BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477345
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01700.1 | Symbols: AGP11, ATAGP11 | arabinogalactan protein... 743 0.0
> AT3G01700.1 | Symbols: AGP11, ATAGP11 | arabinogalactan protein
11 | chr3:258879-259631 FORWARD LENGTH=753
Length=753
Score = 743 bits (402), Expect = 0.0
Identities = 549/615 (89%), Gaps = 29/615 (5%)
Strand=Plus/Plus
Query 1 ATCTGAAGCTTCTGCAGTATTCAGAACAAAATAAATTATACTGCTTTAGCTTTGGAACAA 60
||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||
Sbjct 1 ATCTGAAGCTTCTGCAGTATTCA-AAC-AAATAAAATATACTGCTTTAGCTTTGG----- 53
Query 61 CAACACCTCCTCTTTTTAATCTCTATAATTATATTTTTAAAATTaaaaaaaaaaaaaaTG 120
|||||||||||| |||||||||||| |||| ||| || ||| | |||| ||||
Sbjct 54 --ACACCTCCTCTTACTAATCTCTATAACTATA--TTT--AA--AAAGTAGAAAATAATG 105
Query 121 GCACGTCAAATTGTCGTATTTGCCCTCTTGGCTTTGGCCGTGGCCACCGCATTCGCCGCC 180
||||||| | |||||||| ||||||| |||||||||||||||| ||||| ||||||||||
Sbjct 106 GCACGTCTATTTGTCGTAGTTGCCCTTTTGGCTTTGGCCGTGGGCACCGTATTCGCCGCC 165
Query 181 GATGCACCTTCAGCTGCACCCACCGCCTCTCCGACCAAAGCCCCCACCACCAAGGCTCCT 240
||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||
Sbjct 166 GATGCACCTTCAGCTGCACCCACCGCCTCACCAACCAAA-TCCCCA--ACCAAGGCTCCT 222
Query 241 GCAGCTGCACCCAAATCCTCCGCCGCCGCACCGAAAGCATCATCCCCTGTTGCAGAGGAA 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 223 GCCGCTGCACCCAAATCCTCCGCCGCCGCACCGAAAGCATCATCCCCTGTTGCTGAGGAA 282
Query 301 CCCACCTCC-GAAGACGACTATTCGGCAGCCACCCCCAGTGACTCCGCCGAGGCACCCAC 359
|||||| || ||||||||||| || ||||||| |||||||||||||||||||||||||||
Sbjct 283 CCCACC-CCTGAAGACGACTACTCTGCAGCCAGCCCCAGTGACTCCGCCGAGGCACCCAC 341
Query 360 CGTCTCCTCCCCACCGGCTCCTACCCCCGAAGCCGATGGTCCCTCAACCGATGGACCCTC 419
||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 342 CGTCTCCTCCCCACCCGCTCCTACCCCCGAAGCCGATGGTCCCTCCTCCGACGGACCCTC 401
Query 420 ATCTGATGGACCCACCGCCGCCGAGTCACCCAAAAGTGGCGCCACGACTAATGTGAAGCT 479
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 ATCTGATGGACCCGCCGCCGCCGAGTCACCCAAAAGTGGCGCCACGACTAATGTGAAGCT 461
Query 480 CTCCATCGCCGGCACTGTCGCCGCCGCCGGATTCTTCATCTTCTCTCTCTAAGtttt-tt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 462 CTCCATCGCCGGCACTGTCGCCGCCGCCGGATTCTTCATCTTCTCTCTCTAAGTTTTGTT 521
Query 539 tt--A-TTAAACTTGGGACGGAATCATATTAT-CTGTGTTAACATTATGAGAC-G-ATCT 592
|| | ||||||||| |||||||||||| || | ||| | ||||| | | ||||
Sbjct 522 TTTTAATTAAACTTGAGACGGAATCATAAGATTCACA-TTATGAG-ATGAGGCCGTATCT 579
Query 593 CTTTAACTAACTAAC 607
|||||||||||||||
Sbjct 580 CTTTAACTAACTAAC 594
Score = 69.4 bits (37), Expect = 4e-11
Identities = 40/41 (98%), Gaps = 1/41 (2%)
Strand=Plus/Plus
Query 604 TAA-CAAGAGATTGAATGGAGTTATTATTATTACGTACCGT 643
||| |||||||||||||||||||||||||||||||||||||
Sbjct 619 TAATCAAGAGATTGAATGGAGTTATTATTATTACGTACCGT 659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32802897991
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5