BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477366
Length=658
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01520.1 | Symbols: | Adenine nucleotide alpha hydrolases-l... 981 0.0
> AT3G01520.1 | Symbols: | Adenine nucleotide alpha hydrolases-like
superfamily protein | chr3:208439-210137 FORWARD LENGTH=811
Length=811
Score = 981 bits (531), Expect = 0.0
Identities = 598/630 (95%), Gaps = 6/630 (1%)
Strand=Plus/Plus
Query 1 AAAAATGGGGAGCGAGCCGACTAAAGTGATGGTGGCGGTGAACGCTTCGACGATCAAAGA 60
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 64 AAAAATGGGGAGCGAGCCAACAAAAGTGATGGTGGCGGTGAACGCTTCGACGATCAAAGA 123
Query 61 CTATCCTCACCCTTCGATTAGCTGCAAAAGAGCATTCGAATGGACTCTGGAGAAGATCGT 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 CTATCCTAACCCTTCGATTAGCTGCAAAAGAGCATTCGAATGGACTCTGGAGAAGATCGT 183
Query 121 CAGGTCCAACACTTCCGATTTCAAGATTCTCTTGCTTCACGTACAAGTCGTCGACGAAGA 180
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 184 AAGGTCCAACACTTCCGATTTCAAGATTCTCTTGCTCCACGTACAAGTCGTCGACGAAGA 243
Query 181 CGGTTTTGATGACGTAGACAGCATTTATGCTTCCCCTGATGATTTCCGAGACATGAGAGA 240
||||||||||||||| || |||||||||||||||||||| |||||||||||||||||| |
Sbjct 244 CGGTTTTGATGACGTGGATAGCATTTATGCTTCCCCTGAGGATTTCCGAGACATGAGACA 303
Query 241 ATCTAACAAGGCAAAAGGTCTTCACCTTCTCGAGTTTTTCGTTAATAAATGTCATGAGAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 ATCTAACAAGGCAAAAGGTCTTCACCTTCTCGAGTTTTTCGTTAATAAATGTCATGAGAT 363
Query 301 TGGGGTGGGTTGTGAGGCCTGGATTAAGATAGGTGATCCCAAGGATGTCATATGCCAAGA 360
|||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 364 TGGGGTTGGTTGCGAGGCCTGGATTAAGACAGGTGATCCCAAGGATGTCATATGCCAAGA 423
Query 361 AGTGAAACGAGTCCGACCAGATTTTCTGGTCGTGGGAAGTCGTGGACTTGGCCGGTTTCA 420
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 AGTGAAGCGAGTTCGACCAGATTTTCTGGTCGTGGGAAGTCGTGGACTTGGCCGGTTTCA 483
Query 421 AAAGGTCTTTGTGGGGACTGTGAGCGCGTTCTGTGTGAAACATGCCGAGTGTCCAGTTAT 480
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 484 AAAGGTCTTTGTGGGGACTGTGAGTGCGTTCTGTGTGAAACATGCGGAGTGTCCAGTTAT 543
Query 481 GACCATCAAACGCAATGCCGATGAAACTCCCAGTGATGCAGCTGATGACTAAGCAACAAC 540
||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||
Sbjct 544 GACGATCAAACGCAATGCCGATGAAACTCCCAGTGATCCAGCTGATGACTAAACAATAAC 603
Query 541 AGCTACGTCCCTTCCTTGTTTGATTTATACAGAGAGAGATTGCTTTTGTGTGTACAAAAT 600
| ||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||
Sbjct 604 A---ACGTCCCTTCCTTCTTTGATCTATACAGAGAGAGAGTGCTTTTGTGTGTACAAAAT 660
Query 601 CCTAATTCAC-ACCCCTGTATATATTATGT 629
|| ||||| | |||||| ||| |||| |||
Sbjct 661 CCAAATTC-CTACCCCTATATGTATT-TGT 688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31798215051
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5