BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477352
Length=1783
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01630.1 | Symbols: | Major facilitator superfamily protein... 2577 0.0
> AT3G01630.1 | Symbols: | Major facilitator superfamily protein
| chr3:237239-239113 FORWARD LENGTH=1875
Length=1875
Score = 2577 bits (1395), Expect = 0.0
Identities = 1653/1772 (93%), Gaps = 39/1772 (2%)
Strand=Plus/Plus
Query 1 ACGACGGCGGAGGA-G--G-AACTAACCATGCGGAAACA---G-C--CG---CCACAGCC 47
|||||||||||||| | | ||| ||||||||||||||| | | || ||| ||||
Sbjct 5 ACGACGGCGGAGGAGGAAGAAAC-AACCATGCGGAAACAGCCGCCTTCGCCTCCAAAGCC 63
Query 48 ACCGCCTGTCAATTCTATGCTCCATTGGTGGCGGAGATGGACGGTGTTGGTGGCGGCTAT 107
||| | |||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 64 ACCACGTGTCAATTCTATGCTCCAATGGTGGCGGAGATGGACGGTGTTGGTGGCCGCTAT 123
Query 108 CTGGATTCAAGCATTCACCGGCACCAACTTCGATTTCTCTGCCTACTCTTCCGACATGAA 167
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 124 CTGGATTCAAGCATTCACCGGCACGAACTTCGATTTCTCTGCCTACTCTTCCGACATGAA 183
Query 168 GTCGTCCATGGGGGTTTCTCAGTCGCGGCTTAACTACATGGCGGTTGCTTCAGATTTGGG 227
||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 184 GTCTTCCATGGGGGTTTCTCAATCTCGGCTTAACTACATGGCGGTTGCTTCAGATTTGGG 243
Query 228 TAAAGCATTGGGTTGGTCTTCAGGTTTCGCCATTGCCTATTTCCCTGTTC-CCGGCGTGC 286
||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||
Sbjct 244 TAAAGCATTGGGTTGGTCTTCTGGTTTCGCCATTGCCTATTTCCCTG-TCTCCGGCGTGC 302
Query 287 TTTTCGCTGCCGCCGCAATGGGGCTCGTCGGTTACGGCGTCCAGTGGTTAGCCATCGCCG 346
|||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||
Sbjct 303 TTTTCGCTGCCGCCGCAATGGGACTCGTCGGTTACGGTGTCCAGTGGTTATCCATCGCCG 362
Query 347 ATGTGATCGATCTGCCTTACTCTCTGGTTTTGGTGTGCTGCTCCTTAGCCGGGTTAAGCA 406
||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 363 ATGTGATCGATCTACCTTACTCTCTGGTTCTGGTTTGCTGCTCCTTAGCCGGGTTAAGCA 422
Query 407 TCTGCTGGTTCAACACCGTCTGCTTCATCCTCTGCATTCGACATTTCGAAGCAAACCACT 466
|||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||
Sbjct 423 TCTGCTGGTTCAACACCGTCAGCTTCATCCTCTGCATTCGACATTTCAAAGCGAACCACT 482
Query 467 C-TCTCGCGTTGTCTCTCGTTGTGAGTTTCAACGGAATCAGTGCTGCGTTGTACACTCTT 525
| | | || |||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 483 CGT-TGGCCCTGTCTCTCGTTGTGAGTTTCAACGGAATCAGTGCCGCGTTGTACACGCTT 541
Query 526 GGCCATGAAACCATTAGTGGGAAATCATCGGCAAGCTCTGATATTTACCTTCTCCTTAAC 585
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GGCCATGAAGCCATTAGTGGGAAATCATCGGCAAGCTCTGATATTTACCTTCTCCTTAAC 601
Query 586 TCTCTCATCCCTCTGATCGTCTCTGTTTTAGCCCTTTGGCCTGTCCTTACTAACCCTAGT 645
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
Sbjct 602 TCTCTCATCCCTCTGATCGTCTCTGTTTTAGCCCTTTGGCCGGTTCTTACTAACCCTAAT 661
Query 646 TCCTCTGAATCCGATACTA-GACGAACCCATGACGAAACCCGAGTCTTTGTAGTTTTCAA 704
||||||||| ||||||||| | ||||| |||||||||||| || |||| ||||| |||||
Sbjct 662 TCCTCTGAAACCGATACTACG-CGAACGCATGACGAAACCAGAATCTTCGTAGTCTTCAA 720
Query 705 TGTCTTAGCCTTAGTCACATGCTTTTACCTTCTCTTGCCTTCCTCAGGCACCTACTTAGC 764
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGTCTTAGCCTTAGTTACATGCTTTTACCTTCTCTTGCCTTCCTCAGGCACCTACTTAGC 780
Query 765 TTCATCACCTCGTTGGCATTTCCTCGGAGCCATTTTCCTTCTCCTTTTCCCATTGTGCGT 824
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 781 CTCATCACCTCGTTGGCATTTCCTCGGAGCTATTTTCCTTCTCCTTTTCCCATTGTGCGT 840
