BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477362
Length=2271
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |... 2998 0.0
AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein ... 1177 0.0
> AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1
| chr3:212751-216671 REVERSE LENGTH=2395
Length=2395
Score = 2998 bits (1623), Expect = 0.0
Identities = 1903/2031 (94%), Gaps = 48/2031 (2%)
Strand=Plus/Plus
Query 70 AAAGCTCGAGTTCAGAGGATTTGACCCGAGACTTTAATCTAATCTGCT-TTTCGTTTTCC 128
|||||||||||||| | ||||||||||||| |||||||| |||||||| ||||||||||
Sbjct 107 AAAGCTCGAGTTCACA-GATTTGACCCGAGTCTTTAATCCAATCTGCTGGTTCGTTTTCC 165
Query 129 ACATTC-AGGTACG-CGTC-T-ATTATC---TGCAGAAGTCTTTATTTGCTATGGCTGCT 181
|||||| | | || | || | | |||| | |||||||| |||||||||||||||
Sbjct 166 ACATTCAAACT-CGAC-TCTTGAATATCAAAT-CAGAAGTC----TTTGCTATGGCTGCT 218
Query 182 ACCGCCGCTGCTCCTTCTGTTGTCCGTTATGCACCTGAGGATCATTCTCTTCCCAAGCCC 241
| |||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 219 A---CCGCTGCTGCTTCTGTTGTCCGTTACGCACCTGAGGATCATACTCTTCCCAAGCCC 275
Query 242 TGGAAAGGCCTTGTCGATGATAGAACTGGTTACTTGTACTTTTGGAATCCTGAGACCAAT 301
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 TGGAAAGGCCTTATCGATGATAGAACTGGTTACTTGTACTTTTGGAATCCTGAGACCAAT 335
Query 302 GTTACTCAGTACGAGAAACCTA-CCGCTGCTC-AGCCTCCCAAG--TT-TCCCGCCGTTT 356
|||||||||||||||||||| | || || ||| | ||||| ||| || |||||||||||
Sbjct 336 GTTACTCAGTACGAGAAACCAACCCCCT-CTCTA-CCTCCTAAGTTTTCTCCCGCCGTTT 393
Query 357 CTCTTAGCTCTTCCGTTCAGGTTCAACAAACTGATGCCTATGCTCCTGCCAAGGATGACA 416
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 394 CTGTTAGCTCTTCCGTTCAGGTTCAACAAACTGATGCCTATGCTCCTCCCAAGGATGACG 453
Query 417 ATAAGTACCCCAGAGGCACTGAACATGGGCCTAAGATTGAGTCTGCCTCGAGGTTCACCG 476
|||||||| |||||||| |||||| | | | | | | | | ||||| | |
Sbjct 454 ATAAGTACTCCAGAGGCTCTGAAC----G--T--G--T--G--T--C-C-AGGTTTTCTG 495
Query 477 AGGGTGGCAGAAGTGGACCGCCATATTCAAACGGTGCTGCTAATGGAGTTGGGAATTCTG 536
|||||||||| ||||||||||| ||||| |||||||||||||||||||||||| ||||||
Sbjct 496 AGGGTGGCAGGAGTGGACCGCCTTATTCGAACGGTGCTGCTAATGGAGTTGGGGATTCTG 555
Query 537 CTTATGGTCCAGCATCTGCCAGAGGTCCTCCTCGC-TCATCAGCTCCAGGAAATGAACTG 595
|||||||| |||||||| |||||| ||||| || | ||||||||||||| || ||||||
Sbjct 556 CTTATGGTGCAGCATCTACCAGAGTTCCTCTTC-CTTCATCAGCTCCAGCAAGTGAACTA 614
