BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477346
Length=1309
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01690.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1746 0.0
AT5G14390.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 761 0.0
> AT3G01690.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr3:256537-258547 FORWARD LENGTH=1470
Length=1470
Score = 1746 bits (945), Expect = 0.0
Identities = 1170/1266 (92%), Gaps = 65/1266 (5%)
Strand=Plus/Plus
Query 1 CAATAAAGATTAATGTAGTAAACTAGT-ATGAG-TAAAAGAAGCCAC-TT-TT-G---T- 51
|||| |||||||||||||||| ||||| || | ||||| ||||||| || || | |
Sbjct 29 CAATTAAGATTAATGTAGTAATCTAGTAAT-CGTTAAAA-AAGCCACTTTGTTAGTATTG 86
Query 52 CTTAATActctctctctctctctGTTCCCAA-G-GA-GAAAAGCTTCAATCTCAAAACTT 108
||||||||||||||||||||||||||||||| | || ||||||||||||||||||||| |
Sbjct 87 CTTAATACTCTCTCTCTCTCTCTGTTCCCAAGGAGATGAAAAGCTTCAATCTCAAAACAT 146
Query 109 AGCAGCTCTCTCATCAGTAAACCAAA-CCAAATGCAAGCTGTGTAGAGAGCAAC------ 161
||||||||||||| | ||||||||| ||||||||||||||||||||||| |||
Sbjct 147 AGCAGCTCTCTCA--A-TAAACCAAACCCAAATGCAAGCTGTGTAGAGAGAAACGGAGTG 203
Query 162 -GG-A-GAAGGAGATGGGAGGGGTGACGTCATCGGTGGCGGCTAAGTTCGCCTTCTTCCC 218
|| | |||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 204 AGGAAGGAAGGAGATGGGAGGGGTGACGTCATCGGTGGCGGCGAAGTTTGCCTTCTTCCC 263
Query 219 GCCGAGTCCGCCGTCTTACAAGGTGGTGACCGACGAGCTCACCGGACTGTTGCTTCTCAG 278
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 GCCGAGTCCACCGTCTTACAAGGTGGTGACCGACGAGCTCACCGGACTGTTGCTTCTCAG 323
Query 279 CCCTTTCCCCCACCGCGAAAACGTAGAAATCGTAAAGCTTCCGACGAGGAGAGGCACTGA 338
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||
Sbjct 324 CCCTTTCCCCCACCGCGAAAACGTAGAAATCGTAAAGCTTCGGACCAGGAGAGGCACAGA 383
Query 339 GATCGTGGGCATGTACGTGAGGCATCCCATGGCTACCTCCACGCTCCTCTACTCCCATGG 398
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 384 GATCGTGGGCATGTACGTGAGGCATCCGATGGCTACCTCCACGCTCCTCTACTCCCATGG 443
Query 399 CAACGCCGCCGATCTGGGACAGATGTATGAGCTCTTCATCGAGCTTAGCATCCATCTCAA 458
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 444 CAACGCCGCCGATCTGGGACAGATGTATGAGCTCTTCATTGAGCTTAGCATCCATCTCAA 503
Query 459 GGTTAATCTTATGGGATACGATTACTCCGGGTATGGACAATCTACTGGAAAGCCTAGTGA 518
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 504 GGTTAATCTTATGGGATACGATTACTCCGGGTATGGACAATCTACTGGAAAGCCGAGTGA 563
Query 519 GCATAACACGTATGCTGATATCGAAGCTGTTTATAAGTGTCTTGAAGAAACATTTGGCTC 578
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 564 GCATAACACGTATGCTGATATCGAAGCTGTTTATAAGTGTCTTGAAGAAACCTTTGGCTC 623
Query 579 TAAGCAGGAAGATGTCATTCTCTACGGCCAATCTGTAGGCAGCGGACCTACGTTAGATCT 638
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 624 TAAGCAGGAAGGTGTCATCCTCTACGGCCAATCTGTAGGCAGCGGACCTACGTTAGATCT 683