Query 825 CCCGTTTCTCGACTATATTCACCGCGCTCTCGAGTCCTGTTTCCACCATCACAGCTCTGG 884
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 841 CCCGTTTCTCGACTATATTCACCGTGCTCTCGAGTCCTGTTTCCACCACCACAGCTCTGG 900
Query 885 CTATGCAGTGGTTAACATTGAGGAGCCCAAGATCCTCAAAA------GTCAAAAG-GTTA 937
|||||||| |||||||||||||||||||||||||||||||| |||| ||| || |
Sbjct 901 CTATGCAGCGGTTAACATTGAGGAGCCCAAGATCCTCAAAATCAAAAGTCAGAAGAGT-A 959
Query 938 ATGTGGAGGAGGAATGTAATACA-GTGAGACTCGGAGATGAACATTCTCTCGGAATGCTT 996
||| |||||||||| || || || |||||||| |||||||||||||||||||||||||||
Sbjct 960 ATGCGGAGGAGGAAAGTGAT-CAAGTGAGACTAGGAGATGAACATTCTCTCGGAATGCTT 1018
Query 997 GTTCGTAGGCTTGAGTTTTGGTTATACTATGTAGCTTATTTCTGCGGCGGCACGATCGGT 1056
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1019 GTTCGTAAGCTTGAGTTTTGGTTATACTACGTAGCTTATTTCTGCGGCGGCACGATCGGT 1078
Query 1057 CTTGTTTATAGCAACAACTTAGGACAGATCGCTCAGTCTCTAGGACAAAGCAGCTCGAAC 1116
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1079 CTTGTTTATAGCAACAACTTAGGACAGATCGCTCAGTCTCTAGGACAAAGCAGCTCAAAC 1138
Query 1117 GCTAAATCCTTAGTCACACTCTTCTCTGCCTTCTCCTTTCTCGGAAGATTGCTCTCCTCT 1176
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GCTAAATCCTTAGTTACACTCTTCTCTGCCTTCTCCTTTCTCGGAAGATTGCTCTCCTCT 1198
Query 1177 GCACCTGACTTCACACGCAAGAAACTAGACTACTTGACAAGAACAGGCTGGTTCACCATT 1236
||||||||||||||||||||||| ||| | |||||||||||||||||||||||||| |||
Sbjct 1199 GCACCTGACTTCACACGCAAGAAGCTAAAATACTTGACAAGAACAGGCTGGTTCACGATT 1258
Query 1237 TCGCTACTGCCAACACCTTTGGCCTTCTTCATCCTCGCGTATTCTCCCAAGACCAACCAG 1296
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1259 TCGCTACTGCCAACACCTTTGGCATTCTTCATCCTCGCGTATTCACCCAAGACCAACCAG 1318
Query 1297 ACGGCGCTATTAGAAGTTGCTACAGCACTTATCGGGTTAAGTTCGGGGTTTGTGTTTGCG 1356
|| |||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1319 ACCGCGCTACTAGAAGTTGCGACAGCACTTATCGGGTTAAGCTCGGGGTTTGTGTTTGCG 1378
Query 1357 GCTGCCGTTTCTATAACTTCAGACCTCTTTGGTCGCAACAGTGTGGGTGTCAACCAGAAC 1416
||||| ||||| |||||||| || |||||||| ||||||||||| |||||||||||||||
Sbjct 1379 GCTGCAGTTTCCATAACTTCCGAACTCTTTGGACGCAACAGTGTCGGTGTCAACCAGAAC 1438
Query 1417 ATCCTTATCACAAACATTCCCATCGGATCGCTCTTTTACGGCTACATGGCTGGGTCTGTC 1476
||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 1439 ATCCTCATCACAAACATTCCCATAGGATCTCTCTTCTACGGCTACATGGCTGGGTCTGTC 1498
Query 1477 TATGACACAAATGCCAGCCTCGGCAGGAAATCTGTTGTCTCTGACTCGGTTGTTTGCGTA 1536
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1499 TATGACACAAATGCCAGCCTCGGCAGGAAATCTGTGGTGGCTGACTCGGTTGTTTGCGTA 1558
Query 1537 GGAAGTAAGTGTTATTTCGTAACgtttttgttttggggttgtttgtctgttttggggttt 1596
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GGAAGAAAGTGTTATTTCGTAACGTTTTTGTTTTGGGGTTGTTTGTCTGTTTTGGGGTTT 1618
Query 1597 gtatgtagcgtgtttctgtttATTAGAACCAGAGCGGTTTATCACCGGTTAGAATTTTTG 1656
||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||| |
Sbjct 1619 GTATGTAGCTTGTTTCTGTTTATTAGAACCAGACCGGTTTATCACCGGTTAAAATT---G 1675
Query 1657 AACAGAATGTAAAGCTGTGTAGAGAGTGTTATCAGCTGCCT----ATAATGGTATAGATT 1712
||||||||||||| |||||||||| | ||||||||||||| |||||||||||||||
Sbjct 1676 AACAGAATGTAAAACTGTGTAGAG--TATTATCAGCTGCCTGCTTATAATGGTATAGATT 1733
Query 1713 GGTCGGATCCAAGAAAAGAGTAACCATTGCCT 1744
||| ||||||||||||||||| ||||||||||
Sbjct 1734 GGTAGGATCCAAGAAAAGAGTGACCATTGCCT 1765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88202357565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5