BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477377
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01472.1 | Symbols: CPuORF33 | conserved peptide upstream op... 1341 0.0
AT3G01470.1 | Symbols: ATHB-1, ATHB1, HD-ZIP-1, HAT5, HB-1 | ho... 1341 0.0
AT1G20280.1 | Symbols: | homeobox-leucine zipper protein-relat... 215 9e-55
> AT3G01472.1 | Symbols: CPuORF33 | conserved peptide upstream
open reading frame 33 | chr3:182396-184403 REVERSE LENGTH=1440
Length=1440
Score = 1341 bits (726), Expect = 0.0
Identities = 943/1040 (91%), Gaps = 46/1040 (4%)
Strand=Plus/Plus
Query 240 TTTTATTTCTGTT-A--ATAAATGGAATCCAATTCGTTTTTCTTCGGTCCATCTGCTTCA 296
||||||||||||| | | ||||||||||||||||||||||||||| |||||||||||||
Sbjct 349 TTTTATTTCTGTTGATCAAAAATGGAATCCAATTCGTTTTTCTTCGATCCATCTGCTTCA 408
Query 297 CATGGCAACAACAACATGTTCTTCCTTGGGAATCTCAATCCCGTCGTCCAAGGAGGAGGA 356
|| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 CACGG---CAACAGCATGTTCTTCCTTGGGAATCTCAATCCCGTCGTCCAAGGAGGAGGA 465
Query 357 GCAAGATC------G---ATGGAGGAAACATCAAAGCGAAGGCCCTTCTTTAGCTCCCCT 407
|||||||| | ||||||||||| || |||||||||||||||||||||||||||
Sbjct 466 GCAAGATCGATGATGAACATGGAGGAAACTTCGAAGCGAAGGCCCTTCTTTAGCTCCCCT 525
Query 408 GAGGATCTCTACGACGACGACTATTACGACGACCAGTTGCCCGAAAAGAAGCGTCGCCTC 467
||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||
Sbjct 526 GAGGATCTCTACGACGATGACTTTTACGACGACCAGTTGCCTGAAAAGAAGCGTCGCCTC 585
Query 468 ACTACCGAACAAGTGCATCTGCTGGAGAAAAGCTTCGAGACAGAGAACAAGCTGGAGCCA 527
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 586 ACTACCGAACAAGTGCATCTGCTGGAGAAAAGCTTCGAGACAGAGAACAAGCTAGAGCCT 645
Query 528 GACCGCAAGACTCAGCTTGCCAAGAAGCTTGGTCTACAGCCAAGGCAAGTGGCTGTCTGG 587
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 GAACGCAAGACTCAGCTTGCCAAGAAGCTTGGTCTACAGCCAAGGCAAGTGGCTGTCTGG 705
Query 588 TTTCAGAATCGCAGAGCTCGTTGGAAAACAAAACAGCTCGAGAGAGACTACGATCTTCTC 647
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 706 TTTCAGAATCGCCGAGCTCGTTGGAAAACAAAACAGCTTGAGAGAGACTACGATCTTCTC 765
Query 648 AAGTCCACTTACGATCAACTTCTCTCTAACTACGACTCCATCGTCAAGGACAACGATAAG 707
|||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 766 AAGTCCACTTACGACCAACTTCTTTCTAACTACGACTCCATCGTCATGGACAACGATAAG 825
Query 708 CTCAGATCCGAGGTTACTTCCCTGACCGAAAAGCTCCAGGGCAAAGAAGAGACAGCTAAT 767
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 826 CTCAGATCCGAGGTTACTTCCCTGACCGAAAAGCTTCAGGGCAAACAAGAGACAGCTAAT 885
Query 768 GAACCACCGGGTCTAGTGCCCGAACCAAACCAACTCGATACGGTATACATAAACCCGGCA 827
|||||||| |||| ||||||||||||||||||||| ||| |||| ||||| || |||||
Sbjct 886 GAACCACCTGGTCAAGTGCCCGAACCAAACCAACTTGATCCGGTTTACATTAATGCGGCA 945
Query 828 GCAATCAAAACCGAGGACCGGTTAAGTTCAGGGAGTGTTGGGAGCGCGGTACTAGACGAA 887
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 946 GCAATCAAAACCGAGGACCGGTTAAGTTCAGGGAGCGTTGGGAGCGCGGTACTAGACGAC 1005
