BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477360
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01550.1 | Symbols: ATPPT2, PPT2 | phosphoenolpyruvate (pep)... 1964 0.0
> AT3G01550.1 | Symbols: ATPPT2, PPT2 | phosphoenolpyruvate (pep)/phosphate
translocator 2 | chr3:216807-219054 REVERSE LENGTH=1490
Length=1490
Score = 1964 bits (1063), Expect = 0.0
Identities = 1277/1376 (93%), Gaps = 32/1376 (2%)
Strand=Plus/Plus
Query 1 AAAAACAAAACAAACTTTTTTCTTCTTACATGAAAATGGGGAGACAGAGAAGTTCCATTC 60
||||||||||||||||||||||||||||||||||||| ||| ||| | | | ||
Sbjct 21 AAAAACAAAACAAACTTTTTTCTTCTTACATGAAAAT---GAG---GAG--G-TAGACTC 71
Query 61 ATGTAACATAACTCTTACCAATAGAGGAAAGAAAAATAAAAGTTAGCAAGTGTCGGTTAC 120
||||||||||||||||||||||||||| ||| || | ||||||||||||| |||||||||
Sbjct 72 ATGTAACATAACTCTTACCAATAGAGG-AAG-AAGA-AAAAGTTAGCAAGAGTCGGTTAC 128
Query 121 TTGT--GAAATTCCAACAAATGCCAGAGGATTTATGCACATCCTGGAGCATCTGATCACC 178
|||| |||||||||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct 129 TTGTGAGAAATTCCAACAAATGCCGGAGGATTTATGCACATCTTGGAGCATCTGAT-A-A 186
Query 179 GAAG-AAAAATTATGTTTGCTCTTACATTTATAACTCCAAATCCAAGACTTCCATCTTCA 237
|| | |||||||||||| ||||| |||||| ||| |||||||||||||||||||||| ||
Sbjct 187 GAGGAAAAAATTATGTTCGCTCTCACATTTCTAAATCCAAATCCAAGACTTCCATCTCCA 246
Query 238 TTGTTCGTTGCCAAGTCTATTCCCGAATCAGCGTTGAGCAGAAGAAGCATAGCTTTTTCA 297
|||||| |||||||||||| ||| ||||||||||||||||||||||||| ||||||||||
Sbjct 247 TTGTTCCTTGCCAAGTCTACTCCTGAATCAGCGTTGAGCAGAAGAAGCAGAGCTTTTTCA 306
Query 298 TC-T-T-A-TC--A---TTGGAGACCGAACCTTAGATTTAATGGCTTCAAGCTCAAGTCA 348
|| | | | || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 TCTTCTAACTCTTATCCTTGGAGACCGAACCTTAGATTTAATGGCTTCAAGCTCAAGTCA 366
Query 349 GCTACAGTTCCGGAGAATGTTGAAGGAGGAGATTCAGAATCTGGAAGTTTGGTCAAAGGG 408
|||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||
Sbjct 367 GCTACAGTTCCGGAGAATGTGGAAGGAGGAGATTTGGAATCTGGAAGTTTGGTTAAAGGG 426
Query 409 TTAAAGTTAGGAGGCATGTTTGGAGTTTGGTACCTTCTCAATATCTACTACAACATCTTC 468
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 427 TTGAAGCTAGGAGGCATGTTTGGAGTTTGGTACCTTCTCAATATCTACTACAACATTTTC 486
Query 469 AACAAACAGGTACTTAGGGTTTATCCATATCCAGCGACTGTAACAGCATTTCAATTAGGG 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 AACAAACAGGTACTTAGGGTTTATCCATATCCAGCGACTGTAACAGCATTTCAATTAGGG 546
Query 529 TGTGGAACGTCGATGATTGCAATAATGTGGCTCTTTAAACTCCATCCACGCCCCAAATTT 588
|||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 547 TGTGGAACGTTGATGATTGCTATAATGTGGCTCCTTAAACTCCATCCACGCCCCAAATTT 606
Query 589 GCTCCTTCTCAGTTTACGGCGATCGTACAACTAGCAGCAGCTCACACGTTAGGTAACTTG 648
|||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||