Query 596 TCCCCTGAGGCCTATTCCCGCCGTCATGAAATTACTGTCAGTGGGGGCCAAGTACCACCA 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 TCCCCTGAGGCCTATTCCCGCCGTCATGAAATTACTGTCAGTGGGGGCCAAGTACCACCA 674
Query 656 CCTCTAATGTCCTTTGAAGCTACTGGTTTTCCTTCTGAGCTTCTGCGGGAGGTACTCAAT 715
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 675 CCTCTAATGTCCTTTGAAGCTACTGGTTTTCCACCTGAGCTTCTGCGGGAGGTACTCAGT 734
Query 716 GCAGGTTTCTCTGCTCCTACTCCGATTCAAGCTCAGTCATGGCCAATTGCGATGCAAGGG 775
||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 735 GCAGGTTTCTCTGCTCCAACTCCAATTCAAGCTCAGTCATGGCCCATTGCTATGCAAGGT 794
Query 776 AGGGACATAGTTGCCATTGCTAAAACTGGCTCGGGAAAAACTTTGGGTTACTTGATTCCT 835
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 AGGGACATAGTAGCCATTGCTAAAACTGGCTCGGGAAAAACTTTGGGTTACTTGATTCCT 854
Query 836 GGATTTCTGCATCTTCAACGCATCCGAAATGATTCGCGAATGGGCCCAACAATCTTGGTA 895
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 855 GGATTTTTGCATCTTCAACGTATCCGAAATGATTCGCGAATGGGCCCAACAATCTTGGTA 914
Query 896 TTGTCTCCAACGAGGGAGCTGGCCACACAAATCCAAGAAGAAGCTGTTAAATTTGGGAGG 955
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 TTGTCTCCAACGAGAGAGCTGGCCACACAAATCCAAGAAGAAGCTGTTAAATTTGGGAGG 974
Query 956 TCATCAAGAATTTCGTGCACGTGTTTGTATGGTGGTGCACCAAAGGGCCCTCAGCTGAGG 1015
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 975 TCATCAAGAATTTCGTGTACGTGTTTGTATGGTGGTGCACCAAAGGGCCCTCAGTTGAGG 1034
Query 1016 GATTTAGAAAGAGGAGCAGATATCGTGGTTGCAACTCCTGGGCGATTGAATGATATCCTT 1075
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1035 GATTTAGAAAGAGGAGCAGATATCGTGGTTGCAACTCCTGGGAGATTGAATGATATCCTT 1094
Query 1076 GAAATGAGGAGGATAAGTCTGCGTCAAATATCTTATCTTGTGCTAGATGAGGCAGATCGA 1135
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1095 GAAATGAGGAGGATTAGTCTGCGTCAGATATCTTATCTTGTGCTAGATGAGGCAGATAGA 1154
Query 1136 ATGTTGGACATGGGTTTTGAACCACAGATAAGGAAGATTGTGAAAGAAATTCCCACGAAG 1195
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1155 ATGTTGGACATGGGTTTTGAACCTCAGATAAGGAAGATTGTGAAAGAAATTCCCACTAAG 1214
Query 1196 CGTCAAACCCTTATGTACACAGCTACATGGCCAAAGGGAGTTAGGAAAATTGCAGCTGAC 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 CGTCAAACCCTTATGTACACAGCTACATGGCCAAAGGGAGTTAGGAAAATTGCAGCTGAC 1274
Query 1256 TTACTTGTTAACCCTGCTCAAGTCAACATTGGGAATGTTGACGAGCTTGTGGCTAACAAG 1315
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1275 TTGCTTGTTAACCCTGCTCAAGTCAACATTGGCAATGTTGACGAGCTTGTGGCTAACAAG 1334
Query 1316 TCAATAACACAGCATATTGAAGTGGTAGCACCAATGGAGAAACAGAGGAGGTTAGAGCAG 1375
