BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477359
Length=1816
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01560.1 | Symbols: | Protein of unknown function (DUF1421)... 1085 0.0
> AT3G01560.1 | Symbols: | Protein of unknown function (DUF1421)
| chr3:219582-221879 FORWARD LENGTH=2010
Length=2010
Score = 1085 bits (587), Expect = 0.0
Identities = 686/733 (94%), Gaps = 10/733 (1%)
Strand=Plus/Plus
Query 1088 CAGTCACCACCATCATCAGGCTACAACCCCGGGGAACAACAACCATACCCA-ATGCAGTC 1146
||| ||||||||||||||||||||||||||| ||||||| |||||| || ||||| ||
Sbjct 1284 CAGCCACCACCATCATCAGGCTACAACCCCGAAGAACAACCACCATA-TCAGATGCAATC 1342
Query 1147 TTACCCGCCAATCCCTCCTCATCAGCAGCCACCTGCTGGTTCTGCCCCTTCTCAGCACTT 1206
||||||||||| |||||||| ||| |||||||||||||||||| |||||||||| || ||
Sbjct 1343 TTACCCGCCAAACCCTCCTCGTCAACAGCCACCTGCTGGTTCTACCCCTTCTCAACAGTT 1402
Query 1207 CTACAACCCTCCTCAACCACAACCATCAATGTATGATGGAGCGGGTGGTAGATCTAATTC 1266
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1403 CTACAACCCTCCTCAACCACAACCATCAATGTACGATGGAGCGGGTGGTAGATCTAATTC 1462
Query 1267 AGGTTTTCCGTCCGGCTACTCGTCTGAACCTTACCCATACAGTGGTTCACCAATGTCATC 1326
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||
Sbjct 1463 AGGTTTTCCGTCCGGCTACTTGTCTGAACCTTACACATACAGTGGTTCACCAATGTCCTC 1522
Query 1327 AGCGAAACCGCCACATATAAGTAGCAGTGGAACTGGTTACCCACAGCTCTCAAATTCACG 1386
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1523 AGCGAAACCGCCACATATAAGTAGCAATGGAACTGGTTACCCACAGCTCTCAAATTCACG 1582
Query 1387 TCCATTGCCACACGCTTTGCCAATAATGGTTTCAGCCATCAGCAGCGGTGGTGGCTCTAG 1446
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1583 TCCATTGCCACACGCTTTGCC---AATGGTTTCAGCCGTCAGCAGCGGTGGTGGCTCTAG 1639
Query 1447 CTCCCCGAGATCAGAAAGCAGAGCCCCAATCGATGATGTGATCGACAGGGTGACAACCAT 1506
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1640 TTCCCCTAGATCAGAAAGCAGAGCCCCAATCGATGATGTAATCGACAGGGTGACAACCAT 1699
Query 1507 GGGATTCCCAAGGGACCAAGTCAGAGCAACAGTGAGAAAACTGACTGAAAACGGCCAAGC 1566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1700 GGGATTCCCAAGGGACCAAGTCAGAGCAACAGTGAGAAAACTGACTGAAAACGGCCAAGC 1759
Query 1567 TGTTGACCTCAACGTGGTTCTGGATAAGTTGATGAACGAAGGAGGAGCTCCACCAGGAGG 1626
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1760 TGTTGACCTCAACGTGGTTCTGGATAAGTTGATGAACGAAGGAGGAGCTCCACCTGGAGG 1819
Query 1627 TTGGTTTGATGGTCGGTAGCCATCGGCTTAGCTAACCCTGTACAGTACTTAATATCAGTT 1686
|| |||| ||||||||||||||||| ||||| ||| ||||||||||||| |||||||||
Sbjct 1820 TTTTTTTGGTGGTCGGTAGCCATCGGTTTAGCCAACTCTGTACAGTACTTTATATCAGTT 1879
Query 1687 ATCGAGTTTA-GGATCACCTTTGTGACCAAATATCGATTTCTTAGAGCTTGTAAGCCGTA 1745
||||| |||| |||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1880 ATCGA-TTTAAGGATCACCTTTGTGACCAAATATCGATTTCA-AGAGCTTGTAAGTTGTA 1937
Query 1746 ACCCATTGTGACTT--TATATGATTTCAGTTTGATGCGTAATTGTAGAGTATGTCTGTTA 1803
|||||||| ||||| |||||||| |||||||||||||||||| ||||| |||||| |||
Sbjct 1938 ACCCATTGCGACTTCATATATGATATCAGTTTGATGCGTAATTCTAGAGAATGTCTATTA 1997
Query 1804 CTCCTTTGTGTTT 1816
|||||||||||||
Sbjct 1998 CTCCTTTGTGTTT 2010
Score = 830 bits (449), Expect = 0.0
Identities = 812/969 (84%), Gaps = 98/969 (10%)
Strand=Plus/Plus
Query 155 TCGAGAGTCGGAGAAGATT-TC-GGTGGATCGATGAATAATTGTCAGTATATGGATAAGC 212
||| ||||||||||| ||| || |||||||||||||||| |||||||| ||||||| |
Sbjct 272 TCGGGAGTCGGAGAA-ATTGTCGGGTGGATCGATGAATACTTGTCAGTTTATGGAT-A-- 327
