BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477351
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01640.1 | Symbols: ATGLCAK, GLCAK | glucuronokinase G | chr... 1917 0.0
AT5G14470.1 | Symbols: | GHMP kinase family protein | chr5:466... 915 0.0
> AT3G01640.1 | Symbols: ATGLCAK, GLCAK | glucuronokinase G | chr3:239381-241443
FORWARD LENGTH=1371
Length=1371
Score = 1917 bits (1038), Expect = 0.0
Identities = 1140/1191 (96%), Gaps = 0/1191 (0%)
Strand=Plus/Plus
Query 1 AAAGAAAGAAAGTAAAAAACGCGTCAGGGAAGAGAAGATGGATCCGAATTCCACGGTTTC 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAAAGAAAGTAAAAAACGCGTCAGGGAAGAGAAGATGGATCCGAATTCCACGGTTTC 60
Query 61 CGGCGAGGGCCAGGCTTTGGCGGCGATAGAGCATCGGTCCTTCGCTCGGATCGGATTCCT 120
|||||| || ||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 CGGCGATGGTCAGGCGACGGCGGCGATAGAGCATCGGTCCTTCGCTCGGATCGGATTTCT 120
Query 121 CGGAAATCCGAGCGATGTTTACTTCGGGCGTACAATATCATTGACCATCGGTAATTTCTG 180
|||||| ||||||||||| ||||||||||| || ||||||||||||||||| || |||||
Sbjct 121 CGGAAACCCGAGCGATGTATACTTCGGGCGAACCATATCATTGACCATCGGAAACTTCTG 180
Query 181 GGCCTCCGTGAAGCTGGAGCCGTCGCAGCATCTCGTAATCAAGCCGCATCCATTCCATGA 240
||| ||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||
Sbjct 181 GGCATCCGTGAAGCTGGAGCCATCGGAGCATCTCGTAATCAAGCCTCATCCATTCCATGA 240
Query 241 TCTCGTCCAGTTCACCTCTCTCGACCATCTCCTGCATCGTTTGCAAAATGAAGGTTACTA 300
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 241 TCTCGTCCAGTTCACCTCTCTCGACCATCTCCTGAATCGTTTGCAAAATGAAGGATACTA 300
Query 301 CGGTGGTGTAAGGTTGCTAATGGCGATATGTAAAGTGTTCCGTAACTACTGCAAAGACAA 360
|||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 301 CGGTGGGGTAAGGTTGCTAATGGCGATATGTAAAGTATTCCGTAACTATTGCAAAGAGAA 360
Query 361 TGACATTCAACTTCACCAAGGCAACTTCTCTCTTTCTTATGATACCAATATCCCTAGGCA 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGACATTCAACTTCACCAAGCCAACTTCTCTCTTTCTTATGATACCAATATCCCTAGGCA 420
Query 421 GACAGGGCTTTCGGGTTCTAGTGCCATCGTATCCGCTGCCCTTAACTGCCTTCTCGACTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GACAGGGCTTTCGGGTTCTAGTGCCATCGTATCCGCTGCCCTTAACTGCCTTCTCGACTT 480
Query 481 CTACAATGTCAGGCATTTGATCAAAGTACAAGTCCGCCCTAACATTGTTCTCAGTGCAGA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 481 CTACAATGTCAGGCATTTGATCAAAGTACAAGTCCGCCCTAACATTGTTCTCAGTGCTGA 540
Query 541 GAAAGAACTTGGTATTGTTGCTGGTCTTCAAGACAGGGTTGCTCAGGTCTATGGTGGTCT 600
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 541 GAAAGAACTTGGCATTGTTGCTGGTCTTCAGGACAGGGTTGCTCAGGTCTATGGTGGTCT 600
Query 601 TGTTCACATGGATTTTAGTAAGGAGCACATGGACAAATTGGGACATGGGATTTATACTCC 660
|||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |||||
Sbjct 601 TGTTCACATGGATTTTAGCAAGGAGCACATGGATAAATTGGGGCATGGGATTTACACTCC 660
Query 661 TATGGATATCAGTCTCCTCCCTCCTTTGCATCTCATCTATGCTGAGAATCCTAGCGACTC 720
