BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477353
Length=1474
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01620.1 | Symbols: | beta-1,4-N-acetylglucosaminyltransfer... 2141 0.0
> AT3G01620.1 | Symbols: | beta-1,4-N-acetylglucosaminyltransferase
family protein | chr3:235197-236925 REVERSE LENGTH=1493
Length=1493
Score = 2141 bits (1159), Expect = 0.0
Identities = 1390/1498 (93%), Gaps = 29/1498 (2%)
Strand=Plus/Plus
Query 1 AAACGGCTATAATTGGCGTTATAGTTACGGTGAGAGGAGAAGGATCGATTTGAAGACAGA 60
||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||||||||
Sbjct 1 AAACGGCTATAATTGGCGTTACAGTTTTGGTGAAAGGAGAAGGATCGATTTCAAGACAGA 60
Query 61 AATTCTCGGATTTGATCCTCCTCCGAGACCTAGA-C-CTC-Ctc-t-ttcttgtttttct 115
|||||||||||||||||||||||||||| ||||| | ||| ||| | || || |||||||
Sbjct 61 AATTCTCGGATTTGATCCTCCTCCGAGAACTAGACCACTCTCTCTTGTTTTTCTTTTTCT 120
Query 116 ttagattttctgtttcttcataattttttttttttttCCGTTCAATATTTGACTTTCCTT 175
|||||||||||||| |||| || || ||||||| ||| ||| |||||||||||||
Sbjct 121 GTAGATTTTCTGTTTATTCA-AA-AACTTATTTTTTT-CGTCCAAAATTTGACTTTCCTG 177
Query 176 TG----AA-C--CA--ATCATGTCCGATGGTTATTGTAATTCTAAGAAGACTGATACTAT 226
| || | || |||||||||||||||||| ||| |||||||||||| ||||||||
Sbjct 178 AGAACTAATCATCATCATCATGTCCGATGGTTATCGTAGTTCTAAGAAGACGGATACTAT 237
Query 227 CTGCGAACATGTTTGTGGACAGGAAGGTTCTCGAGCAGGCAAGGCCATGTCAAGGCTTAG 286
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 238 CTGCGAAGATGTTTGTGGACAGGAAGGTTCTCGAGCAGGCAAGGCCATTTCAAGGCTTAG 297
Query 287 ATGTGTTCTAAGAGGACTCGATTTTGAAACTTTTCTGTTTCTCTTCACTCTCCTCCCAGT 346
|||||||||||||||||||||||| |||| || |||||||||||||||||||| ||| |
Sbjct 298 ATGTGTTCTAAGAGGACTCGATTTCAAAACATTCCTGTTTCTCTTCACTCTCCTGCCACT 357
Query 347 CTTCATCTTCGGCATCTATCTACACGGCCAGAAGATTACATATTTCTTGAGACCTCTATG 406
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 358 CTTCATCTTCGGCATCTATCTACACGGCCAGAAGATCACATATTTCTTGAGACCTCTATG 417
Query 407 GGAATCACCTCCTAAACCTTTTAACATCCTTCCTCATTACTATCACGCCAACACTTCCAT 466
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 418 GGAATCACCTCCTAAACCTTTTAACATCCTTCCGCATTACTATCACGAGAACACTTCCAT 477
Query 467 GGAAATGCTCTGCAATCTTCATGGCTGGAAACTCCGTGAATCTCCAAGAAGAGTCTTTGA 526
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 478 GGAATTGCTCTGCAATCTTCATGGCTGGAAACTCCGCGAATCTCCAAGAAGAGTCTTTGA 537
Query 527 TGCTGTCTTGTTCAGTAACGAGATCGATATGCTCACTCTCCGTTGGAATGAGTTAAACCC 586
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 538 TGCTGCCTTGTTCAGTAACGAGATCGATATGCTCACTCTCCGTTGGAATGAGTTAAATCC 597
Query 587 CTACATTACTCAGTTTGTGCTTCTCGAATCTAACTCAACTTTCACCGGACTGTCAAAACC 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTACATTACTCAGTTTGTGCTTCTCGAATCTAACTCAACTTTCACCGGACTGTCAAAACA 657
Query 647 GTTGGCTTTCGCAGACAACCGGGAGAAGAATTTCCAATTTGCCGAGTCAAAACTGACTTA 706
||||||||||||||||||| |||||||||||||| |||| | ||| ||| ||||||||