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 TCAATCACACAGCATATTGAAGTGGTAGCACCAATGGAGAAACAGAGGAGGTTAGAGCAG 1394
Query 1376 ATCTTGCGGTCTCAGGAACCAGGCTCGAAGGTGATAATATTCTGCTCAACCAAAAGGATG 1435
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1395 ATCTTGCGGTCTCAGGAACCAGGCTCAAAGGTGATAATATTCTGCTCAACCAAAAGGATG 1454
Query 1436 TGTGATCAACTAACCCGCAATCTAACCCGCCAATTTGGAGCTGCTGCTATACATGGGGAC 1495
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1455 TGTGATCAACTAACACGCAATCTAACCCGCCAATTTGGAGCTGCTGCTATACATGGAGAC 1514
Query 1496 AAGTCACAGCCTGAGAGAGACAATGTTCTTAATCAATTCCGCAGTGGCAGGACTCCGGTT 1555
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1515 AAGTCCCAGCCTGAGAGAGACAATGTTCTTAATCAATTCCGCAGTGGCAGAACTCCGGTT 1574
Query 1556 CTTGTAGCAACTGATGTTGCTGCTCGTGGGCTGGATGTTAAGGACATCAGGGCTGTCGTA 1615
||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 1575 CTTGTAGCAACCGATGTTGCTGCTCGTGGTCTGGACGTTAAGGACATCAGGGCGGTCGTA 1634
Query 1616 AATTATGATTTCCCCAATGGAGTGGAAGACTATGTTCATAGAATAGGAAGAACAGGAAGA 1675
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1635 AACTATGATTTCCCCAATGGAGTGGAAGACTATGTTCATAGAATCGGAAGAACAGGAAGA 1694
Query 1676 GCTGGAGCGACTGGTCAGGCATTCACATTCTTTGGTGATCAAGATTCGAAGCATGCTTCG 1735
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1695 GCTGGAGCGACTGGTCAGGCATTCACATTCTTTGGTGATCAAGATTCGAAACATGCTTCG 1754
Query 1736 GATCTGATCAAGATTTTGGAAGGAGCAAACCAGCGAGTTCCTCCTCAGATCCGCGAAATG 1795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1755 GATCTGATCAAGATTTTGGAAGGAGCAAACCAGCGAGTTCCTCCTCAGATCCGCGAAATG 1814
Query 1796 GCTACCCGTGGTGGTGGTGGAATGAACAAATTCAGTCGTTGGGGTCCTCCTTCCGGAGGC 1855
||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1815 GCTACACGTGGTGGTGGGGGAATGAACAAATTCAGTCGTTGGGGACCTCCTTCCGGCGGC 1874
Query 1856 CGTGGTCGTGGTGGCGACTCTGGTTATGGTGGCAGAGGTAGCTTTGTTTCGCGTGACAGT 1915
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1875 CGTGGTCGTGGTGGCGACTCTGGTTATGGTGGCAGAGGTAGCTTTGCTTCCCGTGACAGT 1934
Query 1916 AGAAGCAGTAATGGATGGGGAAGAGAGCGTGAAAGAAGCCGTAGCCCCGAGAGATTTAAC 1975
|||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||| |||
Sbjct 1935 AGAAGCAGCAATGGATGGGGAAGAGAGCGAGAAAGGAGCCGTAGCCCTGAGAGATTCAAC 1994
Query 1976 AGAGCTCCACCACCGTCTTCCACCGGATCTCCTCCTCGCAGCTTCCACGAGACGATGATG 2035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1995 AGAGCTCCACCACCGTCTTCCACCGGATCTCCTCCTCGCAGCTTCCACGAGACGATGATG 2054