Query 639 TGCTTCCCGGTTGCCTCAACTTAGAGCCGTCGTCCTTCACAGCCCCATTCTCTCTGGTTT 698
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 684 TGCTTCCCGGTTGCCTCAACTTAGAGCCGTCGTCCTTCACAGCCCCATTCTCTCCGGTTT 743
Query 699 AAGAGTTATGTATGCCGTCAAGAAAACCTACTGGTTCGACATCTACAAGAATATCGACAA 758
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 AAGAGTTATGTATTCCGTCAAGAAAACCTACTGGTTCGACATCTACAAGAATATCGACAA 803
Query 759 AATCCCGCATGTCGATTGCCCGGTTCTCATCATTCATGGAACTTCGGATGAAGTAGTGGA 818
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 804 AATCCCATATGTCGATTGCCCGGTTCTCATCATTCATGGAACTTCGGATGAGGTAGTGGA 863
Query 819 TTGTTCTCATGGGAAACAACTATGGGAACTCTGCAAAGACAAGTACGAGCCGCTCTGGGT 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 TTGTTCTCATGGGAAACAACTATGGGAACTCTGCAAAGACAAGTACGAGCCGCTCTGGGT 923
Query 879 GAAAGGAGGGAACCACTGTGATCTTGAACACTACCCTGAATACATCAGACACCTTAAGAA 938
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 924 GAAAGGAGGGAACCACTGTGATCTTGAACACTACCCTGAATACATTAGACACCTCAAGAA 983
Query 939 ATTCATCA-CGACAGTAGAGAGATTACCTTGTCCGAGGATGAGCAGCGACCAATCAGAGA 997
||||| | | ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 984 GTTCAT-AGCAACAGTAGAGAGATTACCATGTCCGAGGATGAGCAGCGACCAATCAGAGA 1042
Query 998 G-G--A-A-A----------AG------TATGGACAGGAGAGTGAAGCCGAGGCAGAGCA 1036
| | | | | || ||||||||||||||||||||||||||||||||
Sbjct 1043 GAGTGAGAGATGCGCCCCCGAGGAGAAGTATGGACAGGAGAGTGAAGCCGAGGCAGAGCA 1102
Query 1037 CAGAGCGTagagagagagagagagagaAGCCACCAAAGAGTCAGTCGAAGAAGAGTAGCA 1096
||||||||||||||| | ||||| || |||||||||||||||||||||| ||||||||
Sbjct 1103 CAGAGCGTAGAGAGA-A-AGAGA-AG---CCACCAAAGAGTCAGTCGAAGATGAGTAGCA 1156
Query 1097 GCA--AGC----TCAAGATCTC-TTTCGATCATCTTGATCGCTCGCGGAGGAGTGTTGAC 1149
||| ||| |||||||||| ||| ||||| |||||||||||||||||||| ||||||
Sbjct 1157 GCAGCAGCAAGCTCAAGATCTCGTTT-GATCAACTTGATCGCTCGCGGAGGAGCGTTGAC 1215
Query 1150 TGCCATGAAAAGAGTCGGAAGAGCGTTGACCAGATTGAGAGGGGGAGGAAGAGTGTGGAT 1209
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 TGCCATGAAAAGACTCGGAAGAGCGTTGACCAGATTGAGAGGGGGAGGAAGAGTGTGGAT 1275
Query 1210 AGAGTT 1215
|| |||
Sbjct 1276 AG-GTT 1280
> AT5G14390.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:4637312-4639756 REVERSE LENGTH=1530
Length=1530
Score = 761 bits (412), Expect = 0.0
Identities = 686/815 (84%), Gaps = 32/815 (4%)
Strand=Plus/Plus
Query 163 GAGA-AG-GAGATGGGAGGGGTGACGTCATCGGTGGCGGCTAAGTTCGCCTTCTTCCCGC 220
|||| || ||||||||||| ||||||||||| || ||||| |||||||| ||||||||||
Sbjct 171 GAGAGAGAGAGATGGGAGGTGTGACGTCATCAGTTGCGGCGAAGTTCGCTTTCTTCCCGC 230
Query 221 CGAGTCCGCCGTCTTACAAGGTGG-TGACCGACGAGCTCACCGGACTGTTGCTTCTCA-G 278
|||||||| ||||||||||| ||| | | ||| || || ||||||| || ||||| | |