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 661 TATGGATATCAGTCTCCTCCCTCCTCTGCATCTCATCTATGCTGAGAATCCGAGCGACTC 720
Query 721 AGGGAAGGTACATAGTATGGTTCGGCAAAGATGGTTAGACGGTGATGAGTTTATAATCTC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGGGAAGGTACATAGTATGGTTCGGCAAAGATGGTTAGACGGTGATGAGTTTATAATCTC 780
Query 781 ATCAATGAAAGAAGTTGGAAATATAGCAGAAGAAGGTCGCACTGCATTACTTAACAAGGA 840
||||||||||||||| |||| | |||||||||||||||| ||||||||||| ||||||||
Sbjct 781 ATCAATGAAAGAAGTCGGAAGTCTAGCAGAAGAAGGTCGAACTGCATTACTCAACAAGGA 840
Query 841 CCATTCCAAACTTGTGGAACTCATGAACCTTAATTTCGACATTCGGAGGCGGATGTTTGG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CCATTCCAAACTTGTGGAACTCATGAACCTTAATTTCGACATTCGGAGGCGGATGTTTGG 900
Query 901 GGATGAATGCTTAGGAGCAATGAACATAGAGATGGTGGAAGTAGCAAGGAGGGTTGGGGC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 901 GGATGAATGCTTAGGAGCAATGAACATAGAGATGGTGGAAGTAGCAAGGAGGGTTGGTGC 960
Query 961 AGCTTCAAAGTTCACTGGAAGTGGAGGAGCGGTGGTGGTTTTCTGCCCTGAAGGTCCGTC 1020
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 961 AGCCTCAAAGTTCACTGGAAGTGGAGGAGCAGTGGTGGTTTTCTGCCCTGAAGGTCCATC 1020
Query 1021 TCAGGTGAAGCTTCTGGAAGAAGAATGCCGGAAATCAGGATTTATGCTTCAGCCGGTAAA 1080
||||||||| |||||||||||||||||| ||||| | ||||||| |||||||||||||||
Sbjct 1021 TCAGGTGAAACTTCTGGAAGAAGAATGCAGGAAAGCGGGATTTACGCTTCAGCCGGTAAA 1080
Query 1081 AATCGCCCCTTCATGTTTGAATGATTCTGACATTCAGACCTTATGAAAGCCATGATCAAG 1140
||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1081 AATTGCGCCTTCATGTTTGAATGATTCTGACATTCAGACCTTATGAAAGCCTTGATCAAG 1140
Query 1141 TCTTGTTATTCACACGATAGAGCCATTTTCCAGAGAAATAAACATGTGAGC 1191
|||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TCTTCTTATTCACACGATAGAGCCATTTTCCAGAGAAATAAACATGTGAGC 1191
> AT5G14470.1 | Symbols: | GHMP kinase family protein | chr5:4662803-4664657
REVERSE LENGTH=1327
Length=1327
Score = 915 bits (495), Expect = 0.0
Identities = 842/1008 (84%), Gaps = 29/1008 (3%)
Strand=Plus/Plus
Query 89 GAGCATCGGTCCTTCGCTCGGATCGGATTCCTCGGAAATCCGAGCGATGTTTACTTCGGG 148
|||||||| || || ||| | ||||| || || ||||| || |||||||||||||||||
Sbjct 52 GAGCATCGCTCGTTTGCTAGAATCGGGTTTCTTGGAAACCCTAGCGATGTTTACTTCGGT 111
Query 149 CGTACAATATCATTGACCATCGGTAATTTCTGGGCCTCCG-TGAAGCTGGAGCCGTC-GC 206
||||| || ||||| ||||| |||||||||||||| | | | ||||| || || || |
Sbjct 112 CGTACGATTTCATTTACCATTGGTAATTTCTGGGCGTGGGCT-AAGCTCGAACCATCTG- 169
Query 207 AGCATCTCGTAATCAAGCCGCATCCATTCCATGATCTCGTCCAGTTC-ACCTCTCTCGAC 265
| |||||| | ||||| || ||||||||||||||||| ||||||||| | ||||||||
Sbjct 170 ATCATCTCTTGATCAAACCTCATCCATTCCATGATCTTGTCCAGTTCGA-TTCTCTCGAT 228
Query 266 CATCTCCTGCATCGTTTGCAAAATGAAGGTTACTACGGTGGTGTAAGGTTGCTAATGGCG 325
||||| | |||| ||| ||||||| || ||||| || ||||||||||| |||||||||
Sbjct 229 AATCTCGTTTATCGATTGGAAAATGATGGATACTATGGAGGTGTAAGGTTACTAATGGCG 288
Query 326 ATATGTAAAGTGTTCCGTAACTACTGCAAAGACAATGACATTCAACTTCA--CCAAGGCA 383