Sbjct 607 TCTCCTTCTCAGTTTACGGTGATCGTACAACTAGCAGTAGCTCACACGTTAGGGAACTTG 666
Query 649 TTGACAAACGTGAGCTTGGGAAGAGTAAATGTCTCTTTCACCCACACAATCAAAGCAATG 708
|| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 667 TTAACAAATGTGAGCTTAGGAAGAGTAAATGTCTCTTTCACCCACACTATCAAAGCAATG 726
Query 709 GAGCCTTTCTTCACCGTCTTG-TTATCTGTTCTCTTGCTCGGTGAGTGGCCGAGTCTGTG 767
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 727 GAGCCTTTCTTCACCGTCTTGCTT-TCTGTTCTCTTGCTCGGTGAGTGGCCGAGTCTGTG 785
Query 768 GATTGTTTGTTCGTTGTTGCCAATCGTCGCTGGAGTCTCTTTAGCATCATTCACAGAAGC 827
|||||||||||||||||| || || ||||||||||||||||||||||| |||||||||||
Sbjct 786 GATTGTTTGTTCGTTGTTACCTATTGTCGCTGGAGTCTCTTTAGCATCTTTCACAGAAGC 845
Query 828 TTCTTTCAATTGGATTGGTTTCTGCAGTGCAATGGCATCTAATGTAACGAACCAATCACG 887
|||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 846 TTCTTTCAATTGGATTGGTTTCTGCAGTGCAATGGCTTCTAATGTGACGAATCAATCACG 905
Query 888 CAATGTTCTCAGTAAAAAATTCATGGTTGGAAAGGAAGCTATGGACAACATCAACCTTTT 947
|||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 906 CAATGTCCTCAGTAAAAAATTCATGGTTGGAAAGGACGCTTTGGACAACATCAACCTTTT 965
Query 948 CTCTGTAATAACAATTATCTCCTTTATCTTACTGGTTCCTGTAGCAGTCCTCATCGATGG 1007
|||| ||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 966 CTCTATAATAACCATTATCTCCTTTATCTTACTGGTTCCTTTAGCAATCCTCATCGATGG 1025
Query 1008 GTTTAAGCTTACTCCTTCGGACTTACAAATAGCAACAAGCCAGGGTTTGTCGGTAAAAGA 1067
||| ||| ||||||||||| | |||||| |||||||||||||||||||||||||||||||
Sbjct 1026 GTTCAAGGTTACTCCTTCGCATTTACAAGTAGCAACAAGCCAGGGTTTGTCGGTAAAAGA 1085
Query 1068 GTTTTGCATCATGTCTCTACTTGCTGGTGTTTGCTTGCATAGCTACCAACAGGTATCGTA 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 GTTTTGCATCATGTCTCTACTTGCTGGTGTTTGCTTGCATAGCTACCAACAGGTATCGTA 1145
Query 1128 TATGATATTGGAGATGGTGTCTCCAGTAACACACTCTGTAGGGAACTGCGTGAAGCGTGT 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 TATGATATTGGAGATGGTGTCTCCAGTAACACACTCTGTAGGGAACTGCGTGAAGCGTGT 1205
Query 1188 TGTGGTTATTACATCATCCATTATTTTCTTCAAAACCCCAGTCTCACTTCTTAACTCTAT 1247
||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||
Sbjct 1206 GGTGGTTATTACATCATCCATTCTTTTCTTCAAAACTCCAGTCTCACCTCTTAACTCTAT 1265
Query 1248 AGGTACCGCAACTGCACTAGCTGGAGTTTATTTGTACAGCAGAGCCAAAAGAGTCAAAGT 1307
||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct 1266 AGGTACCGCGACTGCACTAGCTGGAGTATATTTGTACAGCAGAGCCAAACGAGTCCAAGT 1325
Query 1308 CAAACAAAACCCAAAAACGTCTTGAATTATTATGTACATAGAAGCTCTTAAGTTTA 1363
||||| ||| ||||||| |||||||||| || ||| ||||||||||||| |||||
Sbjct 1326 CAAACCAAATCCAAAAATGTCTTGAATT-TT--GTATATAGAAGCTCTTA-GTTTA 1377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68573944470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5