Sbjct 658 GTTGGCTTTCGCAGACAACAGGGAGAAGAATTTCAAATTCGTTGAGCCAAGGCTGACTTA 717
Query 707 TGGGCACGTTGGAGGAAGGTTCAAGAAAGGCGAAAACCCCTTTGTGGAAGAATCATTCCA 766
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 718 TGGGAACGTTGGAGGAAGGTTCAAGAAAGGCGAAAACCCCTTTGTGGAGGAATCATTCCA 777
Query 767 AAGGCTTGCACTTGACCAACTGATCAAGCTCGCAGGTATAAAAGAAGATGATATTTTGAT 826
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 778 AAGGCTTGCACTTGACCAGTTGATCAAGCTCGCAGGTATAAAAGAAGATGATCTTTTGAT 837
Query 827 AATGTCGGATGTCGATGAGATCCCCAGCAGTCATACCATCAATCTGCTTAGATGGTGTGA 886
|||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct 838 AATGTCGGATGTCGATGAGATCCCGAGCGGCCATACCATCAATCTGCTTAGATGGTGTGA 897
Query 887 CGGATTCCCACCCATCCTTCATCTTCAGTTGAGAAACTACCTCTACTCATATGAGTACTA 946
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CGGGTTCCCACCGATCCTTCATCTTCAGTTGAGAAACTACCTCTACTCATATGAGTACTA 957
Query 947 TGTCGATAGCAAAAGCTGGAGAGCTTCGGTTCATCTCTACAAGCCTGGGAAAACTCGGTA 1006
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TGTCGATAGCAAAAGCTGGAGAGCTTCGGTTCATCTCTACAAGCCTGGGAAAACTCGGTG 1017
Query 1007 TGCTCATTTCCGGCAAAGCGACAATCTTTTGACAGATTCAGGTTGGCATTGCAGTTTTTG 1066
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1018 CGCTCATTTCCGGCAAAGCAACAATCTTTTGACAGATTCAGGTTGGCATTGCAGTTTCTG 1077
Query 1067 TTTCAGACACATCAATGATTTCGTATTCAAGATGAAAGCTTATAGCCATACCGACCGGGT 1126
|||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1078 TTTCAGACACATCAATGACTTCGTGTTCAAGATGAAAGCTTATAGCCATACTGACCGGGT 1137
Query 1127 CAGATTCTTACATTATCTGAACCCGAGACGAATCCAAGATGTTATCTGCAAAGGAACTGA 1186
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1138 TAGATTCTTACATTATCTGAACCCGAGACGAATCCAAGACATTATCTGCAAAGGAACTGA 1197
Query 1187 TCTTTTCGATATGCTTCCTGAAGAACACACATTCAGGGAGATTATCGGGAAACTTGGTCC 1246
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1198 TCTTTTCGATATGCTTCCTGAAGAACACACATTCAGGGAGATTATCGGCAAACTTGGTCC 1257
Query 1247 GATTCCACGGTCTTATTCAGCTGTTCATCTCCCTGGATACTTGATTCAGAATGCTAATAA 1306
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1258 GATTCCACGGTCTTATTCAGCTGTTCATCTCCCTGGATACTTGATTCAGAATGCTGATAG 1317
Query 1307 CTACAAGTACTTATTACCTGGGAACTGCAAACGAGAATTTGGCTGATAAATAAAGGACCT 1366
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1318 CTACAAGTACTTATTACCTGGGAACTGCAAACGAGAATCTGGCTGATAAATAAAGGACCT 1377
Query 1367 CTACTTATCACT---C---C--TCTA-TAGTCTTTAGCTTTT-GTTCTCTCTTTCTCTAT 1416
||||||| |||| | | |||| | ||||||||||||| |||||| ||||||||||
Sbjct 1378 CTACTTACCACTTATCAGTCCCTCTAGTTGTCTTTAGCTTTTTGTTCTCGCTTTCTCTAT 1437
Query 1417 ATCATCTCTGTGCATACAATTTTTACAGTCTCAGAATTTTTGTAGCATTACGGATCCG 1474
|||||||||| ||||||| || ||||| |||||||||||||||| |||||||||||
Sbjct 1438 CTCATCTCTGTACATACAACTT--ACAGTATCAGAATTTTTGTAGCGTTACGGATCCG 1493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72690389160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5