BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477358
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01570.1 | Symbols: | Oleosin family protein | chr3:221939-... 1151 0.0
> AT3G01570.1 | Symbols: | Oleosin family protein | chr3:221939-222827
REVERSE LENGTH=814
Length=814
Score = 1151 bits (623), Expect = 0.0
Identities = 735/787 (93%), Gaps = 15/787 (2%)
Strand=Plus/Plus
Query 3 ATTAAGCTTGAATTTGGAGGATCAATGGCCGACGTTCGCACACATTCTCACCAGCTTCAA 62
|||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 26 ATTAAGCTTGAACTTGGAGGATCAATGGCCGACGTTCGCACACACTCGCACCAGCTTCAA 85
Query 63 GTGCACCCTCAACGCCAGCATGAAGGAGGCATCAAAGTCCTTTATCCTCAGAGTGGCCCT 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 86 GTGCACCCTCAACGCCAGCATGAAGGAGGCATCAAAGTCCTTTATCCTCAGAGTGGCCCT 145
Query 123 TCTTCCACTCAGGTGCTAGCCGTGTTTGTCGGTGTACCGGTAGGAGGGACGCTGCTGACT 182
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 146 TCTTCCACTCAGGTGCTAGCCGTGTTTGTCGGTGTACCGATAGGAGGAACGCTGCTGACT 205
Query 183 ATAGCCGGTTTAACATTAGCCGGTTCGGTTATTGGACTAATGCTAGCATTCCCGTTGTTC 242
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 206 ATAGCCGGTTTGACATTAGCCGGTTCGGTTATAGGACTAATGCTAGCATTCCCGTTGTTT 265
Query 243 CTCATCTTCAGTCCGGTTATTGTACCAGCAGCCTTTGTGATCGGTCTAGCTATGACCGGA 302
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 266 CTCATCTTTAGTCCGGTTATTGTACCAGCAGCCTTTGTCATCGGTCTAGCTATGACTGGA 325
Query 303 TTCCTGGCGTCAGGGGCCATAGGTCTCACCGGACTATCATCCATGTCGTGGGTACTCAAC 362
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 TTCCTGGCTTCAGGGGCCATAGGTCTCACCGGACTATCATCCATGTCGTGGGTACTCAAC 385
Query 363 TACATCCGCCGGGCTGGAG-AGCATATTCCGGAGGAGCTTGAGGAAGCGAAGCAGCGTTT 421
|||||||||||||| || | ||||||| |||||||||||||||||||||||||| |||||
Sbjct 386 TACATCCGCCGGGCCGG-GCAGCATATCCCGGAGGAGCTTGAGGAAGCGAAGCATCGTTT 444
Query 422 GGCTGACATGGCTGAGTATGTGGGACAGAGGACTAAAGATGCTGGACAAACCATAGAAGA 481
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GGCTGACATGGCCGAGTATGTGGGACAGAGGACTAAAGATGCTGGACAAACCATAGAAGA 504
Query 482 CAAAGCTCACGATGTCCGAGAGACCAAGACTTTTGATGTCAGAGACCGAGACACCACCAA 541
||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 505 CAAAGCTCATGATGTCCGAGAGGCCAAGACTTTTGATGTCCGAGACCGAGACACCACCAA 564
Query 542 GGGTACTCATAATGTCCGAGACACCAAGACTACATAAAGCGTGTGTTCTGAGTTAACCAT 601
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 565 GGGTACTCATAATGTCCGAGACACCAAGACTACATAAAGCGTGTGTTTTGAGTGAACCAT 624
Query 602 GGTGAATAAAAAAGATCGACTGCTAGTTCTTGATGTTGGTGTGTTTTGAGTGTTTGTATT 661
| ||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 625 GTTGAATAAAAAAAATCGACTGTTAGTTCTTAATGTTCATGTGTTTTGAGTGTTTGTATT 684
Query 662 TGCTTGTAAGCTTCTTT-GAGTTTAGTTTCCt-tt-ttttttATG--TGTAACAATAATA 716
||||||||||||| ||| | |||||||||||| || |||||| | ||||||||||||
Sbjct 685 TGCTTGTAAGCTTATTTTGGGTTTAGTTTCCTCTTCTTTTTTTTTCCTGTAACAATAATG 744
Query 717 TCAGAGACTTTTTGCTTCTATAGTTGCGTCAGTTATTTATTTTATTGATGCGTAATAAAT 776
|| ||||| |||||||||||| | |||| ||| |||||||||||||||||| ||
Sbjct 745 TCGGAGACATTTTGCTTCTAT-----C---AGTTCTTTGTTTTATTGATGCGTAATAGAT 796
Query 777 TTGAAAT 783
|||||||
Sbjct 797 TTGAAAT 803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38077483426
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5