Query 2036 ATGAAACACAGATGAAAAGAGAGACACAAAGCT--GATAAAGCCAAGTGAC 2084
|||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 2055 ATGAAACACAGATGAAAAGAGAGATACAAAGCTCTGATAAAGCCAAGTGAC 2105
> AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein
| chr5:4710563-4715069 FORWARD LENGTH=2670
Length=2670
Score = 1177 bits (637), Expect = 0.0
Identities = 991/1161 (85%), Gaps = 27/1161 (2%)
Strand=Plus/Plus
Query 703 GGA-GGTACT-CAATGCAGGTTTCTCTGCTCCTA-CTCCGATTCAAGCTCAGTCATGGCC 759
||| |||| | || |||||| ||||| ||||| | |||| ||||||||||||||||||||
Sbjct 900 GGATGGTA-TACAGTGCAGGATTCTCAGCTCC-ATCTCCAATTCAAGCTCAGTCATGGCC 957
Query 760 AATTGCGATGCAAGGGAGGGACATAGTTGCCATTGCTAAAACTGGCTCGGGAAAAACTTT 819
||||||||||||| || |||||||| |||||||||||||| |||||||||||||||||
Sbjct 958 AATTGCGATGCAAAACAGAGACATAGTAGCCATTGCTAAAACAGGCTCGGGAAAAACTTT 1017
Query 820 GGGTTACTTGATTCCTGGATTTC-TGCATCTTCAACGCATCCGA-AATGATTCGCGAATG 877
|||||||||||||||||| |||| ||||||| ||||| |||| | |||||||| ||||||
Sbjct 1018 GGGTTACTTGATTCCTGG-TTTCATGCATCTCCAACGGATCC-ACAATGATTCACGAATG 1075
Query 878 GGCCCAACAATCTTGGTATTGTCTCCAACGAGGGAGCTGGCCACACAAATCCAAGAAGAA 937
|||||||| |||||||| ||||| || || |||||| |||||||||||||||||| |||
Sbjct 1076 GGCCCAACGATCTTGGTCTTGTCCCCTACTAGGGAGTTGGCCACACAAATCCAAGTTGAA 1135
Query 938 GCTGTTAAATTTGGGAGGTCATC-AAGAATTTCGTGCACGTGTTTGTATGGTGGTGCACC 996
||| | |||||||| | |||||| || ||||||||| |||||||||||||||| |||||
Sbjct 1136 GCTCTGAAATTTGGCAAGTCATCTAA-AATTTCGTGTGCGTGTTTGTATGGTGGAGCACC 1194
Query 997 AAAGGGCCCTCAGCTGAGGGATTTAGAAAGAGGAGCAGATATCGTGGTTGCAACTCCTGG 1056
||||| |||||||||| ||| |||||||||| | |||||| || ||||||||||| ||
Sbjct 1195 CAAGGGTCCTCAGCTGAAGGAAATAGAAAGAGGTGTAGATATTGTTGTTGCAACTCCCGG 1254
Query 1057 GCGATTGAATGATATCCTTGAAATGAGGAGGATAAGTCTGCGTCAAATATCTTATCTTGT 1116
|||| ||||||||||||||||||||| ||| || ||||||| |||| ||||||| |||||
Sbjct 1255 GCGACTGAATGATATCCTTGAAATGAAGAGAATCAGTCTGCATCAAGTATCTTACCTTGT 1314
Query 1117 GCTAGATGAGGCAGATCGAATGTTGGACATGGGTTTTGAACCACAGATAAGGAAGATTGT 1176
||| || ||||||||| ||||| |||||||||| || ||||| ||||| || || |||||
Sbjct 1315 GCTGGACGAGGCAGATAGAATGCTGGACATGGGGTTCGAACCTCAGATCAGAAAAATTGT 1374
Query 1177 GAAAGAAATTCCCACGAAGCGTCAAACCCTTATGTACACAGCTACATGGCCAAAGGGAGT 1236
||| || ||||||| |||||||||||||| |||||||| || ||||||||||||| ||
Sbjct 1375 GAATGAGGTTCCCACTAAGCGTCAAACCCTCATGTACACTGCAACATGGCCAAAGG-AGG 1433