Query 888 GACGCACCTCAACTACTAGACAGTTGTGACTCTTACTTCCCAAGCATCGTACCCATCCAA 947
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1006 GACGCACCTCAACTACTAGACAGCTGTGACTCTTACTTCCCAAGCATCGTACCCATCCAA 1065
Query 948 GACA-C--CAACGCCAGTGATAATGACAATGACCGGAGCTGTTTCGCCGACGTCTTTGTG 1004
|||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1066 GACAACAGCAACGCCAGTGATCATGACAATGACCGGAGCTGTTTCGCCGACGTCTTTGTG 1125
Query 1005 CCCACCACTTCACCGTCGCACGATCA-C--GGTGAATCATTGGCTTTCTGGGGATGGCCT 1061
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1126 CCCACCACTTCACCGTCGCACGATCATCACGGTGAATCATTGGCTTTCTGGGGATGGCCT 1185
Query 1062 TA-AAAA--AC-C--A-A-TG--TGTGT-TTTATT-AAGTACAACAGTCGTCTT---GTT 1106
|| |||| || | | | | ||||| |||||| |||| ||| |||| |||| |||
Sbjct 1186 TAGAAAACCACTCTGATAATAAATGTGTGTTTATTTAAGTTCAAGAGTCATCTTCTTGTT 1245
Query 1107 GTTTCCATGTTGACGATAATCGTGGACTCGTGGAATAATTCCGCAGTTCAACAGTATTTT 1166
|||||||||||||||||||| || |||||||||||||||||||| ||||||| |||||||
Sbjct 1246 GTTTCCATGTTGACGATAATTGTTGACTCGTGGAATAATTCCGCTGTTCAACGGTATTTT 1305
Query 1167 TAT-A-T-G--TT-TATGAAATCACGTCCT-A-GTTCAATGCAGTGTTCAGTTTTAAAGT 1218
||| | | | || |||| | | | | | || ||||||||||||| | ||| ||||
Sbjct 1306 TATCAGTTGCATTATATGCTTTTATGAAATCAAGT-CAATGCAGTGTTCTGATTTGAAGT 1364
Query 1219 TGAAA-GATTGATCTTCTTC 1237
| ||| ||||||||||||||
Sbjct 1365 TAAAAAGATTGATCTTCTTC 1384
Score = 204 bits (110), Expect = 2e-51
Identities = 212/257 (82%), Gaps = 24/257 (9%)
Strand=Plus/Plus
Query 1 ACGCTCGCATTGCAAGTACAAAACCAACAAGGAACTtctctctctctctGGAT-T-ATGA 58
|||||| |||||||| |||||||||||||||||||| ||||||||||||| | | |
Sbjct 4 ACGCTCACATTGCAAAAACAAAACCAACAAGGAACTTGTCTCTCTCTCTGGCTCTCTTTC 63
Query 59 TC-TGA-TTGAT--TGGCGGGTTTTCCAAAATTGGAAAATAGATAAGGTTTCTTCTTGGA 114
|| | | |||| | || | ||| |||||||| | |||||| ||||||||| |||||
Sbjct 64 TCTTAACGTGATCATAACGTG-ATTCGAAAATTGG-ATATAGAT-AGGTTTCTTGTTGGA 120
Query 115 TCTTCTTGATCCCTCTGGTAACGGA--GG-G----G-A----ATGATGGGATTTTGTATC 162
||||||||||||||| || ||| || | | | ||||||||||||||||||
Sbjct 121 ---TCTTGATCCCTCTGGAAAAGGAGGGGAGAATAGCAGTTCATGATGGGATTTTGTATC 177
Query 163 TGCCCGTTGGAGTCACCGGCGAGATTACTATGGAGTACAAGCTTCTTCCGTCATAAGATC 222
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 178 TGCCCGTTGGAGTCACCTGCGAGATTACTATGGAGTACAAGCTTCTTCCGCCATAAGATC 237
Query 223 ATGATCTTCTAATCCTT 239
|||||||||||||||||
Sbjct 238 ATGATCTTCTAATCCTT 254
> AT3G01470.1 | Symbols: ATHB-1, ATHB1, HD-ZIP-1, HAT5, HB-1 |
homeobox 1 | chr3:182396-184403 REVERSE LENGTH=1440
Length=1440
Score = 1341 bits (726), Expect = 0.0
Identities = 943/1040 (91%), Gaps = 46/1040 (4%)
Strand=Plus/Plus
Query 240 TTTTATTTCTGTT-A--ATAAATGGAATCCAATTCGTTTTTCTTCGGTCCATCTGCTTCA 296
||||||||||||| | | ||||||||||||||||||||||||||| |||||||||||||