|| || ||||| ||||| ||||| |||||||| |||| || |||||||| ||| |
Sbjct 289 ATTTGCAAAGTATTCCGAAACTATTGCAAAGAAAATGGTATACAACTTCATGACAA--AA 346
Query 384 ACTTCTCTCTTTCTTATGATACCAATATCCCTAGGCAGACAGGGCTTTCGGGTTCTAGTG 443
||||| ||||||||||||||||||||||||| || ||||| |||||||| ||||||||||
Sbjct 347 ACTTCACTCTTTCTTATGATACCAATATCCCAAGACAGACGGGGCTTTCAGGTTCTAGTG 406
Query 444 CCATCGTATCCGCTGCCCTTAACTGCCTTCTCGACTTCTACAATGTCAGGCATTTGATCA 503
| || ||||| ||||| |||| |||||||||||||||||||||||||||||| | ||||
Sbjct 407 CAATTGTATCTGCTGCTCTTAGCTGCCTTCTCGACTTCTACAATGTCAGGCAATCAATCA 466
Query 504 -AAGTAC-AAGTCCGCCCTAACATTGTTCTCAGTGCAGAGAAAGAACTTGGTATTGTTGC 561
|| | | ||||||| |||||| || |||| | ||| |||||||||||||||||||||||
Sbjct 467 GAA-T-CGAAGTCCGACCTAACCTTATTCTTAATGCGGAGAAAGAACTTGGTATTGTTGC 524
Query 562 TGGTCTTCAAGACAGGGTTGCTCAGGTCTATGGTGGT---CTTGTTCACATGGATTTTAG 618
||||||||||||| | |||||||| |||||||||||| ||||||||||||||||||||
Sbjct 525 TGGTCTTCAAGACCGTGTTGCTCAAGTCTATGGTGGTGGTCTTGTTCACATGGATTTTAG 584
Query 619 TAAGGAGCACATGGACAAA-TTGGGACATGGGATTTATACTCCTA-TGGATATCAGTCTC 676
||| ||||| ||||| ||| |||| | ||||||| || ||| || ||||||||| |||
Sbjct 585 TAAAGAGCATATGGATAAAGTTGG-ATATGGGATATACACTA-TAATGGATATCAATCTT 642
Query 677 CTCCCTCCTTTGCATCTCATCTATGCTGAGAATCCTAGCGACTCAGGGAAGGTACATAGT 736
|| |||||| |||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 643 CTTCCTCCTCTGCATCTCATCTATGCTGAGAATCCTAGTGACTCTGGCAAGGTACATAGC 702
Query 737 ATGGTTCGGCA-AAGATGGTTAGACGGTGATGAGTTTATAATCTCATCAATGAAAGAAGT 795
| |||||| | ||| |||||||||||||||||||||||||| ||||||||| |||| |
Sbjct 703 ACGGTTCGT-AGAAGGTGGTTAGACGGTGATGAGTTTATAATATCATCAATGGCAGAAAT 761
Query 796 TGGAAATAT-AGCAGAAGAAGGTCGCACTGCATTACTTAACAAGGACCATTCCAAACTTG 854
|| ||| || ||| ||||||||||| |||||||| ||||| || || | ||||| ||
Sbjct 762 TGCAAA-ATTAGCTGAAGAAGGTCGAACTGCATTGCTTAAGAAAGATTACTCCAACCTCA 820
Query 855 TGGAACTCATGAACCTTAATTTCGA-CATTCGGAGGCGGATGTTTGGGGATGAATGCTTA 913
|||||||||||||| ||| ||||| | |||| ||| | |||||||| |||||||| ||
Sbjct 821 AGGAACTCATGAACCGTAACTTCGATC-TTCGAAGGAGTATGTTTGGAGATGAATGTTTG 879
Query 914 GGAGCAATGAACATAGAGATGGTGGAAGTAGCAAGGAGGGTTGGGGCAGCTTCAAAGTTC 973
||||| ||||||||||||||||||||||| ||| | | | | || |||||| ||||||||
Sbjct 880 GGAGCTATGAACATAGAGATGGTGGAAGTGGCACGTAAGATCGGCGCAGCTGCAAAGTTC 939
Query 974 ACTGGAAGTGGAGGAGCGGTGGTGGTTTTCTGCCCTGAAGGTCCGTCTCAGGTGAAGCTT 1033
|||||||| |||||||| |||||||||||||||||||| || || |||||||| || |||
Sbjct 940 ACTGGAAGCGGAGGAGCTGTGGTGGTTTTCTGCCCTGAGGGGCCATCTCAGGTCAAACTT 999
Query 1034 CTGGAAGAAGAATGCCGGAAATCAGGATTTAT-GCTTCAGCCGGTAAA 1080
|| ||||||||||| |||||||| |||||||| | || |||| |||||
Sbjct 1000 CTAGAAGAAGAATGTCGGAAATCTGGATTTATCG-TTGAGCCAGTAAA 1046
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58483634925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5