Query 1237 T-AGGAAAATTGCAGCTGA-CTTACTTGTTAACCCTGCTCAAGTCAACATTGGGAATGTT 1294
| |||||||| |||||||| ||| |||||||||||||| || ||||| ||||| ||||||
Sbjct 1434 TGAGGAAAATCGCAGCTGATCTT-CTTGTTAACCCTGCCCAGGTCAATATTGGTAATGTT 1492
Query 1295 GACGAGCTTGTGGCTAACAAGTCAATAACACAG-CATATTGAAGTGGTAGCACCAATGGA 1353
|| ||||||||||| |||||||| || || ||| | ||||||||| ||||||| |||||
Sbjct 1493 GATGAGCTTGTGGCGAACAAGTCCATTACTCAGAC-TATTGAAGTCTTAGCACCGATGGA 1551
Query 1354 GAAACAGAGGAGGTTAGAGCAGATCTTGCGGTCTCAGGAACCAGGCTCGAAGGTGATAAT 1413
|||||| || |||||||||||||| ||||| ||||||||||| || || ||| | |||||
Sbjct 1552 GAAACATAGTAGGTTAGAGCAGATATTGCGCTCTCAGGAACCGGGTTCCAAGATTATAAT 1611
Query 1414 ATTCTGCTCAACCAAAAGGATGTGTGATCAACTAACCCGCAATCTAACCCGC-CAATTTG 1472
||||| |||||||||||||||||||||||||| | | || || ||||| | ||||
Sbjct 1612 TTTCTGTTCAACCAAAAGGATGTGTGATCAACTGGCAAGGAACCTGACCCGTACG-TTTG 1670
Query 1473 GAGCTGCTGCTATACATGGGGACAAGTCACAGCCTGAGAGAGACAATGTTCTTAATCAAT 1532
||||||||||||||||||| |||||||| ||| ||||||||||| | || || |||||||
Sbjct 1671 GAGCTGCTGCTATACATGGAGACAAGTCGCAGGCTGAGAGAGACGACGTACTGAATCAAT 1730
Query 1533 TCCGCAGTGGCAGGACTCCGGTTCTTGTAGCAACTGATGTTGCTGCTCGTGGGCTGGATG 1592
| | ||||| |||||||| |||||||| ||||||||||| ||||||||||| || || |
Sbjct 1731 TTAGAAGTGGTAGGACTCCTGTTCTTGTTGCAACTGATGTAGCTGCTCGTGGACTTGACG 1790
Query 1593 TTAAGGACATCAGGGCTG-TCGTAAATTATGATTTCCCCAATGGAGTGGAAGACTATGTT 1651
|||||||||| |||| || | || || |||||||| || |||||||| || || |||||
Sbjct 1791 TTAAGGACATAAGGG-TGGTGGTCAACTATGATTTTCCAAATGGAGTAGAGGATTATGTC 1849
Query 1652 CATAGAATAGGAAGAACAGGAAGAGCTGGAGCGACTGGTC-AGGCATT-CACATTCTTTG 1709
|||||||| |||||||| |||||||||||||| || |||| || | || ||| |||||||
Sbjct 1850 CATAGAATTGGAAGAACTGGAAGAGCTGGAGCAACCGGTCTAG-C-TTACACCTTCTTTG 1907
Query 1710 GTGATCAAGATTCGAAGCATGCTTCGGATCTGATCAAGATTTTGGAAGGAGCAAACCAGC 1769
| || |||||| | || |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1908 GAGACCAAGATGCAAAACATGCTTCAGATCTGATCAAGATCTTGGAAGGAGCAAACCAGA 1967
Query 1770 GAGTTCCTCCTCAGATCCGCGAAATGGCTACCCGTGGTGGTGGTGGAATGAACAAATT-C 1828
||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1968 AAGTTCCTCCACAGGTCCGCGAAATGGCTACACGTGGTGGTGGTGGAATGAACAAATTTC 2027
Query 1829 AGTCGTTGGGGTCCTCCTTCC 1849
|||| |||||| | ||||||
Sbjct 2028 -GTCGCTGGGGTACACCTTCC 2047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112700223525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5