Sbjct 349 TTTTATTTCTGTTGATCAAAAATGGAATCCAATTCGTTTTTCTTCGATCCATCTGCTTCA 408
Query 297 CATGGCAACAACAACATGTTCTTCCTTGGGAATCTCAATCCCGTCGTCCAAGGAGGAGGA 356
|| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 CACGG---CAACAGCATGTTCTTCCTTGGGAATCTCAATCCCGTCGTCCAAGGAGGAGGA 465
Query 357 GCAAGATC------G---ATGGAGGAAACATCAAAGCGAAGGCCCTTCTTTAGCTCCCCT 407
|||||||| | ||||||||||| || |||||||||||||||||||||||||||
Sbjct 466 GCAAGATCGATGATGAACATGGAGGAAACTTCGAAGCGAAGGCCCTTCTTTAGCTCCCCT 525
Query 408 GAGGATCTCTACGACGACGACTATTACGACGACCAGTTGCCCGAAAAGAAGCGTCGCCTC 467
||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||
Sbjct 526 GAGGATCTCTACGACGATGACTTTTACGACGACCAGTTGCCTGAAAAGAAGCGTCGCCTC 585
Query 468 ACTACCGAACAAGTGCATCTGCTGGAGAAAAGCTTCGAGACAGAGAACAAGCTGGAGCCA 527
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 586 ACTACCGAACAAGTGCATCTGCTGGAGAAAAGCTTCGAGACAGAGAACAAGCTAGAGCCT 645
Query 528 GACCGCAAGACTCAGCTTGCCAAGAAGCTTGGTCTACAGCCAAGGCAAGTGGCTGTCTGG 587
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 GAACGCAAGACTCAGCTTGCCAAGAAGCTTGGTCTACAGCCAAGGCAAGTGGCTGTCTGG 705
Query 588 TTTCAGAATCGCAGAGCTCGTTGGAAAACAAAACAGCTCGAGAGAGACTACGATCTTCTC 647
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 706 TTTCAGAATCGCCGAGCTCGTTGGAAAACAAAACAGCTTGAGAGAGACTACGATCTTCTC 765
Query 648 AAGTCCACTTACGATCAACTTCTCTCTAACTACGACTCCATCGTCAAGGACAACGATAAG 707
|||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 766 AAGTCCACTTACGACCAACTTCTTTCTAACTACGACTCCATCGTCATGGACAACGATAAG 825
Query 708 CTCAGATCCGAGGTTACTTCCCTGACCGAAAAGCTCCAGGGCAAAGAAGAGACAGCTAAT 767
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 826 CTCAGATCCGAGGTTACTTCCCTGACCGAAAAGCTTCAGGGCAAACAAGAGACAGCTAAT 885
Query 768 GAACCACCGGGTCTAGTGCCCGAACCAAACCAACTCGATACGGTATACATAAACCCGGCA 827
|||||||| |||| ||||||||||||||||||||| ||| |||| ||||| || |||||
Sbjct 886 GAACCACCTGGTCAAGTGCCCGAACCAAACCAACTTGATCCGGTTTACATTAATGCGGCA 945
Query 828 GCAATCAAAACCGAGGACCGGTTAAGTTCAGGGAGTGTTGGGAGCGCGGTACTAGACGAA 887
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 946 GCAATCAAAACCGAGGACCGGTTAAGTTCAGGGAGCGTTGGGAGCGCGGTACTAGACGAC 1005
Query 888 GACGCACCTCAACTACTAGACAGTTGTGACTCTTACTTCCCAAGCATCGTACCCATCCAA 947
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1006 GACGCACCTCAACTACTAGACAGCTGTGACTCTTACTTCCCAAGCATCGTACCCATCCAA 1065
Query 948 GACA-C--CAACGCCAGTGATAATGACAATGACCGGAGCTGTTTCGCCGACGTCTTTGTG 1004
|||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1066 GACAACAGCAACGCCAGTGATCATGACAATGACCGGAGCTGTTTCGCCGACGTCTTTGTG 1125
Query 1005 CCCACCACTTCACCGTCGCACGATCA-C--GGTGAATCATTGGCTTTCTGGGGATGGCCT 1061
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1126 CCCACCACTTCACCGTCGCACGATCATCACGGTGAATCATTGGCTTTCTGGGGATGGCCT 1185
Query 1062 TA-AAAA--AC-C--A-A-TG--TGTGT-TTTATT-AAGTACAACAGTCGTCTT---GTT 1106
