BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477367
Length=676
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01516.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 933 0.0
> AT3G01516.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G14690.1);
Has 67 Blast hits to 67 proteins in 14 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:207336-208086
FORWARD LENGTH=751
Length=751
Score = 933 bits (505), Expect = 0.0
Identities = 628/685 (92%), Gaps = 17/685 (2%)
Strand=Plus/Plus
Query 1 ATAGGAGTGTGATGtatatatatataAGAAGTTAGTAAGCTTTGTTTTCTTTCTCT-TTT 59
||||||||||||||||| | ||||| |||||||||||||||||| ||||||||| |||
Sbjct 10 ATAGGAGTGTGATGTAT-T-TATAT---AAGTTAGTAAGCTTTGTTCTCTTTCTCTATTT 64
Query 60 CTTTGGCAGGTTTAT-AAATTTAAAAAATGGAGAAGGAAAACCAAAAGCCGCATCGAGTT 118
|||||||||| ||| |||||| ||||||||| |||||||||||||| |||||||||||
Sbjct 65 TTTTGGCAGGTATATAAAATTT-TAAAATGGAGGAGGAAAACCAAAAGTCGCATCGAGTT 123
Query 119 TCACGTAAAGACCAGAGTGGATCCCACTGGAGTCAAGGAGCCGATGAAGAGCCAAGAGCC 178
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 124 TCACGTAAAGACCAGAGTGGATCCCACTGGAGTCAAGGAGCCGATGAAGAGCCGAGAGCC 183
Query 179 AGATGCTCCGGGAAAAGGTGCCGGTCTTGGGCGGCGGCGGCGATCGCTGACTGCGTGGCG 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 AGATGCTCCGGGAAAAGGTGCCGGTCTTGGGCGGCGGCGGCGATCGCTGACTGCGTGGCG 243
Query 239 CTCTGTTGTTGTCCCTGCGCCGTCGTGAACCTCTTTACTCTCGCCTTTGTGAAGGTCCCG 298
||||| ||||||||||||||||| |||||| |||| |||||||||||||| |||||||||
Sbjct 244 CTCTGCTGTTGTCCCTGCGCCGTGGTGAACATCTTCACTCTCGCCTTTGTTAAGGTCCCG 303
Query 299 TGGATGATAGGCCGGAAATGTATCGGCCGTGGTGGCCGGAGTAAGAAGCGAAGGAAGAAA 358
||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||
Sbjct 304 TGGATGATAGGCCGGAAATGTATCGGCCGTGGTGGCCCGAGTAAGAAGCGGATGAAGAAA 363
Query 359 ATCAACCGTGAGGATCGTTTTCATCACCACCACCAGCACCGGAGGTCGGCCGAGATGGCG 418
||||||||||||||||| ||||||||||| ||||| ||| |||||||||||||||||| |
Sbjct 364 ATCAACCGTGAGGATCGGTTTCATCACCATCACCACCACAGGAGGTCGGCCGAGATGGTG 423
Query 419 AGCGGTGGATGTTGCGGCGGCGGGGATGG-G--G-AG--TTCGATGACCACCGGTTTGTG 472
|| |||||||||||||| ||||| ||||| | | || ||||||||||| |||||||||
Sbjct 424 AGTGGTGGATGTTGCGGTGGCGGAGATGGAGATGGAGAGTTCGATGACCATCGGTTTGTG 483
Query 473 GTGGAAAGAGATGGGAGTTTGACAAAAGAGGAAGAGAAAACGGCGTCGTTAAAAGGAGAT 532
||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||
Sbjct 484 GTGGAAAGAGACGGGAGTTTGACCAAAGAGGAAGCCAAAACGGCGTCGTTAAAAGAAGAG 543
Query 533 GAAGAGACGAGAATAAGTGCGAGAGTTGAAGCGGAAAGAGTTTGGTTGGAGTTGTATCAG 592
|||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct 544 GAAGAGACGAGAATAAGTGCGAGAGTGGAAGCAGAGAGAGTTTGGTTAGAGTTGTATCAG 603
Query 593 ATTGGACATCTTGGCTTTGGTAGAGTCTCCTTCACAGGAATTCATCAGTGATAATA-ATA 651
||||| ||||||||||||||||||||||||||||| || |||||||| |||||||| ||
Sbjct 604 ATTGGGCATCTTGGCTTTGGTAGAGTCTCCTTCACTGGCATTCATCAATGATAATAGAT- 662
Query 652 GATACTTATAATTATTAGGCGCATA 676
|| |||| ||||||||||||| |||
Sbjct 663 GA-ACTTTTAATTATTAGGCGTATA 686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32702429697
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5