Query 213 AGCAGATAATGGATCTATCCTCTTCGTCATCTCCACCTTCCACTGATTTCATCGATCTGA 272
||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||
Sbjct 328 AGCAGATAATGGATCTATCTTCTTCTTCATCTCTACCTTCCACTGATTTCATCGATCTGA 387
Query 273 TGAACAATCAGGACG---ATGATCACCAGAAGAAGCAGGTGATCGGCGATGATGGATTGG 329
|||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 388 TGAACAATCATGACGGCGATGATCACCAGAAGAAGCAGGTGATCGGCGATAATGGATTGG 447
Query 330 ACTCTAAGAAAGAAGAGATCCTTCCTAGCTATGATTTCCATCCCATTCGTCCCACCACCG 389
||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 448 ACTCTAAGAAAGAAGTGATCGTTCCTAGCTATGATTTCCATCCCATACGTCCCACCACCG 507
Query 390 CCGCCACTCGATTGTCTCATTCGGCTTTAGATCTCGCCGGATCTACGACTACTTCTACGG 449
|||| || |||||||||| ||||||||||||||||||||||| ||||||| ||
Sbjct 508 CCGC-AC--GATTGTCTCACTCGGCTTTAGATCTCGCCGGATCCACGACTA-------GG 557
Query 450 CCGCTAGGGTTCATTGGTCCGCCTCTGATTTTAAACCCGTTTCCACT--T-CGGGT---- 502
| || |||||||||||||||||| |||||||||||||||| | || |
Sbjct 558 --GTTA------ATTGGTCCGCCTCTGATTATAAACCCGTTTCCACTACTTCGCCTAACA 609
Query 503 -T--TT--GGATCT----ATT-----GAACCTTCAAAGTTGGTTTCTGACAAGGGTCAGA 548
| || |||||| ||| |||||||| ||||||||| ||||||||||||| |
Sbjct 610 CTAATTTTGGATCTCTCGATTCTATTGAACCTTCCAAGTTGGTTCCTGACAAGGGTCAAA 669
Query 549 ATGTGTCTA-------T-TT-TGTCCGAGATTATTGATAGGACCATGAAGAAACATACCG 599
|||||| || | || ||||||||||||| |||||||| ||||||||||||||||
Sbjct 670 ATGTGTTTAACACGACTATTATGTCCGAGATTATAGATAGGACAATGAAGAAACATACCG 729
Query 600 ATACCTTGCTTCATGTGATGGAAGGTGTTAGTGCACGTCTATCACAGCTGGAGAGCAGGA 659
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| |
Sbjct 730 ATACCTTGCTTCATGTAATGGAAGGTGTTAGTGCACGTCTTTCACAGCTGGAGACCAGAA 789
Query 660 CCCACAATCTCGAGAACCTGGTCGATGATCTCAAAGTTTCTGTTGACAACAGTCTCGGCA 719
||||||| |||||||||||||| |||||||||||||||||||||||||| |||| |||||
Sbjct 790 CCCACAACCTCGAGAACCTGGTGGATGATCTCAAAGTTTCTGTTGACAATAGTCACGGCA 849
Query 720 GCTCTGATGGGAAAATCAGACAGCTTAAAAACATCCTTGTAGAGGTGCAGAGTGGTGTAC 779
|| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 850 GCACTGATGGGAAAATGAGACAGCTTAAAAATATCCTTGTAGAGGTGCAGAGTGGTGTGC 909
Query 780 AACTATTGAAGGATAAACAAGAAATTGTCGAAGCA-ACGCAT-CAG-GTATCCAAAGTAG 836
||||||||||||| |||||||| ||| ||||||| | || | || | ||| | |||
Sbjct 910 AACTATTGAAGGACAAACAAGAGATTCTCGAAGCTCA-GCTTTCAAAGCATC-AG-GTAT 966
Query 837 --A-CCAGCACACCAAAACACACTCTTTACACGTTCATCCCACTGCTCAATCGCCTGCAC 893
| |||||| ||||||||||||||||||||||| ||||||||||||||||||| || |
Sbjct 967 CCAACCAGCATGCCAAAACACACTCTTTACACGTTGATCCCACTGCTCAATCGCCCGCTC 1026
Query 894 CAGTCCCTCTGCATTTACAAATGCCTCAGTTTCCTATTACTTCTTTCCCACACCCACCAT 953
|||||||| |||| || |||||||| |||||||||||||||| |||||||
Sbjct 1027 CAGTCCCTATGCA---------GC---AGTTTCCTCTTACTTCTTTCCCACAGCCACCAT 1074
Query 954 CTTCCGCTGCTGCTCCTTCCCAGCCGCCTTCCTCGCAACTACC---T-A-C--CC-AT-- 1003
||||| ||||||||||||||||||| ||||||||||||||||| | | | || |
Sbjct 1075 CTTCCACTGCTGCTCCTTCCCAGCCACCTTCCTCGCAACTACCACCTCAGCTACCTACGC 1134
Query 1004 --TTTTCTCCTCAACAAGAGCCGTATT-TCCCTCCACCTC--C-TCCA-AACCAGCCTCC 1056
|||||| |||||||||||||||||| ||| ||| ||| | ||| ||||| |||||
Sbjct 1135 AGTTTTCTTCTCAACAAGAGCCGTATTGTCC-TCCGCCTAGTCATCCTCAACCA-CCTCC 1192
Query 1057 -TCAAACCC 1064
||||||||
Sbjct 1193 ATCAAACCC 1201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89858975550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5