|| |||| || | | | | ||||| |||||| |||| ||| |||| |||| |||
Sbjct 1186 TAGAAAACCACTCTGATAATAAATGTGTGTTTATTTAAGTTCAAGAGTCATCTTCTTGTT 1245
Query 1107 GTTTCCATGTTGACGATAATCGTGGACTCGTGGAATAATTCCGCAGTTCAACAGTATTTT 1166
|||||||||||||||||||| || |||||||||||||||||||| ||||||| |||||||
Sbjct 1246 GTTTCCATGTTGACGATAATTGTTGACTCGTGGAATAATTCCGCTGTTCAACGGTATTTT 1305
Query 1167 TAT-A-T-G--TT-TATGAAATCACGTCCT-A-GTTCAATGCAGTGTTCAGTTTTAAAGT 1218
||| | | | || |||| | | | | | || ||||||||||||| | ||| ||||
Sbjct 1306 TATCAGTTGCATTATATGCTTTTATGAAATCAAGT-CAATGCAGTGTTCTGATTTGAAGT 1364
Query 1219 TGAAA-GATTGATCTTCTTC 1237
| ||| ||||||||||||||
Sbjct 1365 TAAAAAGATTGATCTTCTTC 1384
Score = 204 bits (110), Expect = 2e-51
Identities = 212/257 (82%), Gaps = 24/257 (9%)
Strand=Plus/Plus
Query 1 ACGCTCGCATTGCAAGTACAAAACCAACAAGGAACTtctctctctctctGGAT-T-ATGA 58
|||||| |||||||| |||||||||||||||||||| ||||||||||||| | | |
Sbjct 4 ACGCTCACATTGCAAAAACAAAACCAACAAGGAACTTGTCTCTCTCTCTGGCTCTCTTTC 63
Query 59 TC-TGA-TTGAT--TGGCGGGTTTTCCAAAATTGGAAAATAGATAAGGTTTCTTCTTGGA 114
|| | | |||| | || | ||| |||||||| | |||||| ||||||||| |||||
Sbjct 64 TCTTAACGTGATCATAACGTG-ATTCGAAAATTGG-ATATAGAT-AGGTTTCTTGTTGGA 120
Query 115 TCTTCTTGATCCCTCTGGTAACGGA--GG-G----G-A----ATGATGGGATTTTGTATC 162
||||||||||||||| || ||| || | | | ||||||||||||||||||
Sbjct 121 ---TCTTGATCCCTCTGGAAAAGGAGGGGAGAATAGCAGTTCATGATGGGATTTTGTATC 177
Query 163 TGCCCGTTGGAGTCACCGGCGAGATTACTATGGAGTACAAGCTTCTTCCGTCATAAGATC 222
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 178 TGCCCGTTGGAGTCACCTGCGAGATTACTATGGAGTACAAGCTTCTTCCGCCATAAGATC 237
Query 223 ATGATCTTCTAATCCTT 239
|||||||||||||||||
Sbjct 238 ATGATCTTCTAATCCTT 254
> AT1G20280.1 | Symbols: | homeobox-leucine zipper protein-related
| chr1:7023829-7024212 FORWARD LENGTH=216
Length=216
Score = 215 bits (116), Expect = 9e-55
Identities = 181/210 (86%), Gaps = 13/210 (6%)
Strand=Plus/Plus
Query 258 ATGGAATCCAATTCGTTTTTCTTCGGTCCATCTGCTTCACATGGCAACAACAACATGTTC 317
|||||||||||||| ||||||||| |||||||||||||||||| ||||| |||||||
Sbjct 1 ATGGAATCCAATTCATTTTTCTTCAATCCATCTGCTTCACATGG---CAACATCATGTTC 57
Query 318 TTCCTTGGGAATCTCAATCCCGTCGTCCAAGGAGGAGGAGCAAGATC---GAT------G 368
||| || |||||||||||||||| |||||||| |||||| ||||||| ||| |
Sbjct 58 TTCTTTAGGAATCTCAATCCCGTTGTCCAAGGGGGAGGAACAAGATCGATGATGAACAAG 117
Query 369 GAGGAAACATCAAAGCGAAGGCCCTTCTTTAGCTCCCCTGAGGATCTCTACGACGACGAC 428
||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| |||
Sbjct 118 GAGGAAACATCAAAGCGAAGGCCCTTCTTTAGCTCTCTTGAGGATCTTTACGACGATGAC 177
Query 429 TATTACGACGACCAGTTGCCCGAAAAGAAG 458
|||||||||||||| |||| ||||| |||
Sbjct 178 TATTACGACGACCAATTGCT-GAAAATAAG 206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62098074165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5