Sbjct 231 CGAGTCCGTCGTCTTACAAGCTGGTTTA-CGATGAACTGACCGGAC--TT-CTTCTGATG 286
Query 279 --CCC-TTTCCCCCACCGCGAAAACGTAGAAATCGTAAAGCTTCCGACGA-GGAGAGGCA 334
||| ||| || ||||| |||||||| |||||| | ||||||||||| | | ||||| |
Sbjct 287 AACCCATTT-CCTCACCGTGAAAACGTTGAAATCCTTAAGCTTCCGAC-ACGTAGAGGAA 344
Query 335 CTGAGATCGTGGGC-ATGTACGTGAGGCATCCCATGGCTACCTCCACGCTCCTCTACTCC 393
| |||||||| ||| |||||||| || ||||| ||||||||||| || || || || |||
Sbjct 345 CAGAGATCGT-GGCTATGTACGTCAGACATCCGATGGCTACCTCTACTCTGCTTTATTCC 403
Query 394 CATGGCAACGCCGCCGATCTGGGACAGATGTATGAGCTCTTCATCGAGCTT-AGCATCCA 452
||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 404 CATGGAAACGCCGCCGATCTGGGCCAGATGTATGAGCTCTTCATCGA-ATTGAGCATCCA 462
Query 453 TCTCAAGGTTAATCTTATGGGATACGATTACTCCGGGTATGGACAATCTACTGGAAAGCC 512
||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 463 TCTTAAGGTTAATCTCATGGGGTACGATTACTCCGGGTATGGACAATCTACTGGAAAGCC 522
Query 513 TAGTGAGCATAACACGTATGCTGATATCGAAGCTGTTTATAAGTGTCTTGAAGAAACATT 572
|||||||| | || ||||||||||||||||||| |||||| |||||||| ||||| |
Sbjct 523 AAGTGAGCACCATACATATGCTGATATCGAAGCTGCTTATAAATGTCTTGAGGAAACCTA 582
Query 573 TGGCTCTAAGCAGGAAGATGTCATTCTCTACGGCCAATCTGTAGGCAGCGGACCTACGTT 632
||| | || |||||||| | || || || |||||||| || || || |||||||| ||
Sbjct 583 TGGAGCAAAACAGGAAGACATAATCCTTTATGGCCAATCCGTTGGAAGTGGACCTACATT 642
Query 633 AGATCTTGCTTCCCGGTTGCCTCAACTTA-GAGCCG-TCGTCCTTCACAGCCCCATTCTC 690
|||||||||| | |||||||||||| ||| |||| | | || || || ||||| |||||
Sbjct 643 AGATCTTGCTGCTCGGTTGCCTCAA-TTAAGAGCTGCT-GTTCTCCATAGCCCGATTCTT 700
Query 691 TCTGGTTTAAGAGTTATGTATGCC-GTCAAGAAAACCTACTGGTTCGACATCTACAAGAA 749
|||||| ||||||| |||||| || || ||||| || |||||||||||||||| ||||||
Sbjct 701 TCTGGTCTAAGAGTAATGTAT-CCAGTGAAGAAGACATACTGGTTCGACATCTTCAAGAA 759
Query 750 TATCGACAAAATCCCGCATGTCGA-TTGCCCGGTTCTCATCATTCATGGAACTTCG-GAT 807
|||||||||||| || | ||| || ||||||||||||| ||||||| ||||||| | |||
Sbjct 760 TATCGACAAAATACCTCTTGT-GAATTGCCCGGTTCTCGTCATTCACGGAACTT-GTGAT 817
Query 808 GAAGTAGTGGATTGTTCTCATGGGAAACAACTATGGGAACTCTGC-AAAGACAAGTACGA 866
||||| || || ||||||||||| ||||||||||||||||||| | ||||| || || ||
Sbjct 818 GAAGTTGTTGACTGTTCTCATGGAAAACAACTATGGGAACTCT-CTAAAGAGAAATATGA 876
Query 867 GCCGCTCTGGGT-GAAAGGAGGGAACCACTGTGATCTTGAACACTACCCTGAATACATCA 925
||||| ||| | ||| || || |||||||||||||| |||||||| ||||||||||| |
Sbjct 877 ACCGCTTTGGCTCGAA-GGCGGTAACCACTGTGATCTAGAACACTATCCTGAATACATTA 935
Query 926 GACACCTTAAGAAATTCATCACGACAGTAGAGAGA 960
|||||||||||| |||||||| || |||||||||
Sbjct 936 AACACCTTAAGAAGTTCATCACAACCGTAGAGAGA 970
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64407299235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5