNUDX1, NUDX1 | nudix hydrolase
1 | chr1:25829042-25829813 FORWARD LENGTH=698
Length=698
Score = 121 bits (65), Expect = 2e-26
Identities = 70/72 (97%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 1367 aaaaaaG-GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCA 1425
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 AAAAGAGAGGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCA 559
Query 1426 TACCACTAGACC 1437
||||||||||||
Sbjct 558 TACCACTAGACC 547
> AT5G39535.1 | Symbols: | pre-tRNA | chr5:15827026-15827097 REVERSE
LENGTH=72
Length=72
Score = 119 bits (64), Expect = 9e-26
Identities = 64/64 (100%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 1374 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 13
Query 1434 GACC 1437
||||
Sbjct 12 GACC 9
> AT4G03135.1 | Symbols: | pre-tRNA | chr4:1390895-1390966 FORWARD
LENGTH=72
Length=72
Score = 119 bits (64), Expect = 9e-26
Identities = 64/64 (100%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 1374 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 13
Query 1434 GACC 1437
||||
Sbjct 12 GACC 9
> AT3G29095.1 | Symbols: | pre-tRNA | chr3:11075578-11075649 FORWARD
LENGTH=72
Length=72
Score = 119 bits (64), Expect = 9e-26
Identities = 64/64 (100%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 1374 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 13
Query 1434 GACC 1437
||||
Sbjct 12 GACC 9
> AT3G01705.1 | Symbols: | pre-tRNA | chr3:259634-259705 FORWARD
LENGTH=72
Length=72
Score = 119 bits (64), Expect = 9e-26
Identities = 64/64 (100%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 1374 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 13
Query 1434 GACC 1437
||||
Sbjct 12 GACC 9
> AT3G52285.1 | Symbols: | pre-tRNA | chr3:19392674-19392745 REVERSE
LENGTH=72
Length=72
Score = 119 bits (64), Expect = 9e-26
Identities = 64/64 (100%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 1374 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 13
Query 1434 GACC 1437
||||
Sbjct 12 GACC 9
> AT2G33920.1 | Symbols: | pre-tRNA | chr2:14353143-14353214 FORWARD
LENGTH=72
Length=72
Score = 119 bits (64), Expect = 9e-26
Identities = 64/64 (100%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 1374 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 13
Query 1434 GACC 1437
||||
Sbjct 12 GACC 9
> AT2G33960.1 | Symbols: | pre-tRNA | chr2:14356055-14356126 FORWARD
LENGTH=72
Length=72
Score = 119 bits (64), Expect = 9e-26
Identities = 64/64 (100%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 1374 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 13
Query 1434 GACC 1437
||||
Sbjct 12 GACC 9
> AT1G68770.1 | Symbols: | pre-tRNA | chr1:25829654-25829725 FORWARD
LENGTH=72
Length=72
Score = 119 bits (64), Expect = 9e-26
Identities = 64/64 (100%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 1374 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 13
Query 1434 GACC 1437
||||
Sbjct 12 GACC 9
> AT1G28870.1 | Symbols: | pre-tRNA | chr1:10099425-10099496 FORWARD
LENGTH=72
Length=72
Score = 119 bits (64), Expect = 9e-26
Identities = 64/64 (100%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 1374 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 13
Query 1434 GACC 1437
||||
Sbjct 12 GACC 9
> AT1G28820.1 | Symbols: | pre-tRNA | chr1:10096951-10097022 FORWARD
LENGTH=72
Length=72
Score = 119 bits (64), Expect = 9e-26
Identities = 64/64 (100%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 1374 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 13
Query 1434 GACC 1437
||||
Sbjct 12 GACC 9
> AT3G21475.1 | Symbols: | pre-tRNA | chr3:7567394-7567465 REVERSE
LENGTH=72
Length=72
Score = 113 bits (61), Expect = 4e-24
Identities = 63/64 (98%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 1374 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 1433
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GGGGCGTTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 13
Query 1434 GACC 1437
||||
Sbjct 12 GACC 9
> AT1G59880.1 | Symbols: | pre-tRNA | chr1:22040612-22040683 REVERSE
LENGTH=72
Length=72
Score = 113 bits (61), Expect = 4e-24
Identities = 63/64 (98%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 1374 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 1433
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GGGGCGTTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 13
Query 1434 GACC 1437
||||
Sbjct 12 GACC 9
> AT1G08950.1 | Symbols: | pre-tRNA | chr1:2879303-2879374 FORWARD
LENGTH=72
Length=72
Score = 113 bits (61), Expect = 4e-24
Identities = 63/64 (98%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 1374 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 1433
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GGGGCGTTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 13
Query 1434 GACC 1437
||||
Sbjct 12 GACC 9
> AT1G10440.1 | Symbols: | pre-tRNA | chr1:3431185-3431256 REVERSE
LENGTH=72
Length=72
Score = 113 bits (61), Expect = 4e-24
Identities = 63/64 (98%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 1374 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 1433
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GGGGCGTTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 13
Query 1434 GACC 1437
||||
Sbjct 12 GACC 9
> AT1G70050.1 | Symbols: | pre-tRNA | chr1:26382154-26382225 REVERSE
LENGTH=72
Length=72
Score = 108 bits (58), Expect = 2e-22
Identities = 62/64 (97%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 1374 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 1433
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 72 GGGGCATTCGGAGAATTGAACTCCGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 13
Query 1434 GACC 1437
||||
Sbjct 12 GACC 9
> AT1G45236.1 | Symbols: | pre-tRNA | chr1:17157360-17157431 FORWARD
LENGTH=72
Length=72
Score = 97.1 bits (52), Expect = 4e-19
Identities = 60/64 (94%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 1374 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 1433
||||||||| |||||||||||||||||||||||||||| ||||||| ||||| |||||||
Sbjct 72 GGGGCATTCTGAGAATTGAACTCGGGACCTCTCGCACCTTAAGCGAAAATCAAACCACTA 13
Query 1434 GACC 1437
||||
Sbjct 12 GACC 9
> AT5G40700.2 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G27350.1);
Has 475 Blast hits to 414 proteins in 93 species: Archae -
0; Bacteria - 43; Metazoa - 127; Fungi - 17; Plants - 143;
Viruses - 7; Other Eukaryotes - 138 (source: NCBI BLink). |
chr5:16291890-16293512 REVERSE LENGTH=1138
Length=1138
Score = 93.5 bits (50), Expect = 5e-18
Identities = 119/151 (79%), Gaps = 9/151 (6%)
Strand=Plus/Plus
Query 43 AGATTCATGTCGGAGAAACTTGACTGGGAAAAATGGTC-TGCTTTCTC-CACACACAACC 100
||||||||| | ||||| ||||| |||| |||||||| | ||| || || | | ||
Sbjct 184 AGATTCATGACAGAGAATCTTGAATGGGGGAAATGGTCAAG-TTTTTCGCATA-AGAA-- 239
Query 101 CTTATGTGGCGGAAGCAGAG-AGATACTCAAAGCCCGGATCTGTCGCTCAGAAGAAAGCT 159
||||| | ||||| ||| || | ||| |||| |||||||| |||||||||||||||
Sbjct 240 -GTATGTCGATGAAGCTGAGAAG-TTCTCTCAGCCTGGATCTGTTGCTCAGAAGAAAGCT 297
Query 160 TTCTTTGAAGCTCACTACAAGAAACTCGCTG 190
|||||||||||||| ||||||||| | ||||
Sbjct 298 TTCTTTGAAGCTCATTACAAGAAAATAGCTG 328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70832968995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5